Wall clock time and date at job start Tue Mar 31 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47046 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99339 * 2 1 3 5 5 C 1.53006 * 109.47123 * 176.05573 * 4 2 1 6 6 C 1.50700 * 109.47302 * 185.00012 * 5 4 2 7 7 H 1.08009 * 119.99653 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00230 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99858 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00049 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46886 * 59.99976 * 10 8 6 12 12 H 1.48500 * 109.46927 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47192 * 300.00101 * 10 8 6 14 14 N 1.46902 * 109.46923 * 119.99589 * 2 1 3 15 15 C 1.46466 * 111.00095 * 57.26311 * 14 2 1 16 16 C 1.53320 * 111.23900 * 170.38246 * 15 14 2 17 17 C 1.53137 * 108.04270 * 63.22725 * 16 15 14 18 18 H 1.08994 * 110.97630 * 67.92306 * 17 16 15 19 19 S 1.81386 * 111.23785 * 192.03545 * 17 16 15 20 20 C 1.77307 * 94.82134 * 119.17509 * 19 17 16 21 21 O 1.21673 * 126.70342 * 177.47046 * 20 19 17 22 22 C 1.46229 * 106.59862 * 357.43163 * 20 19 17 23 23 C 1.30411 * 118.68136 * 359.92064 * 22 20 19 24 24 C 1.47504 * 110.95861 * 291.60778 * 14 2 1 25 25 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47441 * 300.00530 * 1 2 3 27 27 H 1.09000 * 109.47347 * 60.00606 * 1 2 3 28 28 H 1.08999 * 109.47439 * 296.05906 * 4 2 1 29 29 H 1.08999 * 109.46910 * 56.06165 * 4 2 1 30 30 H 1.08994 * 109.47287 * 305.00524 * 5 4 2 31 31 H 1.09001 * 109.46534 * 65.00332 * 5 4 2 32 32 H 0.96996 * 120.00019 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.11484 * 49.94935 * 15 14 2 34 34 H 1.08996 * 109.11534 * 290.82073 * 15 14 2 35 35 H 1.09006 * 109.75042 * 182.86302 * 16 15 14 36 36 H 1.08998 * 109.75200 * 303.53909 * 16 15 14 37 37 H 1.07997 * 120.66505 * 179.97438 * 22 20 19 38 38 H 1.08996 * 110.13579 * 59.97960 * 24 14 2 39 39 H 1.09001 * 110.16916 * 298.38790 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5668 -0.6360 -1.2996 6 6 4.0612 -1.2381 -2.5896 7 1 3.3568 -1.6410 -3.3024 8 6 5.4127 -1.2747 -2.8600 9 7 6.2704 -0.7836 -1.9923 10 14 6.0256 -2.0218 -4.4586 11 1 5.4502 -1.2754 -5.6064 12 1 7.5075 -1.9387 -4.5077 13 1 5.6062 -3.4443 -4.5330 14 7 2.0196 -0.6924 1.1995 15 6 1.4973 -2.0592 1.2666 16 6 2.1845 -2.8625 2.3770 17 6 1.8531 -2.1991 3.7169 18 1 0.7955 -2.3098 3.9560 19 16 2.8932 -2.8554 5.0501 20 6 3.6376 -1.2943 5.4406 21 8 4.4378 -1.0724 6.3299 22 6 3.1028 -0.3257 4.4846 23 6 2.2491 -0.7366 3.5885 24 6 1.7172 0.0835 2.4170 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.7355 -1.7674 -1.2144 29 1 1.6202 -0.2500 -2.1377 30 1 3.8744 0.4082 -1.2447 31 1 3.9894 -1.1840 -0.4574 32 1 7.2212 -0.8097 -2.1823 33 1 1.6680 -2.5538 0.3103 34 1 0.4259 -2.0227 1.4631 35 1 1.8150 -3.8880 2.3724 36 1 3.2632 -2.8592 2.2205 37 1 3.4093 0.7093 4.5192 38 1 0.6406 0.2226 2.5156 39 1 2.2173 1.0513 2.3798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:14 Heat of formation + Delta-G solvation = -17.786369 kcal Electronic energy + Delta-G solvation = -20116.976554 eV Core-core repulsion = 17150.883757 eV Total energy + Delta-G solvation = -2966.092797 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.94151 -38.82685 -36.45588 -33.42737 -32.64856 -31.28847 -29.12315 -27.75344 -25.53124 -24.84303 -23.03064 -22.32369 -21.06144 -19.24077 -18.99065 -17.60792 -16.33156 -16.18579 -15.73134 -15.30648 -14.98718 -14.78992 -14.44626 -14.20119 -13.83559 -13.65358 -13.28249 -13.01562 -12.65549 -12.32433 -12.20550 -12.07822 -11.55185 -11.39786 -11.09241 -11.02406 -10.86895 -10.56413 -10.50517 -10.36894 -9.77313 -9.70802 -9.67002 -9.28267 -8.97390 -8.62287 -8.29312 -8.00944 -5.93309 -3.95651 0.56496 1.17492 1.69387 2.44207 3.35071 3.40433 3.41864 3.76981 3.98257 4.15740 4.49681 4.57615 4.77329 4.98460 5.10053 5.11510 5.20507 5.33032 5.42202 5.44036 5.45605 5.53202 5.56576 5.73819 5.85726 5.96555 6.07230 6.11393 6.16494 6.23405 6.52368 6.71770 6.87943 7.12780 7.24904 7.30131 7.78145 7.97933 8.13797 8.49877 9.12971 9.67808 11.17388 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.004617 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.493535 B = 6062.590217 C = 6850.800681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.084 3.916 3 H 0.083 0.917 4 C -0.104 4.104 5 C 0.031 3.969 6 C -0.523 4.523 7 H 0.050 0.950 8 C 0.059 3.941 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.521 5.521 15 C 0.053 3.947 16 C -0.097 4.097 17 C -0.048 4.048 18 H 0.132 0.868 19 S -0.206 6.206 20 C 0.420 3.580 21 O -0.414 6.414 22 C -0.237 4.237 23 C -0.020 4.020 24 C 0.102 3.898 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.010 0.990 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.100 0.900 34 H 0.034 0.966 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.157 0.843 38 H 0.060 0.940 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.723 -0.057 10.759 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.023 4.023 3 H 0.101 0.899 4 C -0.142 4.142 5 C -0.006 4.006 6 C -0.562 4.562 7 H 0.068 0.932 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.245 5.245 15 C -0.076 4.076 16 C -0.136 4.136 17 C -0.176 4.176 18 H 0.149 0.851 19 S 0.031 5.969 20 C 0.190 3.810 21 O -0.292 6.292 22 C -0.264 4.264 23 C -0.024 4.024 24 C -0.027 4.027 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.174 0.826 38 H 0.078 0.922 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.442 -1.187 11.753 17.157 hybrid contribution -0.541 0.804 -1.242 1.575 sum -12.983 -0.383 10.511 16.709 Atomic orbital electron populations 1.22528 0.98554 1.01853 1.01639 1.21905 0.91219 0.98824 0.90372 0.89933 1.21785 1.01044 0.98226 0.93131 1.18978 0.87786 0.97050 0.96761 1.21281 0.91709 1.39141 1.04059 0.93159 1.24984 0.97122 0.95635 0.96491 1.69957 1.02032 1.46024 1.35160 0.86759 0.77649 0.79782 0.84369 1.20395 1.21368 1.20359 1.61830 1.60319 1.01528 1.00778 1.22125 0.95789 0.89584 1.00119 1.21826 1.04024 0.98517 0.89209 1.23392 1.02133 0.94821 0.97294 0.85073 1.87221 1.48884 1.19455 1.41359 1.24323 0.82463 0.89760 0.84500 1.90696 1.29295 1.79472 1.29692 1.22499 1.02221 1.02552 0.99135 1.22633 0.92641 0.93864 0.93264 1.21553 0.98866 0.96150 0.86095 0.92505 0.93378 0.91911 0.93228 0.92863 0.97120 0.95264 0.93080 0.88208 0.94766 0.89754 0.88817 0.82572 0.92232 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 8.53 37.15 0.32 -1.75 16 2 C 0.08 1.20 2.33 -67.72 -0.16 1.04 16 3 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 4 C -0.10 -1.91 4.47 -26.73 -0.12 -2.03 16 5 C 0.03 0.77 4.79 -27.88 -0.13 0.63 16 6 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 7 H 0.05 1.34 7.74 -52.48 -0.41 0.94 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 10 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 N -0.52 -7.09 4.06 -226.57 -0.92 -8.01 16 15 C 0.05 0.64 4.38 -3.89 -0.02 0.63 16 16 C -0.10 -1.11 5.59 -26.49 -0.15 -1.26 16 17 C -0.05 -0.50 3.59 -27.14 -0.10 -0.60 16 18 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 19 S -0.21 -2.62 22.79 -107.50 -2.45 -5.07 16 20 C 0.42 5.98 8.10 33.94 0.27 6.25 16 21 O -0.41 -6.96 18.05 5.21 0.09 -6.87 16 22 C -0.24 -2.85 10.00 -37.93 -0.38 -3.23 16 23 C -0.02 -0.22 5.46 -99.30 -0.54 -0.76 16 24 C 0.10 1.09 5.69 -3.71 -0.02 1.07 16 25 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 26 H 0.05 0.46 6.64 -51.93 -0.34 0.11 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.88 6.08 -51.93 -0.32 0.57 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.03 0.77 7.86 -51.93 -0.41 0.36 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.10 1.38 5.82 -51.93 -0.30 1.08 16 34 H 0.03 0.35 6.78 -51.93 -0.35 -0.01 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.06 0.53 6.61 -51.93 -0.34 0.18 16 39 H 0.10 1.03 8.12 -51.93 -0.42 0.60 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -31.07 322.09 -9.89 -40.96 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -5.75 Total: -3.16 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.44 Total: -13.18 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: -0.18 Total: -34.02 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: 0.09 Total: -6.87 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.45 Total: -5.07 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.07 -9.89 -40.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.173 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds