Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99537 * 2 1 4 4 H 1.09000 * 109.47693 * 29.99636 * 3 2 1 5 5 C 1.53005 * 109.46832 * 269.99071 * 3 2 1 6 6 C 1.52998 * 109.47060 * 149.99767 * 3 2 1 7 7 C 1.50696 * 109.47260 * 294.99667 * 6 3 2 8 8 O 1.21296 * 119.99964 * 359.97438 * 7 6 3 9 9 N 1.34775 * 120.00266 * 179.97438 * 7 6 3 10 10 C 1.40015 * 119.99802 * 174.87520 * 9 7 6 11 11 C 1.39367 * 119.90638 * 146.36524 * 10 9 7 12 12 C 1.38367 * 120.47079 * 179.97438 * 11 10 9 13 13 C 1.38007 * 120.28474 * 359.97438 * 12 11 10 14 14 F 1.35104 * 120.09409 * 179.97438 * 13 12 11 15 15 C 1.41012 * 119.81297 * 0.02562 * 13 12 11 16 16 C 1.41292 * 120.22435 * 179.97438 * 15 13 12 17 17 H 1.07994 * 120.00620 * 331.49567 * 16 15 13 18 18 C 1.39932 * 119.99425 * 151.49745 * 16 15 13 19 19 N 1.30850 * 119.99977 * 348.99610 * 18 16 15 20 20 Si 1.86799 * 119.99926 * 168.99741 * 18 16 15 21 21 H 1.48496 * 109.47212 * 59.99940 * 20 18 16 22 22 H 1.48496 * 109.46961 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47230 * 299.99891 * 20 18 16 24 24 C 1.38137 * 119.91105 * 326.09048 * 10 9 7 25 25 H 1.09000 * 109.46908 * 60.00919 * 1 2 3 26 26 H 1.09001 * 109.46406 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47615 * 300.00221 * 1 2 3 28 28 H 1.09000 * 109.46842 * 60.00819 * 5 3 2 29 29 H 1.08994 * 109.47134 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47443 * 300.00717 * 5 3 2 31 31 H 1.09000 * 109.47334 * 54.99375 * 6 3 2 32 32 H 1.09000 * 109.47609 * 174.99359 * 6 3 2 33 33 H 0.96998 * 119.99893 * 354.88023 * 9 7 6 34 34 H 1.08004 * 119.76390 * 0.02562 * 11 10 9 35 35 H 1.07999 * 119.85786 * 179.97438 * 12 11 10 36 36 H 0.97001 * 120.00029 * 180.02562 * 19 18 16 37 37 H 1.07998 * 120.14794 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 0.5138 5 6 2.2178 1.7713 -1.4426 6 6 3.3588 1.2634 0.7213 7 6 3.1415 0.9239 2.1733 8 8 2.0184 0.7346 2.5904 9 7 4.1951 0.8304 3.0086 10 6 3.9870 0.6214 4.3773 11 6 4.8971 -0.1378 5.1105 12 6 4.7031 -0.3514 6.4638 13 6 3.6047 0.1867 7.1029 14 9 3.4188 -0.0247 8.4243 15 6 2.6762 0.9568 6.3726 16 6 1.5483 1.5113 7.0180 17 1 1.1273 1.0229 7.8842 18 6 0.9766 2.6936 6.5346 19 7 1.6026 3.4002 5.6285 20 14 -0.6801 3.2630 7.1829 21 1 -0.5895 3.4816 8.6488 22 1 -1.0624 4.5336 6.5161 23 1 -1.7054 2.2267 6.8994 24 6 2.8832 1.1729 4.9983 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.2570 1.8014 -1.9564 29 1 2.6614 2.7669 -1.4426 30 1 2.8830 1.0773 -1.9563 31 1 3.9931 0.5053 0.2619 32 1 3.8427 2.2371 0.6443 33 1 5.0975 0.9081 2.6615 34 1 5.7603 -0.5619 4.6191 35 1 5.4145 -0.9417 7.0224 36 1 1.2065 4.2199 5.2937 37 1 2.1809 1.7652 4.4306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181579048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = -137.171371 kcal Electronic energy + Delta-G solvation = -22064.862357 eV Core-core repulsion = 18527.379462 eV Total energy + Delta-G solvation = -3537.482895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.17886 -41.23446 -39.34694 -38.41444 -36.07283 -34.94610 -33.77977 -31.68887 -30.32333 -28.41495 -27.46576 -27.27376 -23.83474 -23.10519 -22.04874 -21.06297 -19.63342 -18.13496 -17.95799 -17.81424 -17.68893 -16.80766 -16.41234 -16.06508 -16.03824 -15.91616 -15.63572 -14.94532 -14.58515 -14.34846 -13.87989 -13.72735 -13.62271 -13.52795 -13.43150 -13.01775 -12.91849 -12.83550 -12.67267 -12.32121 -12.28564 -12.14592 -11.65326 -11.59186 -11.27235 -10.85645 -10.59457 -10.45357 -9.45955 -8.75513 -8.57826 -6.46723 0.66580 0.91383 1.30706 1.42660 1.43813 1.85585 2.15776 2.31198 2.66844 2.89653 3.52053 3.77497 3.88871 4.04845 4.22764 4.32501 4.40452 4.46551 4.57784 4.62851 4.64664 4.73943 4.82543 4.91563 4.98558 5.03900 5.06923 5.15189 5.24714 5.33598 5.63479 5.77065 5.80099 6.06422 6.21088 6.31035 6.52613 6.71267 6.79440 6.88017 7.45383 8.26543 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.005984 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.180775 B = 4677.666922 C = 6005.223328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.400 6.400 3 C 0.091 3.909 4 H 0.044 0.956 5 C -0.162 4.162 6 C -0.126 4.126 7 C 0.497 3.503 8 O -0.559 6.559 9 N -0.660 5.660 10 C 0.139 3.861 11 C -0.221 4.221 12 C -0.107 4.107 13 C -0.072 4.072 14 F -0.171 7.171 15 C 0.060 3.940 16 C -0.495 4.495 17 H 0.069 0.931 18 C 0.034 3.966 19 N -0.818 5.818 20 Si 0.983 3.017 21 H -0.257 1.257 22 H -0.259 1.259 23 H -0.264 1.264 24 C -0.159 4.159 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.422 0.578 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.288 0.712 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 -0.026 -14.602 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.320 6.320 3 C 0.032 3.968 4 H 0.062 0.938 5 C -0.220 4.220 6 C -0.166 4.166 7 C 0.286 3.714 8 O -0.436 6.436 9 N -0.306 5.306 10 C 0.045 3.955 11 C -0.242 4.242 12 C -0.126 4.126 13 C -0.092 4.092 14 F -0.150 7.150 15 C 0.056 3.944 16 C -0.525 4.525 17 H 0.087 0.913 18 C -0.181 4.181 19 N -0.444 5.444 20 Si 0.803 3.197 21 H -0.181 1.181 22 H -0.183 1.183 23 H -0.189 1.189 24 C -0.181 4.181 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.146 0.854 32 H 0.157 0.843 33 H 0.261 0.739 34 H 0.165 0.835 35 H 0.157 0.843 36 H 0.099 0.901 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.138 -0.077 -14.468 14.805 hybrid contribution -0.684 0.432 0.882 1.197 sum 2.454 0.355 -13.586 13.810 Atomic orbital electron populations 1.22727 0.80591 1.02930 0.99622 1.87818 1.20531 1.28457 1.95166 1.21987 0.93443 0.84727 0.96597 0.93751 1.22210 1.03087 1.02734 0.93942 1.21939 0.99483 1.06799 0.88341 1.21611 0.84205 0.75893 0.89726 1.90743 1.25299 1.48915 1.78660 1.43383 1.10604 1.71803 1.04854 1.17789 0.96844 0.97283 0.83583 1.20399 1.03421 1.06933 0.93492 1.20670 0.96085 1.00506 0.95337 1.18284 1.00429 1.12978 0.77522 1.91227 1.95835 1.94480 1.33478 1.17898 0.92530 0.91522 0.92426 1.19626 1.11801 1.08047 1.12991 0.91259 1.26713 1.02102 0.95368 0.93903 1.69816 1.38105 1.12642 1.23834 0.85240 0.76592 0.78278 0.79564 1.18118 1.18325 1.18897 1.21189 1.00026 1.03935 0.92955 0.92241 0.89308 0.96094 0.92057 0.89534 0.90632 0.85402 0.84308 0.73949 0.83453 0.84327 0.90149 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.01 10.82 113.37 1.23 2.24 16 2 O -0.40 -12.15 9.58 -135.21 -1.30 -13.45 16 3 C 0.09 2.28 2.27 30.60 0.07 2.35 16 4 H 0.04 1.32 7.60 -2.39 -0.02 1.31 16 5 C -0.16 -2.64 9.53 71.98 0.69 -1.95 16 6 C -0.13 -2.88 5.41 29.85 0.16 -2.71 16 7 C 0.50 17.94 7.44 87.66 0.65 18.59 16 8 O -0.56 -26.74 13.13 10.69 0.14 -26.60 16 9 N -0.66 -22.80 5.34 -303.61 -1.62 -24.43 16 10 C 0.14 6.29 6.26 38.08 0.24 6.53 16 11 C -0.22 -8.98 9.96 22.57 0.22 -8.76 16 12 C -0.11 -4.73 10.00 22.25 0.22 -4.51 16 13 C -0.07 -3.85 7.31 22.90 0.17 -3.68 16 14 F -0.17 -9.17 16.75 44.97 0.75 -8.41 16 15 C 0.06 3.50 5.56 -21.26 -0.12 3.38 16 16 C -0.50 -29.35 8.76 23.43 0.21 -29.14 16 17 H 0.07 4.08 7.76 -2.91 -0.02 4.06 16 18 C 0.03 1.85 5.25 85.25 0.45 2.30 16 19 N -0.82 -44.97 10.82 21.83 0.24 -44.74 16 20 Si 0.98 41.47 29.57 68.60 2.03 43.49 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 24 C -0.16 -8.80 7.26 22.83 0.17 -8.64 16 25 H 0.06 1.24 7.87 -2.39 -0.02 1.22 16 26 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.02 0.66 8.08 -2.39 -0.02 0.64 16 28 H 0.06 0.97 7.87 -2.39 -0.02 0.95 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.42 10.11 8.82 -92.71 -0.82 9.30 16 34 H 0.15 4.56 8.06 -2.91 -0.02 4.53 16 35 H 0.14 5.11 8.06 -2.91 -0.02 5.09 16 36 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 37 H 0.13 7.45 4.56 -2.91 -0.01 7.44 16 Total: -1.00 -75.78 320.03 4.87 -70.91 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.28 Total: 27.22 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 4.35 Total: -24.00 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -1.39 Total: -69.16 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -1.16 Total: -40.05 kcal Atomic # 9 Polarization: -9.17 SS G_CDS: 0.75 Total: -8.41 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -75.78 4.87 -70.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181579048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.258 kcal (2) G-P(sol) polarization free energy of solvation -75.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds