Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47448 * 2 1 4 4 H 1.08999 * 109.47435 * 305.00549 * 3 2 1 5 5 C 1.50705 * 109.47387 * 185.00053 * 3 2 1 6 6 H 1.08001 * 119.99857 * 240.00178 * 5 3 2 7 7 C 1.37875 * 119.99843 * 60.00644 * 5 3 2 8 8 N 1.31516 * 119.99685 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00079 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46976 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47148 * 119.99461 * 9 7 5 12 12 H 1.48494 * 109.47139 * 239.99830 * 9 7 5 13 13 N 1.46508 * 109.46831 * 65.00309 * 3 2 1 14 14 C 1.34776 * 119.99793 * 274.99546 * 13 3 2 15 15 O 1.21288 * 120.00159 * 0.02562 * 14 13 3 16 16 C 1.50704 * 120.00008 * 179.97438 * 14 13 3 17 17 C 1.50696 * 109.47214 * 180.02562 * 16 14 13 18 18 C 1.38251 * 119.95604 * 99.99759 * 17 16 14 19 19 C 1.38142 * 120.07778 * 179.72019 * 18 17 16 20 20 C 1.38763 * 119.99431 * 0.26239 * 19 18 17 21 21 O 1.35895 * 120.04251 * 180.02562 * 20 19 18 22 22 C 1.38676 * 119.91598 * 359.97438 * 20 19 18 23 23 C 1.38388 * 119.91886 * 0.02562 * 22 20 19 24 24 F 1.35095 * 119.99403 * 179.97438 * 23 22 20 25 25 H 1.09005 * 109.46883 * 300.00059 * 1 2 3 26 26 H 1.08999 * 109.46968 * 59.99382 * 1 2 3 27 27 H 1.08996 * 109.47633 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46805 * 240.00490 * 2 1 3 29 29 H 1.09001 * 109.47488 * 120.00620 * 2 1 3 30 30 H 0.97004 * 119.99643 * 180.02562 * 8 7 5 31 31 H 0.96994 * 119.99776 * 95.00594 * 13 3 2 32 32 H 1.08995 * 109.47054 * 60.00150 * 16 14 13 33 33 H 1.08998 * 109.46890 * 300.00365 * 16 14 13 34 34 H 1.08002 * 119.96411 * 0.02562 * 18 17 16 35 35 H 1.07999 * 119.99728 * 180.27805 * 19 18 17 36 36 H 0.96700 * 114.00400 * 89.99801 * 21 20 19 37 37 H 1.07994 * 120.03775 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3368 -2.1729 9 14 6.0050 0.8800 -1.3813 10 1 6.5988 1.5450 -0.1937 11 1 6.4961 -0.5191 -1.4629 12 1 6.4000 1.6157 -2.6092 13 7 1.6525 2.0974 1.2519 14 6 0.4353 2.6644 1.3671 15 8 -0.3395 2.6320 0.4345 16 6 0.0364 3.3376 2.6550 17 6 -1.3614 3.8852 2.5237 18 6 -2.4292 3.1872 3.0565 19 6 -3.7109 3.6897 2.9426 20 6 -3.9283 4.8938 2.2880 21 8 -5.1887 5.3893 2.1759 22 6 -2.8577 5.5913 1.7494 23 6 -1.5751 5.0846 1.8655 24 9 -0.5310 5.7626 1.3409 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8292 -0.0616 -2.9496 31 1 2.2721 2.1230 1.9978 32 1 0.7278 4.1528 2.8682 33 1 0.0674 2.6128 3.4685 34 1 -2.2606 2.2503 3.5667 35 1 -4.5436 3.1456 3.3633 36 1 -5.4512 5.9660 2.9064 37 1 -3.0247 6.5284 1.2391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180652024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = -110.249190 kcal Electronic energy + Delta-G solvation = -21918.100550 eV Core-core repulsion = 18381.785088 eV Total energy + Delta-G solvation = -3536.315462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.79835 -39.87420 -38.88277 -36.83147 -35.00325 -32.47575 -32.01827 -30.82375 -30.59405 -27.54422 -26.27653 -23.13022 -22.97576 -22.03673 -20.20567 -19.29075 -18.82174 -17.18900 -16.87775 -16.38496 -16.04513 -15.75133 -15.22812 -15.14138 -14.64213 -14.60660 -14.12305 -13.83034 -13.58436 -13.04079 -12.75646 -12.63083 -12.18180 -11.82994 -11.59619 -11.49138 -11.25236 -11.23085 -10.94376 -10.88027 -10.81982 -10.29883 -10.15990 -9.61578 -9.13762 -9.01681 -8.89789 -8.51264 -8.45427 -7.79420 -6.11146 -4.20462 0.99851 1.12629 3.24178 3.31737 3.33757 3.35751 3.42745 3.82798 4.18104 4.39777 4.47040 4.67794 4.69382 4.91691 5.19653 5.20555 5.46775 5.52554 5.58735 5.72976 5.95838 5.97605 6.19966 6.28756 6.40414 6.47032 6.67109 6.69541 7.04826 7.21972 7.38913 7.42188 7.48335 7.63659 7.75122 7.92376 8.19833 8.69147 8.79731 9.16787 9.47111 10.94196 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031713 B = 0.003953 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.696516 B = 7081.295938 C = 7427.129669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.503 3.497 15 O -0.541 6.541 16 C -0.108 4.108 17 C -0.096 4.096 18 C -0.066 4.066 19 C -0.156 4.156 20 C 0.127 3.873 21 O -0.495 6.495 22 C -0.183 4.183 23 C 0.136 3.864 24 F -0.131 7.131 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.099 0.901 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.390 0.610 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.147 7.432 13.666 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.357 5.357 14 C 0.287 3.713 15 O -0.419 6.419 16 C -0.148 4.148 17 C -0.097 4.097 18 C -0.084 4.084 19 C -0.174 4.174 20 C 0.082 3.918 21 O -0.305 6.305 22 C -0.203 4.203 23 C 0.116 3.884 24 F -0.109 7.109 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.246 0.754 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.633 7.002 12.235 18.277 hybrid contribution 1.459 0.355 0.469 1.573 sum -10.173 7.357 12.704 17.861 Atomic orbital electron populations 1.21831 0.98350 0.97939 1.01248 1.21929 0.92590 0.99841 1.02226 1.18783 0.94172 0.89140 0.81064 0.93367 1.21277 0.90752 1.38871 1.06264 0.92048 1.24893 0.98591 0.94849 0.95399 1.69911 1.35009 1.37674 1.09351 0.86407 0.84916 0.77737 0.78119 1.19750 1.20891 1.20900 1.46466 1.14494 1.56127 1.18566 1.20114 0.82963 0.79565 0.88688 1.90700 1.51360 1.59496 1.40340 1.20695 0.93640 1.01727 0.98774 1.19464 0.96197 0.93886 1.00172 1.20765 0.90930 0.98706 0.97975 1.21372 0.97579 0.96967 1.01502 1.18062 0.83473 0.93072 0.97149 1.84847 1.27547 1.68072 1.50056 1.21288 0.90867 1.02761 1.05335 1.17227 0.83809 0.91320 0.96030 1.91522 1.56243 1.78984 1.84139 0.94297 0.93200 0.95930 0.88334 0.95078 0.92642 0.78001 0.88183 0.88005 0.84601 0.84871 0.75404 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.81 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.87 11.29 55.43 0.63 -24.24 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 N -0.71 -14.48 5.02 -54.92 -0.28 -14.76 16 14 C 0.50 9.79 6.38 -10.98 -0.07 9.72 16 15 O -0.54 -12.68 13.08 5.55 0.07 -12.61 16 16 C -0.11 -1.51 5.55 -29.03 -0.16 -1.67 16 17 C -0.10 -1.36 4.44 -104.53 -0.46 -1.83 16 18 C -0.07 -0.79 9.66 -39.61 -0.38 -1.17 16 19 C -0.16 -1.73 9.99 -39.42 -0.39 -2.12 16 20 C 0.13 1.49 6.70 -39.23 -0.26 1.23 16 21 O -0.50 -4.87 13.50 -19.41 -0.26 -5.13 16 22 C -0.18 -2.39 9.97 -39.36 -0.39 -2.79 16 23 C 0.14 2.05 7.11 -39.44 -0.28 1.77 16 24 F -0.13 -2.18 16.66 2.25 0.04 -2.14 16 25 H 0.04 0.84 5.64 -51.93 -0.29 0.54 16 26 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 6.78 8.54 -40.82 -0.35 6.43 16 32 H 0.10 1.26 7.95 -51.93 -0.41 0.84 16 33 H 0.10 1.10 8.00 -51.93 -0.42 0.68 16 34 H 0.14 1.32 8.03 -52.49 -0.42 0.90 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.39 1.66 9.06 45.56 0.41 2.08 16 37 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -32.85 317.49 -6.65 -39.49 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.82 Total: 7.87 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.79 Total: -8.92 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.35 Total: -39.00 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.19 Total: -17.74 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.85 -6.65 -39.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180652024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.755 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds