Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.66195 * 2 1 4 4 C 1.53190 * 109.56900 * 120.29809 * 2 1 3 5 5 C 1.50709 * 109.05455 * 176.66070 * 4 2 1 6 6 O 1.21430 * 119.75665 * 151.26774 * 5 4 2 7 7 C 1.40819 * 120.48363 * 331.24681 * 5 4 2 8 8 C 1.34830 * 121.58422 * 359.76439 * 7 5 4 9 9 C 1.47063 * 119.40529 * 179.72634 * 8 7 5 10 10 C 1.40294 * 119.60197 * 115.00165 * 9 8 7 11 11 C 1.37600 * 121.12029 * 179.97438 * 10 9 8 12 12 C 1.39619 * 120.25682 * 0.02562 * 11 10 9 13 13 C 1.43205 * 120.39657 * 179.97438 * 12 11 10 14 14 N 9.02696 * 127.15306 * 262.17483 * 2 1 3 15 15 C 1.46527 * 119.20360 * 359.97438 * 12 11 10 16 16 C 1.40840 * 120.52888 * 179.97438 * 15 12 11 17 17 H 1.07998 * 120.00144 * 334.64103 * 16 15 12 18 18 C 1.40261 * 120.00334 * 154.63528 * 16 15 12 19 19 N 1.30644 * 119.99598 * 334.67337 * 18 16 15 20 20 Si 1.86791 * 120.00069 * 154.66520 * 18 16 15 21 21 H 1.48497 * 109.47357 * 270.00504 * 20 18 16 22 22 H 1.48503 * 109.46958 * 150.00596 * 20 18 16 23 23 H 1.48500 * 109.47430 * 30.00782 * 20 18 16 24 24 C 1.39165 * 119.59763 * 295.23203 * 9 8 7 25 25 C 1.50525 * 121.18776 * 359.97438 * 8 7 5 26 26 H 1.08995 * 109.46953 * 299.69679 * 1 2 3 27 27 H 1.08993 * 109.47008 * 59.70234 * 1 2 3 28 28 H 1.08999 * 109.46726 * 179.69902 * 1 2 3 29 29 H 1.08996 * 109.54407 * 56.78533 * 4 2 1 30 30 H 1.09002 * 109.61396 * 296.57714 * 4 2 1 31 31 H 1.07996 * 119.20532 * 179.75081 * 7 5 4 32 32 H 1.08004 * 119.44455 * 359.95276 * 10 9 8 33 33 H 1.08002 * 119.87254 * 180.02562 * 11 10 9 34 34 H 0.97003 * 120.00595 * 354.21161 * 19 18 16 35 35 H 1.08002 * 120.15712 * 0.05022 * 24 9 8 36 36 H 1.09000 * 109.46204 * 149.56237 * 25 8 7 37 37 H 1.09001 * 109.46483 * 269.53719 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8969 1.0265 0.0000 4 6 2.0432 -0.7282 1.2463 5 6 3.5479 -0.7934 1.1934 6 8 4.1863 -0.8288 2.2258 7 6 4.2190 -0.8141 -0.0444 8 6 3.5469 -0.7814 -1.2127 9 6 4.2966 -0.7990 -2.4778 10 6 4.1671 -1.8943 -3.3449 11 6 4.8535 -1.9429 -4.5365 12 6 5.6980 -0.8940 -4.9053 13 6 6.4142 -0.9418 -6.1445 14 7 6.9819 -0.9796 -7.1277 15 6 5.8427 0.2562 -4.0092 16 6 6.6874 1.3293 -4.3532 17 1 7.5192 1.1686 -5.0230 18 6 6.4483 2.6070 -3.8261 19 7 5.2436 2.9427 -3.4483 20 14 7.8524 3.8283 -3.6643 21 1 8.4942 3.6714 -2.3344 22 1 7.3247 5.2098 -3.7994 23 1 8.8544 3.5747 -4.7305 24 6 5.1295 0.2689 -2.7980 25 6 2.0432 -0.7218 -1.2455 26 1 -0.3633 0.5091 0.8927 27 1 -0.3633 0.5184 -0.8872 28 1 -0.3633 -1.0277 -0.0054 29 1 1.6352 -1.7386 1.2721 30 1 1.7329 -0.1869 2.1401 31 1 5.2981 -0.8569 -0.0582 32 1 3.5180 -2.7133 -3.0725 33 1 4.7385 -2.7958 -5.1891 34 1 4.4996 2.3414 -3.6089 35 1 5.2249 1.1047 -2.1207 36 1 1.7204 -0.1833 -2.1366 37 1 1.6399 -1.7342 -1.2670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242741520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -18.473852 kcal Electronic energy + Delta-G solvation = -20753.762585 eV Core-core repulsion = 17652.196025 eV Total energy + Delta-G solvation = -3101.566560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.20066 -39.76656 -38.05251 -37.06009 -36.10919 -34.25876 -31.56870 -31.21007 -29.65194 -27.76613 -27.35025 -25.06511 -23.03563 -22.18208 -21.81093 -20.15001 -19.13865 -18.52742 -17.35214 -16.73494 -16.33778 -16.22985 -15.94646 -15.52960 -15.30398 -15.19787 -14.76392 -14.35724 -14.26341 -14.00548 -13.80330 -13.60985 -13.49078 -13.08492 -13.06675 -12.85015 -12.75437 -12.60921 -12.22138 -12.06524 -12.03266 -11.68193 -11.57145 -11.51096 -11.05104 -10.57619 -10.26421 -9.75798 -9.56495 -9.22917 -6.69421 -0.33289 0.27832 0.86178 1.46016 1.57076 1.73269 1.93538 1.94469 2.18342 2.20915 2.57781 3.29700 3.37429 3.48815 3.57686 3.77528 3.90601 4.02491 4.20505 4.39217 4.48132 4.59415 4.67928 4.71554 4.78645 4.84546 4.88005 4.94256 5.05743 5.15300 5.19615 5.27036 5.34576 5.43429 5.47907 5.51320 5.61425 5.71388 5.76502 5.92927 6.12064 6.47926 6.59599 6.60630 6.86336 7.82101 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.005536 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.512220 B = 5056.515368 C = 6063.659087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 H 0.063 0.937 4 C -0.153 4.153 5 C 0.394 3.606 6 O -0.523 6.523 7 C -0.277 4.277 8 C 0.061 3.939 9 C -0.018 4.018 10 C -0.223 4.223 11 C -0.012 4.012 12 C -0.205 4.205 13 C 0.301 3.699 14 N -0.526 5.526 15 C 0.112 3.888 16 C -0.515 4.515 17 H 0.066 0.934 18 C 0.013 3.987 19 N -0.779 5.779 20 Si 1.107 2.893 21 H -0.259 1.259 22 H -0.262 1.262 23 H -0.270 1.270 24 C -0.206 4.206 25 C -0.092 4.092 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.296 0.704 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.953 -4.044 7.627 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.190 4.190 5 C 0.280 3.720 6 O -0.406 6.406 7 C -0.296 4.296 8 C 0.060 3.940 9 C -0.019 4.019 10 C -0.242 4.242 11 C -0.033 4.033 12 C -0.211 4.211 13 C -0.007 4.007 14 N -0.206 5.206 15 C 0.106 3.894 16 C -0.542 4.542 17 H 0.084 0.916 18 C -0.209 4.209 19 N -0.400 5.400 20 Si 0.924 3.076 21 H -0.183 1.183 22 H -0.187 1.187 23 H -0.194 1.194 24 C -0.225 4.225 25 C -0.129 4.129 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.465 -2.598 7.177 12.953 hybrid contribution 0.179 -1.317 -0.551 1.439 sum -10.286 -3.915 6.626 12.847 Atomic orbital electron populations 1.21773 0.91598 1.03495 1.02831 1.21134 0.98153 0.98946 0.91905 0.91824 1.22204 0.91122 1.04925 1.00776 1.21453 0.93273 0.69772 0.87541 1.90543 1.71266 1.40549 1.38206 1.22093 1.00766 1.12667 0.94062 1.21679 0.96921 0.84297 0.91133 1.18965 0.94895 0.94519 0.93509 1.20539 1.08100 0.99835 0.95762 1.20792 0.91680 0.94993 0.95800 1.17187 1.09900 1.02864 0.91134 1.26017 0.91505 0.90768 0.92446 1.81013 1.13670 1.11804 1.14076 1.18587 0.89844 0.91024 0.89909 1.20883 1.11779 0.95735 1.25831 0.91553 1.28323 1.02429 1.00205 0.89923 1.70471 1.01023 1.38933 1.29525 0.83092 0.71720 0.73851 0.78922 1.18346 1.18656 1.19441 1.21159 1.03783 1.00434 0.97105 1.20993 0.87765 1.04120 0.99982 0.91525 0.91785 0.90585 0.85518 0.87995 0.87898 0.83858 0.84813 0.89117 0.88140 0.88894 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.21 71.99 0.66 -0.98 16 2 C -0.08 -1.46 2.76 -10.79 -0.03 -1.49 16 3 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.15 -2.90 5.38 29.91 0.16 -2.74 16 5 C 0.39 11.65 6.82 26.32 0.18 11.83 16 6 O -0.52 -19.47 17.82 -3.50 -0.06 -19.53 16 7 C -0.28 -8.83 9.25 22.12 0.20 -8.63 16 8 C 0.06 1.74 5.25 -18.39 -0.10 1.65 16 9 C -0.02 -0.63 5.23 -20.24 -0.11 -0.73 16 10 C -0.22 -7.12 9.67 22.62 0.22 -6.90 16 11 C -0.01 -0.43 9.73 22.45 0.22 -0.21 16 12 C -0.20 -8.95 5.95 -19.54 -0.12 -9.07 16 13 C 0.30 13.93 14.28 88.33 1.26 15.19 16 14 N -0.53 -25.17 18.54 19.01 0.35 -24.82 16 15 C 0.11 5.28 5.45 -19.92 -0.11 5.17 16 16 C -0.52 -25.74 8.49 23.40 0.20 -25.54 16 17 H 0.07 3.47 7.44 -2.91 -0.02 3.44 16 18 C 0.01 0.60 4.95 85.36 0.42 1.02 16 19 N -0.78 -37.15 12.32 21.88 0.27 -36.88 16 20 Si 1.11 40.88 30.00 68.60 2.06 42.94 16 21 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 22 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 23 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 24 C -0.21 -8.89 7.58 23.06 0.17 -8.72 16 25 C -0.09 -1.82 5.12 29.73 0.15 -1.66 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.10 3.80 8.04 -2.91 -0.02 3.78 16 32 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.30 14.24 6.69 -92.71 -0.62 13.62 16 35 H 0.10 4.67 6.52 -2.91 -0.02 4.65 16 36 H 0.09 1.87 8.10 -2.39 -0.02 1.85 16 37 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -60.06 325.03 7.25 -52.81 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.23 Total: 17.29 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 3.40 Total: -31.81 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 0.62 Total: -61.70 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.06 Total: -19.53 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.06 Total: 42.94 kcal Total: -60.06 7.25 -52.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242741520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.339 kcal (2) G-P(sol) polarization free energy of solvation -60.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds