Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.66195 * 2 1 4 4 C 1.53190 * 109.56900 * 120.29809 * 2 1 3 5 5 C 1.50709 * 109.05455 * 176.66070 * 4 2 1 6 6 O 1.21430 * 119.75665 * 151.26774 * 5 4 2 7 7 C 1.40819 * 120.48363 * 331.24681 * 5 4 2 8 8 C 1.34830 * 121.58422 * 359.76439 * 7 5 4 9 9 C 1.47063 * 119.40529 * 179.72634 * 8 7 5 10 10 C 1.40294 * 119.60197 * 115.00165 * 9 8 7 11 11 C 1.37600 * 121.12029 * 179.97438 * 10 9 8 12 12 C 1.39619 * 120.25682 * 0.02562 * 11 10 9 13 13 C 1.43205 * 120.39657 * 179.97438 * 12 11 10 14 14 N 9.02696 * 127.15306 * 262.17483 * 2 1 3 15 15 C 1.46527 * 119.20360 * 359.97438 * 12 11 10 16 16 C 1.40840 * 120.52888 * 179.97438 * 15 12 11 17 17 H 1.07998 * 120.00144 * 334.64103 * 16 15 12 18 18 C 1.40261 * 120.00334 * 154.63528 * 16 15 12 19 19 N 1.30644 * 119.99598 * 334.67337 * 18 16 15 20 20 Si 1.86791 * 120.00069 * 154.66520 * 18 16 15 21 21 H 1.48497 * 109.47357 * 270.00504 * 20 18 16 22 22 H 1.48503 * 109.46958 * 150.00596 * 20 18 16 23 23 H 1.48500 * 109.47430 * 30.00782 * 20 18 16 24 24 C 1.39165 * 119.59763 * 295.23203 * 9 8 7 25 25 C 1.50525 * 121.18776 * 359.97438 * 8 7 5 26 26 H 1.08995 * 109.46953 * 299.69679 * 1 2 3 27 27 H 1.08993 * 109.47008 * 59.70234 * 1 2 3 28 28 H 1.08999 * 109.46726 * 179.69902 * 1 2 3 29 29 H 1.08996 * 109.54407 * 56.78533 * 4 2 1 30 30 H 1.09002 * 109.61396 * 296.57714 * 4 2 1 31 31 H 1.07996 * 119.20532 * 179.75081 * 7 5 4 32 32 H 1.08004 * 119.44455 * 359.95276 * 10 9 8 33 33 H 1.08002 * 119.87254 * 180.02562 * 11 10 9 34 34 H 0.97003 * 120.00595 * 354.21161 * 19 18 16 35 35 H 1.08002 * 120.15712 * 0.05022 * 24 9 8 36 36 H 1.09000 * 109.46204 * 149.56237 * 25 8 7 37 37 H 1.09001 * 109.46483 * 269.53719 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8969 1.0265 0.0000 4 6 2.0432 -0.7282 1.2463 5 6 3.5479 -0.7934 1.1934 6 8 4.1863 -0.8288 2.2258 7 6 4.2190 -0.8141 -0.0444 8 6 3.5469 -0.7814 -1.2127 9 6 4.2966 -0.7990 -2.4778 10 6 4.1671 -1.8943 -3.3449 11 6 4.8535 -1.9429 -4.5365 12 6 5.6980 -0.8940 -4.9053 13 6 6.4142 -0.9418 -6.1445 14 7 6.9819 -0.9796 -7.1277 15 6 5.8427 0.2562 -4.0092 16 6 6.6874 1.3293 -4.3532 17 1 7.5192 1.1686 -5.0230 18 6 6.4483 2.6070 -3.8261 19 7 5.2436 2.9427 -3.4483 20 14 7.8524 3.8283 -3.6643 21 1 8.4942 3.6714 -2.3344 22 1 7.3247 5.2098 -3.7994 23 1 8.8544 3.5747 -4.7305 24 6 5.1295 0.2689 -2.7980 25 6 2.0432 -0.7218 -1.2455 26 1 -0.3633 0.5091 0.8927 27 1 -0.3633 0.5184 -0.8872 28 1 -0.3633 -1.0277 -0.0054 29 1 1.6352 -1.7386 1.2721 30 1 1.7329 -0.1869 2.1401 31 1 5.2981 -0.8569 -0.0582 32 1 3.5180 -2.7133 -3.0725 33 1 4.7385 -2.7958 -5.1891 34 1 4.4996 2.3414 -3.6089 35 1 5.2249 1.1047 -2.1207 36 1 1.7204 -0.1833 -2.1366 37 1 1.6399 -1.7342 -1.2670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242741520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -7.687077 kcal Electronic energy + Delta-G solvation = -20753.294836 eV Core-core repulsion = 17652.196025 eV Total energy + Delta-G solvation = -3101.098810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.00335 -38.19800 -36.80614 -35.31243 -34.53591 -32.98297 -30.02435 -29.74032 -28.48549 -26.85944 -25.70458 -23.63011 -21.51924 -20.92768 -20.66166 -18.49003 -17.82289 -17.09431 -16.03124 -15.45627 -15.14053 -14.76320 -14.50609 -14.26356 -14.04827 -13.57946 -13.32631 -12.97861 -12.70972 -12.63462 -12.48158 -12.28587 -12.13672 -12.06454 -11.73938 -11.57971 -11.37800 -11.09806 -10.87806 -10.82443 -10.74035 -10.58450 -10.27449 -9.97430 -9.40150 -9.35321 -8.95577 -8.11449 -7.87532 -7.55904 -4.92600 0.99021 1.86810 2.47703 2.99447 3.06041 3.17779 3.19131 3.72865 3.76984 3.85364 4.31297 4.38751 4.56202 4.75631 4.81169 5.11175 5.13983 5.26262 5.37067 5.39110 5.49281 5.50355 5.60556 5.67906 5.76005 5.94464 5.99183 6.05901 6.19114 6.27695 6.39395 6.49093 6.53139 6.73262 6.86207 7.09279 7.29904 7.35570 7.42107 7.60415 7.73857 7.79880 8.19779 8.31090 8.66953 9.57010 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.005536 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.512220 B = 5056.515368 C = 6063.659087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.081 0.919 4 C -0.164 4.164 5 C 0.393 3.607 6 O -0.481 6.481 7 C -0.262 4.262 8 C 0.051 3.949 9 C -0.026 4.026 10 C -0.243 4.243 11 C -0.015 4.015 12 C -0.185 4.185 13 C 0.297 3.703 14 N -0.504 5.504 15 C 0.126 3.874 16 C -0.475 4.475 17 H 0.087 0.913 18 C 0.038 3.962 19 N -0.762 5.762 20 Si 1.067 2.933 21 H -0.268 1.268 22 H -0.271 1.271 23 H -0.272 1.272 24 C -0.187 4.187 25 C -0.094 4.094 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.305 0.695 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.217 -2.534 6.823 11.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.099 0.901 4 C -0.201 4.201 5 C 0.276 3.724 6 O -0.360 6.360 7 C -0.280 4.280 8 C 0.049 3.951 9 C -0.027 4.027 10 C -0.263 4.263 11 C -0.036 4.036 12 C -0.191 4.191 13 C -0.013 4.013 14 N -0.183 5.183 15 C 0.121 3.879 16 C -0.502 4.502 17 H 0.105 0.895 18 C -0.188 4.188 19 N -0.383 5.383 20 Si 0.889 3.111 21 H -0.193 1.193 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.206 4.206 25 C -0.131 4.131 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.149 0.851 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.709 -1.075 6.387 10.068 hybrid contribution -0.607 -1.602 -0.298 1.738 sum -8.315 -2.677 6.089 10.648 Atomic orbital electron populations 1.21807 0.94151 1.02079 1.02209 1.21163 0.96247 1.00228 0.93014 0.90084 1.22205 0.95035 1.02959 0.99930 1.20955 0.91079 0.71475 0.88883 1.90554 1.69933 1.38312 1.37236 1.22136 1.01787 1.11378 0.92731 1.21524 0.94838 0.85518 0.93171 1.18619 0.96281 0.95432 0.92333 1.20033 1.09391 0.99709 0.97157 1.20415 0.93039 0.95129 0.94969 1.16898 1.08827 1.01966 0.91432 1.25756 0.91821 0.91346 0.92370 1.81034 1.12956 1.11021 1.13313 1.18331 0.89669 0.90727 0.89209 1.20887 1.10956 0.94374 1.23951 0.89535 1.27331 1.01264 0.99323 0.90858 1.70397 1.00959 1.39110 1.27796 0.83575 0.73760 0.75169 0.78599 1.19269 1.19552 1.19627 1.21295 1.02126 0.99523 0.97645 1.20843 0.91080 1.02005 0.99162 0.92373 0.92023 0.92426 0.88475 0.89120 0.85078 0.88035 0.87882 0.88097 0.86379 0.89149 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.21 37.16 0.34 -0.84 16 2 C -0.09 -0.93 2.76 -90.61 -0.25 -1.18 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.16 -1.83 5.38 -27.78 -0.15 -1.98 16 5 C 0.39 6.03 6.82 -33.33 -0.23 5.81 16 6 O -0.48 -8.94 17.82 5.43 0.10 -8.84 16 7 C -0.26 -4.23 9.25 -39.82 -0.37 -4.60 16 8 C 0.05 0.78 5.25 -102.34 -0.54 0.24 16 9 C -0.03 -0.47 5.23 -105.20 -0.55 -1.02 16 10 C -0.24 -4.31 9.67 -39.04 -0.38 -4.68 16 11 C -0.01 -0.28 9.73 -39.30 -0.38 -0.66 16 12 C -0.19 -4.05 5.95 -104.12 -0.62 -4.67 16 13 C 0.30 6.78 14.28 -22.47 -0.32 6.46 16 14 N -0.50 -11.92 18.54 41.84 0.78 -11.15 16 15 C 0.13 2.90 5.45 -104.70 -0.57 2.33 16 16 C -0.48 -11.29 8.49 -37.84 -0.32 -11.61 16 17 H 0.09 2.12 7.44 -52.49 -0.39 1.73 16 18 C 0.04 0.86 4.95 -17.30 -0.09 0.77 16 19 N -0.76 -17.52 12.32 55.56 0.68 -16.83 16 20 Si 1.07 19.65 30.00 -169.99 -5.10 14.55 16 21 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 22 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 23 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 24 C -0.19 -3.95 7.58 -38.36 -0.29 -4.24 16 25 C -0.09 -1.11 5.12 -28.06 -0.14 -1.26 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.13 2.32 8.04 -52.49 -0.42 1.90 16 32 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.30 7.03 6.69 -40.82 -0.27 6.76 16 35 H 0.12 2.61 6.52 -52.49 -0.34 2.27 16 36 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 325.03 15.07 4.90 4.90 Total: -1.00 -26.13 325.03 -7.95 -34.08 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.45 Total: 4.42 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -4.85 Total: -21.13 kcal Atomic # 7 Polarization: -29.44 SS G_CDS: 1.46 Total: -27.98 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.10 Total: -8.84 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.10 Total: 14.55 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.13 -7.95 -34.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242741520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.393 kcal (2) G-P(sol) polarization free energy of solvation -26.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds