Wall clock time and date at job start Tue Mar 31 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.66342 * 2 1 4 4 C 1.53197 * 109.57038 * 239.69589 * 2 1 3 5 5 C 1.50711 * 109.05647 * 183.33646 * 4 2 1 6 6 O 1.21421 * 119.75543 * 208.78130 * 5 4 2 7 7 C 1.40814 * 120.48050 * 28.75888 * 5 4 2 8 8 C 1.34835 * 121.58862 * 0.25186 * 7 5 4 9 9 C 1.47060 * 119.40757 * 180.25364 * 8 7 5 10 10 C 1.40303 * 119.60279 * 244.98066 * 9 8 7 11 11 C 1.37594 * 121.11965 * 179.69171 * 10 9 8 12 12 C 1.39615 * 120.25854 * 0.61442 * 11 10 9 13 13 C 1.43198 * 120.40078 * 179.69001 * 12 11 10 14 14 N 9.02729 * 127.15637 * 97.84581 * 2 1 3 15 15 C 1.46529 * 119.20148 * 359.41968 * 12 11 10 16 16 C 1.40841 * 120.52866 * 180.29746 * 15 12 11 17 17 H 1.07999 * 120.00183 * 24.50358 * 16 15 12 18 18 C 1.40254 * 120.00302 * 204.50624 * 16 15 12 19 19 N 1.30653 * 120.00043 * 17.42875 * 18 16 15 20 20 Si 1.86804 * 120.00249 * 197.43715 * 18 16 15 21 21 H 1.48493 * 109.47163 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47121 * 119.99758 * 20 18 16 23 23 H 1.48499 * 109.47126 * 239.99705 * 20 18 16 24 24 C 1.39151 * 119.59903 * 65.00542 * 9 8 7 25 25 C 1.50526 * 121.18565 * 0.53341 * 8 7 5 26 26 H 1.08998 * 109.46890 * 180.30480 * 1 2 3 27 27 H 1.09003 * 109.47140 * 300.29747 * 1 2 3 28 28 H 1.08996 * 109.47333 * 60.30550 * 1 2 3 29 29 H 1.09006 * 109.53819 * 63.46818 * 4 2 1 30 30 H 1.08997 * 109.54084 * 303.21593 * 4 2 1 31 31 H 1.08000 * 119.20812 * 180.27143 * 7 5 4 32 32 H 1.08006 * 119.43776 * 359.97438 * 10 9 8 33 33 H 1.08003 * 119.87158 * 180.33162 * 11 10 9 34 34 H 0.96992 * 120.00605 * 184.51419 * 19 18 16 35 35 H 1.08005 * 120.16177 * 0.02562 * 24 9 8 36 36 H 1.09002 * 109.46621 * 89.90789 * 25 8 7 37 37 H 1.09004 * 109.46541 * 209.88459 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0265 0.0000 4 6 2.0432 -0.7284 -1.2462 5 6 3.5480 -0.7935 -1.1934 6 8 4.1862 -0.8281 -2.2258 7 6 4.2190 -0.8141 0.0444 8 6 3.5469 -0.7818 1.2128 9 6 4.2965 -0.7997 2.4778 10 6 4.1668 -1.8951 3.3449 11 6 4.8584 -1.9472 4.5333 12 6 5.6983 -0.8958 4.9051 13 6 6.4144 -0.9439 6.1443 14 7 6.9824 -0.9821 7.1273 15 6 5.8429 0.2547 4.0094 16 6 6.6876 1.3278 4.3538 17 1 7.5111 1.1699 5.0344 18 6 6.4592 2.6016 3.8130 19 7 5.3019 2.8861 3.2776 20 14 7.8098 3.8914 3.8580 21 1 9.0151 3.3232 4.5133 22 1 8.1472 4.3033 2.4718 23 1 7.3405 5.0730 4.6252 24 6 5.1256 0.2702 2.8007 25 6 2.0427 -0.7340 1.2457 26 1 -0.3633 -1.0276 0.0055 27 1 -0.3633 0.5185 0.8873 28 1 -0.3634 0.5091 -0.8927 29 1 1.7329 -0.1857 -2.1393 30 1 1.6351 -1.7387 -1.2719 31 1 5.2981 -0.8566 0.0582 32 1 3.5165 -2.7134 3.0728 33 1 4.7475 -2.8028 5.1831 34 1 5.1650 3.7436 2.8455 35 1 5.2172 1.1086 2.1260 36 1 1.6472 -1.7496 1.2617 37 1 1.7156 -0.2028 2.1396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242741521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:10 Heat of formation + Delta-G solvation = -12.476476 kcal Electronic energy + Delta-G solvation = -20712.850761 eV Core-core repulsion = 17611.544267 eV Total energy + Delta-G solvation = -3101.306494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.11535 -39.56530 -37.94986 -36.93471 -35.88666 -34.18182 -31.78803 -31.12162 -29.56248 -27.77554 -27.42547 -24.90545 -22.99844 -22.06224 -21.71278 -19.53792 -19.07833 -18.48487 -17.40220 -16.85975 -16.44390 -16.10266 -15.76851 -15.47028 -15.22186 -15.05727 -14.57890 -14.49715 -14.13512 -13.84889 -13.54116 -13.51478 -13.42030 -13.19291 -12.97378 -12.86571 -12.80218 -12.65568 -12.42523 -12.09077 -11.95470 -11.64916 -11.54993 -11.44213 -11.19118 -10.51500 -10.17366 -9.55413 -9.23699 -8.87076 -6.56681 -0.23592 0.38655 0.96675 1.33809 1.45083 1.47166 2.00809 2.02744 2.10440 2.30159 2.63498 3.36913 3.52722 3.59109 3.66084 3.86589 3.96483 4.09138 4.37452 4.45420 4.52876 4.70625 4.73495 4.75399 4.85606 4.93311 4.94791 5.04751 5.12268 5.19606 5.22778 5.27241 5.38561 5.43249 5.53490 5.58618 5.73229 5.89495 5.95915 6.10569 6.38349 6.61931 6.66135 6.72866 6.95368 8.03612 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.005496 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.582525 B = 5093.272460 C = 6111.188441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 H 0.064 0.936 4 C -0.154 4.154 5 C 0.395 3.605 6 O -0.526 6.526 7 C -0.282 4.282 8 C 0.069 3.931 9 C -0.041 4.041 10 C -0.217 4.217 11 C -0.024 4.024 12 C -0.205 4.205 13 C 0.304 3.696 14 N -0.530 5.530 15 C 0.128 3.872 16 C -0.464 4.464 17 H 0.068 0.932 18 C 0.047 3.953 19 N -0.782 5.782 20 Si 0.970 3.030 21 H -0.267 1.267 22 H -0.254 1.254 23 H -0.260 1.260 24 C -0.156 4.156 25 C -0.093 4.093 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.300 0.700 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.996 -2.874 -8.006 14.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 H 0.083 0.917 4 C -0.191 4.191 5 C 0.281 3.719 6 O -0.409 6.409 7 C -0.301 4.301 8 C 0.068 3.932 9 C -0.042 4.042 10 C -0.236 4.236 11 C -0.045 4.045 12 C -0.211 4.211 13 C -0.005 4.005 14 N -0.210 5.210 15 C 0.123 3.877 16 C -0.491 4.491 17 H 0.086 0.914 18 C -0.174 4.174 19 N -0.405 5.405 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.178 1.178 23 H -0.185 1.185 24 C -0.175 4.175 25 C -0.129 4.129 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.981 -2.732 -7.053 13.334 hybrid contribution 1.097 0.860 -0.005 1.394 sum -9.884 -1.871 -7.058 12.289 Atomic orbital electron populations 1.21774 0.91753 1.03431 1.02755 1.21236 0.98027 0.98897 0.91872 0.91705 1.22210 0.91292 1.04833 1.00732 1.21432 0.93188 0.69715 0.87594 1.90533 1.71267 1.40830 1.38241 1.22053 1.00752 1.13339 0.93940 1.21663 0.96767 0.83532 0.91257 1.19032 0.96313 0.95037 0.93832 1.20522 1.07521 0.99706 0.95836 1.20706 0.92559 0.95222 0.95987 1.17258 1.09934 1.02753 0.91196 1.26040 0.91383 0.90612 0.92432 1.81005 1.13889 1.11985 1.14127 1.18596 0.89551 0.89958 0.89612 1.19875 1.11465 0.93774 1.24023 0.91381 1.26665 0.97687 1.00842 0.92180 1.69680 1.22146 1.24754 1.23913 0.85305 0.78375 0.77365 0.79889 1.19100 1.17799 1.18481 1.21358 1.00551 0.98693 0.96892 1.21100 0.88046 1.03842 0.99910 0.90663 0.91857 0.91538 0.88087 0.85637 0.87851 0.84249 0.85154 0.88795 0.86761 0.85979 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.21 71.98 0.66 -1.06 16 2 C -0.08 -1.48 2.79 -10.59 -0.03 -1.51 16 3 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.15 -2.98 5.37 29.92 0.16 -2.82 16 5 C 0.39 11.80 6.82 26.32 0.18 11.98 16 6 O -0.53 -19.68 17.82 -3.47 -0.06 -19.74 16 7 C -0.28 -9.10 9.25 22.12 0.20 -8.90 16 8 C 0.07 2.04 5.24 -18.38 -0.10 1.94 16 9 C -0.04 -1.49 5.23 -20.24 -0.11 -1.60 16 10 C -0.22 -7.16 9.67 22.62 0.22 -6.95 16 11 C -0.02 -0.88 9.73 22.45 0.22 -0.67 16 12 C -0.21 -9.11 5.95 -19.54 -0.12 -9.22 16 13 C 0.30 14.15 14.27 88.33 1.26 15.41 16 14 N -0.53 -25.50 18.54 19.00 0.35 -25.15 16 15 C 0.13 6.14 5.73 -19.91 -0.11 6.03 16 16 C -0.46 -23.14 8.57 23.40 0.20 -22.94 16 17 H 0.07 3.53 7.37 -2.91 -0.02 3.51 16 18 C 0.05 2.15 5.16 85.36 0.44 2.60 16 19 N -0.78 -35.46 10.94 21.88 0.24 -35.22 16 20 Si 0.97 35.67 29.60 68.60 2.03 37.70 16 21 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 23 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 24 C -0.16 -6.88 8.33 23.06 0.19 -6.69 16 25 C -0.09 -1.92 5.14 29.93 0.15 -1.76 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 3.84 8.04 -2.91 -0.02 3.81 16 32 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 33 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.30 12.12 8.30 -92.71 -0.77 11.35 16 35 H 0.11 5.36 6.17 -2.91 -0.02 5.34 16 36 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.96 8.10 -2.39 -0.02 1.94 16 Total: -1.00 -59.35 325.76 7.08 -52.27 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.09 Total: 16.29 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 3.43 Total: -26.15 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.59 Total: -60.37 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.06 Total: -19.74 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -59.35 7.08 -52.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242741521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.798 kcal (2) G-P(sol) polarization free energy of solvation -59.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds