Wall clock time and date at job start Tue Mar 31 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47017 * 2 1 4 4 C 1.53001 * 109.46909 * 120.00360 * 2 1 3 5 5 O 1.45204 * 109.46994 * 174.99945 * 4 2 1 6 6 C 1.34647 * 117.00185 * 179.97438 * 5 4 2 7 7 O 1.21514 * 119.99972 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00162 * 179.97438 * 6 5 4 9 9 C 1.40039 * 119.99884 * 175.68339 * 8 6 5 10 10 C 1.39361 * 119.90922 * 215.20574 * 9 8 6 11 11 C 1.38374 * 120.46980 * 180.02562 * 10 9 8 12 12 C 1.38004 * 120.28441 * 359.97438 * 11 10 9 13 13 F 1.35097 * 120.09203 * 179.97438 * 12 11 10 14 14 C 1.41006 * 119.81381 * 0.02562 * 12 11 10 15 15 C 1.41295 * 120.23047 * 179.97438 * 14 12 11 16 16 H 1.07998 * 119.99764 * 324.96295 * 15 14 12 17 17 C 1.39925 * 119.99950 * 145.23825 * 15 14 12 18 18 N 1.30854 * 119.99907 * 4.44517 * 17 15 14 19 19 Si 1.86799 * 119.99896 * 184.44761 * 17 15 14 20 20 H 1.48504 * 109.47083 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46953 * 119.99892 * 19 17 15 22 22 H 1.48498 * 109.47128 * 240.00109 * 19 17 15 23 23 C 1.38137 * 119.90942 * 35.49190 * 9 8 6 24 24 H 1.08992 * 109.47064 * 299.99713 * 1 2 3 25 25 H 1.08996 * 109.47009 * 59.99950 * 1 2 3 26 26 H 1.09004 * 109.46932 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47099 * 240.00137 * 2 1 3 28 28 H 1.09002 * 109.46629 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47272 * 299.99889 * 3 2 1 30 30 H 1.09002 * 109.47075 * 60.00122 * 3 2 1 31 31 H 1.08995 * 109.47507 * 55.00028 * 4 2 1 32 32 H 1.08999 * 109.46853 * 294.99725 * 4 2 1 33 33 H 0.96998 * 119.99913 * 355.68842 * 8 6 5 34 34 H 1.07993 * 119.76269 * 0.03184 * 10 9 8 35 35 H 1.07998 * 119.85329 * 179.97438 * 11 10 9 36 36 H 0.96999 * 119.99992 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.14192 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4871 -0.8256 1.1911 6 6 4.0978 -1.4384 2.2228 7 8 3.4395 -1.8747 3.1462 8 7 5.4393 -1.5689 2.2307 9 6 6.0821 -2.1247 3.3438 10 6 7.3338 -1.6506 3.7318 11 6 7.9797 -2.1917 4.8295 12 6 7.3896 -3.2079 5.5531 13 9 8.0238 -3.7336 6.6238 14 6 6.1233 -3.6966 5.1712 15 6 5.5112 -4.7371 5.9054 16 1 6.1160 -5.5192 6.3403 17 6 4.1212 -4.7575 6.0642 18 7 3.3806 -3.8631 5.4609 19 14 3.3227 -6.0614 7.1374 20 1 4.3716 -6.9480 7.7022 21 1 2.5801 -5.4053 8.2434 22 1 2.3817 -6.8677 6.3192 23 6 5.4763 -3.1452 4.0507 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -1.7199 1.2951 32 1 1.7516 -0.1584 2.1369 33 1 5.9594 -1.2779 1.4655 34 1 7.8031 -0.8553 3.1718 35 1 8.9497 -1.8170 5.1211 36 1 2.4170 -3.8774 5.5707 37 1 4.5081 -3.5150 3.7470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193845622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:44 Heat of formation + Delta-G solvation = -134.939586 kcal Electronic energy + Delta-G solvation = -21804.749828 eV Core-core repulsion = 18267.363710 eV Total energy + Delta-G solvation = -3537.386118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.17074 -41.67624 -39.58449 -37.87071 -36.10559 -35.92075 -34.97484 -31.64902 -29.94779 -28.03704 -27.62170 -27.21503 -23.87708 -23.11426 -21.72934 -21.24123 -20.03691 -19.14257 -18.01750 -17.88407 -17.70467 -16.91710 -16.79892 -16.05838 -15.98650 -15.83541 -15.13558 -14.78692 -14.52115 -14.35609 -13.95045 -13.70272 -13.60010 -13.39693 -13.31531 -12.96657 -12.95181 -12.77896 -12.48668 -12.16075 -12.10847 -12.04761 -11.68873 -11.57746 -11.44821 -11.24808 -11.06097 -10.81207 -9.37424 -8.79778 -8.40507 -6.43783 0.61854 0.92269 1.18886 1.35379 1.43094 1.51584 1.90268 2.21512 2.74717 3.23108 3.47966 3.80534 3.86554 4.04275 4.16368 4.35363 4.39219 4.49526 4.63690 4.65096 4.79930 4.94995 4.98513 5.00096 5.00955 5.06414 5.17533 5.26973 5.30810 5.40699 5.49198 5.61410 5.73702 5.80602 6.11454 6.22865 6.53545 6.58982 6.87034 6.89321 7.46484 8.38745 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.005144 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.337115 B = 5442.354445 C = 6985.272221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.086 3.914 5 O -0.364 6.364 6 C 0.626 3.374 7 O -0.556 6.556 8 N -0.634 5.634 9 C 0.145 3.855 10 C -0.208 4.208 11 C -0.108 4.108 12 C -0.058 4.058 13 F -0.168 7.168 14 C 0.058 3.942 15 C -0.498 4.498 16 H 0.070 0.930 17 C 0.025 3.975 18 N -0.800 5.800 19 Si 0.985 3.015 20 H -0.260 1.260 21 H -0.267 1.267 22 H -0.263 1.263 23 C -0.155 4.155 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.425 0.575 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.282 0.718 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 8.250 -11.863 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.203 4.203 4 C 0.011 3.989 5 O -0.278 6.278 6 C 0.379 3.621 7 O -0.443 6.443 8 N -0.288 5.288 9 C 0.052 3.948 10 C -0.229 4.229 11 C -0.128 4.128 12 C -0.078 4.078 13 F -0.148 7.148 14 C 0.055 3.945 15 C -0.528 4.528 16 H 0.088 0.912 17 C -0.190 4.190 18 N -0.425 5.425 19 Si 0.805 3.195 20 H -0.184 1.184 21 H -0.192 1.192 22 H -0.188 1.188 23 C -0.177 4.177 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.263 0.737 34 H 0.168 0.832 35 H 0.161 0.839 36 H 0.093 0.907 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.502 8.161 -11.480 14.788 hybrid contribution -0.126 -0.669 0.698 0.976 sum -4.628 7.492 -10.782 13.921 Atomic orbital electron populations 1.21780 0.92172 1.02698 1.03372 1.21204 0.96931 0.96891 0.95621 1.21825 1.01237 0.94636 1.02574 1.23301 0.74012 1.01116 1.00446 1.86179 1.25247 1.72760 1.43627 1.18460 0.83851 0.78285 0.81487 1.91239 1.64631 1.51378 1.37035 1.41693 1.03339 1.63931 1.19796 1.17578 0.93492 0.94437 0.89253 1.20367 0.95865 1.05521 1.01153 1.20662 1.00432 0.95912 0.95757 1.18387 0.96748 1.02094 0.90584 1.91241 1.81801 1.86736 1.54985 1.17885 0.90404 0.94185 0.92049 1.19595 0.92968 1.09289 1.30915 0.91201 1.26781 0.97470 0.98145 0.96610 1.69995 1.07025 1.30979 1.34505 0.85118 0.78317 0.77892 0.78126 1.18392 1.19184 1.18762 1.21593 1.02419 0.97999 0.95672 0.92314 0.89713 0.92280 0.89461 0.92948 0.90467 0.92906 0.92228 0.92232 0.73690 0.83225 0.83927 0.90736 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.19 71.98 0.66 -1.47 16 2 C -0.09 -1.65 3.16 -10.79 -0.03 -1.69 16 3 C -0.15 -2.50 9.09 71.98 0.65 -1.85 16 4 C 0.09 2.36 4.85 71.98 0.35 2.71 16 5 O -0.36 -11.56 9.81 -55.56 -0.55 -12.10 16 6 C 0.63 25.06 8.59 129.79 1.11 26.17 16 7 O -0.56 -27.59 13.50 19.80 0.27 -27.32 16 8 N -0.63 -23.23 5.34 -429.56 -2.30 -25.53 16 9 C 0.15 6.45 6.29 38.08 0.24 6.69 16 10 C -0.21 -8.12 9.97 22.57 0.22 -7.89 16 11 C -0.11 -4.58 10.00 22.25 0.22 -4.36 16 12 C -0.06 -2.98 7.31 22.89 0.17 -2.81 16 13 F -0.17 -8.71 16.82 44.97 0.76 -7.95 16 14 C 0.06 3.31 5.55 -21.26 -0.12 3.19 16 15 C -0.50 -28.79 8.69 23.43 0.20 -28.58 16 16 H 0.07 4.00 7.84 -2.91 -0.02 3.98 16 17 C 0.03 1.37 5.42 85.25 0.46 1.84 16 18 N -0.80 -45.13 10.54 21.82 0.23 -44.90 16 19 Si 0.98 41.51 29.56 68.60 2.03 43.54 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 23 C -0.16 -8.39 7.30 22.83 0.17 -8.22 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.42 11.59 8.93 -92.71 -0.83 10.76 16 34 H 0.15 4.44 8.06 -2.91 -0.02 4.41 16 35 H 0.14 4.95 8.06 -2.91 -0.02 4.93 16 36 H 0.28 14.80 8.30 -92.71 -0.77 14.03 16 37 H 0.14 8.00 4.34 -2.91 -0.01 7.99 16 Total: -1.00 -68.93 320.78 5.02 -63.91 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.27 Total: 26.62 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 4.31 Total: -16.27 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -2.07 Total: -70.43 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.28 Total: -39.42 kcal Atomic # 9 Polarization: -8.71 SS G_CDS: 0.76 Total: -7.95 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -68.93 5.02 -63.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193845622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.028 kcal (2) G-P(sol) polarization free energy of solvation -68.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds