Wall clock time and date at job start Tue Mar 31 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47017 * 2 1 4 4 C 1.53001 * 109.46909 * 120.00360 * 2 1 3 5 5 O 1.45204 * 109.46994 * 174.99945 * 4 2 1 6 6 C 1.34647 * 117.00185 * 179.97438 * 5 4 2 7 7 O 1.21514 * 119.99972 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00162 * 179.97438 * 6 5 4 9 9 C 1.40039 * 119.99884 * 175.68339 * 8 6 5 10 10 C 1.39361 * 119.90922 * 215.20574 * 9 8 6 11 11 C 1.38374 * 120.46980 * 180.02562 * 10 9 8 12 12 C 1.38004 * 120.28441 * 359.97438 * 11 10 9 13 13 F 1.35097 * 120.09203 * 179.97438 * 12 11 10 14 14 C 1.41006 * 119.81381 * 0.02562 * 12 11 10 15 15 C 1.41295 * 120.23047 * 179.97438 * 14 12 11 16 16 H 1.07998 * 119.99764 * 324.96295 * 15 14 12 17 17 C 1.39925 * 119.99950 * 145.23825 * 15 14 12 18 18 N 1.30854 * 119.99907 * 4.44517 * 17 15 14 19 19 Si 1.86799 * 119.99896 * 184.44761 * 17 15 14 20 20 H 1.48504 * 109.47083 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46953 * 119.99892 * 19 17 15 22 22 H 1.48498 * 109.47128 * 240.00109 * 19 17 15 23 23 C 1.38137 * 119.90942 * 35.49190 * 9 8 6 24 24 H 1.08992 * 109.47064 * 299.99713 * 1 2 3 25 25 H 1.08996 * 109.47009 * 59.99950 * 1 2 3 26 26 H 1.09004 * 109.46932 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47099 * 240.00137 * 2 1 3 28 28 H 1.09002 * 109.46629 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47272 * 299.99889 * 3 2 1 30 30 H 1.09002 * 109.47075 * 60.00122 * 3 2 1 31 31 H 1.08995 * 109.47507 * 55.00028 * 4 2 1 32 32 H 1.08999 * 109.46853 * 294.99725 * 4 2 1 33 33 H 0.96998 * 119.99913 * 355.68842 * 8 6 5 34 34 H 1.07993 * 119.76269 * 0.03184 * 10 9 8 35 35 H 1.07998 * 119.85329 * 179.97438 * 11 10 9 36 36 H 0.96999 * 119.99992 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.14192 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4871 -0.8256 1.1911 6 6 4.0978 -1.4384 2.2228 7 8 3.4395 -1.8747 3.1462 8 7 5.4393 -1.5689 2.2307 9 6 6.0821 -2.1247 3.3438 10 6 7.3338 -1.6506 3.7318 11 6 7.9797 -2.1917 4.8295 12 6 7.3896 -3.2079 5.5531 13 9 8.0238 -3.7336 6.6238 14 6 6.1233 -3.6966 5.1712 15 6 5.5112 -4.7371 5.9054 16 1 6.1160 -5.5192 6.3403 17 6 4.1212 -4.7575 6.0642 18 7 3.3806 -3.8631 5.4609 19 14 3.3227 -6.0614 7.1374 20 1 4.3716 -6.9480 7.7022 21 1 2.5801 -5.4053 8.2434 22 1 2.3817 -6.8677 6.3192 23 6 5.4763 -3.1452 4.0507 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -1.7199 1.2951 32 1 1.7516 -0.1584 2.1369 33 1 5.9594 -1.2779 1.4655 34 1 7.8031 -0.8553 3.1718 35 1 8.9497 -1.8170 5.1211 36 1 2.4170 -3.8774 5.5707 37 1 4.5081 -3.5150 3.7470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193845622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:46 Heat of formation + Delta-G solvation = -116.848443 kcal Electronic energy + Delta-G solvation = -21803.965337 eV Core-core repulsion = 18267.363710 eV Total energy + Delta-G solvation = -3536.601627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -47.19356 -40.10294 -37.94946 -36.42482 -34.78809 -34.27619 -33.15460 -29.73194 -28.20279 -27.30546 -26.37521 -25.33247 -22.15946 -21.31221 -20.34338 -19.97730 -18.38370 -17.35634 -16.44801 -16.23262 -15.97403 -15.28333 -15.03623 -14.71313 -14.32713 -14.07284 -13.95762 -13.31143 -12.99718 -12.76314 -12.53348 -12.45049 -12.24761 -11.84736 -11.78924 -11.46718 -11.27069 -11.22132 -11.12547 -10.96694 -10.79646 -10.62059 -10.38921 -10.15529 -9.73733 -9.44728 -9.18042 -9.02737 -7.45060 -6.94094 -6.50320 -4.39870 2.42828 2.69060 2.80523 3.11660 3.14460 3.19839 3.55164 4.00545 4.51199 4.65595 4.73571 4.77253 5.09131 5.40542 5.42702 5.44034 5.51641 5.60975 5.70871 5.80622 5.87477 5.89928 6.09064 6.10912 6.18000 6.36581 6.61872 6.72844 6.92735 7.02338 7.25268 7.42205 7.52657 7.71050 8.02897 8.10191 8.30089 8.53379 8.84876 8.85927 9.02322 10.30559 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.005144 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.337115 B = 5442.354445 C = 6985.272221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.147 4.147 4 C 0.093 3.907 5 O -0.379 6.379 6 C 0.626 3.374 7 O -0.513 6.513 8 N -0.648 5.648 9 C 0.142 3.858 10 C -0.231 4.231 11 C -0.114 4.114 12 C -0.030 4.030 13 F -0.162 7.162 14 C 0.091 3.909 15 C -0.456 4.456 16 H 0.081 0.919 17 C 0.066 3.934 18 N -0.769 5.769 19 Si 0.914 3.086 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.131 4.131 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.403 0.597 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.280 0.720 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.106 6.715 -10.359 13.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.204 4.204 4 C 0.018 3.982 5 O -0.295 6.295 6 C 0.378 3.622 7 O -0.397 6.397 8 N -0.299 5.299 9 C 0.051 3.949 10 C -0.253 4.253 11 C -0.134 4.134 12 C -0.050 4.050 13 F -0.142 7.142 14 C 0.087 3.913 15 C -0.486 4.486 16 H 0.099 0.901 17 C -0.153 4.153 18 N -0.393 5.393 19 Si 0.739 3.261 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.200 1.200 23 C -0.152 4.152 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.237 0.763 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.806 6.594 -9.918 12.843 hybrid contribution -0.107 -0.334 0.369 0.509 sum -4.913 6.260 -9.548 12.430 Atomic orbital electron populations 1.21769 0.93822 1.02341 1.02341 1.21167 0.95762 0.96895 0.97613 1.21825 1.01947 0.95071 1.01546 1.22960 0.75544 1.01141 0.98575 1.86143 1.23856 1.73869 1.45599 1.18286 0.83683 0.78790 0.81407 1.91243 1.63608 1.49711 1.35133 1.41902 1.03399 1.64652 1.19932 1.17474 0.92972 0.95559 0.88917 1.19861 0.97212 1.05994 1.02187 1.20238 0.99189 0.97590 0.96374 1.18043 0.96643 1.00598 0.89760 1.91271 1.81883 1.86413 1.54596 1.17549 0.89098 0.93341 0.91323 1.19444 0.91856 1.08362 1.28919 0.90119 1.25964 0.97522 0.96127 0.95654 1.69873 1.06917 1.29308 1.33165 0.86159 0.79398 0.80671 0.79899 1.18482 1.19895 1.19964 1.21728 1.02726 0.96042 0.94716 0.92229 0.91876 0.92224 0.90184 0.91864 0.92710 0.92669 0.91257 0.91295 0.76331 0.88077 0.87628 0.90822 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 2 C -0.10 -0.99 3.16 -90.62 -0.29 -1.27 16 3 C -0.15 -1.42 9.09 37.16 0.34 -1.08 16 4 C 0.09 1.29 4.85 37.16 0.18 1.47 16 5 O -0.38 -6.19 9.81 -40.34 -0.40 -6.58 16 6 C 0.63 12.61 8.59 54.06 0.46 13.07 16 7 O -0.51 -12.38 13.50 -19.28 -0.26 -12.64 16 8 N -0.65 -12.38 5.34 -14.30 -0.08 -12.45 16 9 C 0.14 3.24 6.29 -83.73 -0.53 2.71 16 10 C -0.23 -4.89 9.97 -39.11 -0.39 -5.28 16 11 C -0.11 -2.56 10.00 -39.62 -0.40 -2.95 16 12 C -0.03 -0.77 7.31 -38.62 -0.28 -1.05 16 13 F -0.16 -4.14 16.82 2.25 0.04 -4.11 16 14 C 0.09 2.49 5.55 -106.78 -0.59 1.90 16 15 C -0.46 -12.58 8.69 -37.79 -0.33 -12.91 16 16 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 17 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 18 N -0.77 -20.75 10.54 55.55 0.59 -20.17 16 19 Si 0.91 19.59 29.56 -169.99 -5.03 14.56 16 20 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 C -0.13 -3.45 7.30 -38.71 -0.28 -3.73 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.40 6.09 8.93 -40.82 -0.36 5.72 16 34 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 36 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 37 H 0.16 4.48 4.34 -52.49 -0.23 4.25 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -30.31 320.78 -6.93 -37.23 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.77 Total: 7.70 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.86 Total: -8.38 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.51 Total: -32.62 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.66 Total: -19.23 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.31 -6.93 -37.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193845622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.615 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds