Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99537 * 2 1 4 4 H 1.09000 * 109.47693 * 29.99636 * 3 2 1 5 5 C 1.53005 * 109.46832 * 269.99071 * 3 2 1 6 6 C 1.52998 * 109.47060 * 149.99767 * 3 2 1 7 7 C 1.50696 * 109.47260 * 294.99667 * 6 3 2 8 8 O 1.21296 * 119.99964 * 359.97438 * 7 6 3 9 9 N 1.34775 * 120.00266 * 179.97438 * 7 6 3 10 10 C 1.40015 * 119.99802 * 174.87520 * 9 7 6 11 11 C 1.39367 * 119.90638 * 146.36524 * 10 9 7 12 12 C 1.38367 * 120.47079 * 179.97438 * 11 10 9 13 13 C 1.38007 * 120.28474 * 359.97438 * 12 11 10 14 14 F 1.35104 * 120.09409 * 179.97438 * 13 12 11 15 15 C 1.41012 * 119.81297 * 0.02562 * 13 12 11 16 16 C 1.41292 * 120.22435 * 179.97438 * 15 13 12 17 17 H 1.07994 * 120.00620 * 331.49567 * 16 15 13 18 18 C 1.39932 * 119.99425 * 151.49745 * 16 15 13 19 19 N 1.30850 * 119.99977 * 348.99610 * 18 16 15 20 20 Si 1.86799 * 119.99926 * 168.99741 * 18 16 15 21 21 H 1.48496 * 109.47212 * 59.99940 * 20 18 16 22 22 H 1.48496 * 109.46961 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47230 * 299.99891 * 20 18 16 24 24 C 1.38137 * 119.91105 * 326.09048 * 10 9 7 25 25 H 1.09000 * 109.46908 * 60.00919 * 1 2 3 26 26 H 1.09001 * 109.46406 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47615 * 300.00221 * 1 2 3 28 28 H 1.09000 * 109.46842 * 60.00819 * 5 3 2 29 29 H 1.08994 * 109.47134 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47443 * 300.00717 * 5 3 2 31 31 H 1.09000 * 109.47334 * 54.99375 * 6 3 2 32 32 H 1.09000 * 109.47609 * 174.99359 * 6 3 2 33 33 H 0.96998 * 119.99893 * 354.88023 * 9 7 6 34 34 H 1.08004 * 119.76390 * 0.02562 * 11 10 9 35 35 H 1.07999 * 119.85786 * 179.97438 * 12 11 10 36 36 H 0.97001 * 120.00029 * 180.02562 * 19 18 16 37 37 H 1.07998 * 120.14794 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 0.5138 5 6 2.2178 1.7713 -1.4426 6 6 3.3588 1.2634 0.7213 7 6 3.1415 0.9239 2.1733 8 8 2.0184 0.7346 2.5904 9 7 4.1951 0.8304 3.0086 10 6 3.9870 0.6214 4.3773 11 6 4.8971 -0.1378 5.1105 12 6 4.7031 -0.3514 6.4638 13 6 3.6047 0.1867 7.1029 14 9 3.4188 -0.0247 8.4243 15 6 2.6762 0.9568 6.3726 16 6 1.5483 1.5113 7.0180 17 1 1.1273 1.0229 7.8842 18 6 0.9766 2.6936 6.5346 19 7 1.6026 3.4002 5.6285 20 14 -0.6801 3.2630 7.1829 21 1 -0.5895 3.4816 8.6488 22 1 -1.0624 4.5336 6.5161 23 1 -1.7054 2.2267 6.8994 24 6 2.8832 1.1729 4.9983 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.2570 1.8014 -1.9564 29 1 2.6614 2.7669 -1.4426 30 1 2.8830 1.0773 -1.9563 31 1 3.9931 0.5053 0.2619 32 1 3.8427 2.2371 0.6443 33 1 5.0975 0.9081 2.6615 34 1 5.7603 -0.5619 4.6191 35 1 5.4145 -0.9417 7.0224 36 1 1.2065 4.2199 5.2937 37 1 2.1809 1.7652 4.4306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181579048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = -116.304680 kcal Electronic energy + Delta-G solvation = -22063.957509 eV Core-core repulsion = 18527.379462 eV Total energy + Delta-G solvation = -3536.578048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.16278 -39.72418 -38.00823 -36.79886 -34.25622 -33.17935 -32.70101 -29.75430 -28.86431 -27.11366 -26.29875 -25.36684 -22.24977 -21.45554 -20.58695 -19.50768 -17.80621 -16.80742 -16.57107 -16.01238 -15.91648 -15.11651 -14.92587 -14.83444 -14.59683 -14.04469 -13.93203 -13.47018 -12.97475 -12.80114 -12.62700 -12.52643 -12.11097 -11.95466 -11.78207 -11.64114 -11.58862 -11.32218 -11.12701 -10.94121 -10.64951 -10.47219 -10.27482 -9.72578 -9.47151 -9.40164 -9.17455 -8.80295 -7.50930 -6.87108 -6.70104 -4.41318 2.51640 2.79761 3.07411 3.11310 3.14417 3.37880 3.70932 3.92620 3.94425 4.58514 4.82091 4.95442 5.20001 5.40272 5.42880 5.46785 5.54834 5.56202 5.65936 5.71270 5.91564 5.92824 5.94344 6.10065 6.11697 6.40782 6.79131 6.92814 6.98202 7.18538 7.35723 7.45946 7.57321 7.70469 8.02511 8.13050 8.29099 8.50157 8.78055 8.83843 8.90637 10.17736 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.005984 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.180775 B = 4677.666922 C = 6005.223328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.099 3.901 4 H 0.070 0.930 5 C -0.173 4.173 6 C -0.138 4.138 7 C 0.506 3.494 8 O -0.506 6.506 9 N -0.671 5.671 10 C 0.136 3.864 11 C -0.239 4.239 12 C -0.111 4.111 13 C -0.038 4.038 14 F -0.164 7.164 15 C 0.094 3.906 16 C -0.449 4.449 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.792 5.792 20 Si 0.916 3.084 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.132 4.132 25 H 0.032 0.968 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.398 0.602 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.281 0.719 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 -0.078 -12.363 12.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.295 6.295 3 C 0.041 3.959 4 H 0.088 0.912 5 C -0.231 4.231 6 C -0.178 4.178 7 C 0.292 3.708 8 O -0.379 6.379 9 N -0.315 5.315 10 C 0.044 3.956 11 C -0.260 4.260 12 C -0.130 4.130 13 C -0.059 4.059 14 F -0.143 7.143 15 C 0.090 3.910 16 C -0.478 4.478 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.417 5.417 20 Si 0.740 3.260 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.153 4.153 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.231 0.769 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.370 -0.133 -12.194 12.271 hybrid contribution -0.285 0.535 0.266 0.662 sum 1.085 0.402 -11.928 11.984 Atomic orbital electron populations 1.22688 0.81132 1.02330 0.99720 1.87873 1.19742 1.26974 1.94929 1.21776 0.93835 0.85970 0.94337 0.91176 1.22295 1.02371 1.01529 0.96887 1.21829 0.98905 1.04087 0.93029 1.20463 0.85179 0.77544 0.87574 1.90749 1.23065 1.46829 1.77294 1.43418 1.08974 1.72338 1.06775 1.17616 0.98063 0.98653 0.81263 1.19871 1.03003 1.09124 0.94036 1.20240 0.96945 1.01336 0.94502 1.17919 0.99032 1.11482 0.77438 1.91264 1.95640 1.94340 1.33079 1.17515 0.91674 0.90401 0.91379 1.19457 1.09950 1.06315 1.12085 0.89966 1.25889 0.98699 0.95943 0.93785 1.69766 1.36677 1.12249 1.23033 0.86238 0.81600 0.78332 0.79839 1.18870 1.20258 1.18701 1.21298 0.98447 1.02333 0.93256 0.94937 0.90161 0.93264 0.92344 0.91553 0.91829 0.88427 0.87846 0.76886 0.88286 0.87806 0.90793 0.83447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.82 101.05 1.09 1.60 16 2 O -0.38 -5.86 9.58 -49.63 -0.48 -6.33 16 3 C 0.10 1.33 2.27 -26.73 -0.06 1.27 16 4 H 0.07 1.04 7.60 -51.93 -0.39 0.64 16 5 C -0.17 -1.69 9.53 37.16 0.35 -1.34 16 6 C -0.14 -1.78 5.41 -27.89 -0.15 -1.93 16 7 C 0.51 9.40 7.44 -10.99 -0.08 9.31 16 8 O -0.51 -11.75 13.13 -8.86 -0.12 -11.86 16 9 N -0.67 -12.28 5.34 -9.90 -0.05 -12.34 16 10 C 0.14 3.15 6.26 -83.74 -0.52 2.62 16 11 C -0.24 -5.18 9.96 -39.11 -0.39 -5.57 16 12 C -0.11 -2.54 10.00 -39.62 -0.40 -2.94 16 13 C -0.04 -1.00 7.31 -38.62 -0.28 -1.29 16 14 F -0.16 -4.26 16.75 2.25 0.04 -4.23 16 15 C 0.09 2.64 5.56 -106.78 -0.59 2.04 16 16 C -0.45 -12.55 8.76 -37.79 -0.33 -12.88 16 17 H 0.08 2.25 7.76 -52.49 -0.41 1.85 16 18 C 0.07 1.95 5.25 -17.34 -0.09 1.85 16 19 N -0.79 -20.91 10.82 55.55 0.60 -20.30 16 20 Si 0.92 19.54 29.57 -169.99 -5.03 14.52 16 21 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 24 C -0.13 -3.53 7.26 -38.71 -0.28 -3.81 16 25 H 0.03 0.35 7.87 -51.93 -0.41 -0.06 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 28 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.40 5.52 8.82 -40.82 -0.36 5.16 16 34 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 35 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 37 H 0.15 4.18 4.56 -52.49 -0.24 3.94 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -32.17 320.03 -6.68 -38.85 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.73 Total: 7.94 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.74 Total: -11.05 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.55 Total: -32.64 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.59 Total: -18.20 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.04 Total: -4.23 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.17 -6.68 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181579048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.459 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds