Wall clock time and date at job start Tue Mar 31 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.65957 * 2 1 4 4 C 1.53187 * 109.56584 * 239.70627 * 2 1 3 5 5 C 1.50696 * 109.08390 * 183.24011 * 4 2 1 6 6 O 1.21453 * 119.75149 * 208.83236 * 5 4 2 7 7 C 1.40640 * 120.50292 * 28.81493 * 5 4 2 8 8 C 1.35283 * 121.55404 * 0.21252 * 7 5 4 9 9 C 1.46544 * 119.43469 * 180.24067 * 8 7 5 10 10 C 1.40526 * 119.55951 * 244.72379 * 9 8 7 11 11 C 1.35840 * 121.12399 * 180.27764 * 10 9 8 12 12 C 1.41154 * 120.16523 * 359.97438 * 11 10 9 13 13 C 1.40261 * 120.43246 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99731 * 154.90064 * 13 12 11 15 15 C 1.40576 * 120.00276 * 334.90557 * 13 12 11 16 16 N 1.30467 * 119.99845 * 342.59646 * 15 13 12 17 17 Si 1.86793 * 119.99935 * 162.60514 * 15 13 12 18 18 H 1.48505 * 109.47594 * 94.66601 * 17 15 13 19 19 H 1.48498 * 109.47028 * 214.66493 * 17 15 13 20 20 H 1.48500 * 109.47313 * 334.66457 * 17 15 13 21 21 C 1.46731 * 119.13381 * 0.02562 * 12 11 10 22 22 C 1.43198 * 120.53768 * 180.02562 * 21 12 11 23 23 N 7.77202 * 138.74476 * 64.23385 * 2 1 3 24 24 C 1.38834 * 118.93102 * 359.97438 * 21 12 11 25 25 C 1.50535 * 121.13189 * 0.51570 * 8 7 5 26 26 H 1.08999 * 109.47374 * 180.29271 * 1 2 3 27 27 H 1.09001 * 109.46836 * 300.30096 * 1 2 3 28 28 H 1.09001 * 109.46940 * 60.28883 * 1 2 3 29 29 H 1.08998 * 109.53430 * 63.35680 * 4 2 1 30 30 H 1.09004 * 109.53032 * 303.12349 * 4 2 1 31 31 H 1.07998 * 119.22072 * 180.23115 * 7 5 4 32 32 H 1.07994 * 119.43691 * 0.25763 * 10 9 8 33 33 H 1.08006 * 119.91408 * 180.02562 * 11 10 9 34 34 H 0.96995 * 119.99829 * 180.02562 * 16 15 13 35 35 H 1.08005 * 120.12235 * 180.02562 * 24 21 12 36 36 H 1.08999 * 109.46922 * 89.96847 * 25 8 7 37 37 H 1.08995 * 109.46836 * 209.95482 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0265 0.0000 4 6 2.0431 -0.7281 -1.2463 5 6 3.5478 -0.7916 -1.1954 6 8 4.1849 -0.8249 -2.2289 7 6 4.2201 -0.8122 0.0397 8 6 3.5469 -0.7805 1.2127 9 6 4.2947 -0.7986 2.4729 10 6 4.1607 -1.8940 3.3428 11 6 4.8345 -1.9412 4.5214 12 6 5.6881 -0.8804 4.8934 13 6 6.3861 -0.9230 6.1092 14 1 7.3048 -0.3669 6.2243 15 6 5.8900 -1.6897 7.1780 16 7 4.6451 -2.0801 7.1782 17 14 7.0131 -2.1492 8.5981 18 1 6.8582 -1.1577 9.6928 19 1 6.6510 -3.4996 9.0986 20 1 8.4231 -2.1557 8.1320 21 6 5.8349 0.2681 3.9920 22 6 6.6932 1.3605 4.3392 23 7 7.3729 2.2278 4.6154 24 6 5.1289 0.2781 2.7966 25 6 2.0427 -0.7330 1.2458 26 1 -0.3634 -1.0276 0.0052 27 1 -0.3633 0.5185 0.8873 28 1 -0.3633 0.5093 -0.8926 29 1 1.7311 -0.1864 -2.1392 30 1 1.6361 -1.7390 -1.2711 31 1 5.2992 -0.8541 0.0520 32 1 3.5108 -2.7122 3.0699 33 1 4.7173 -2.7930 5.1751 34 1 4.3027 -2.6087 7.9158 35 1 5.2230 1.1136 2.1186 36 1 1.6474 -1.7487 1.2625 37 1 1.7155 -0.2013 2.1392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242741743.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:20 Heat of formation + Delta-G solvation = -3.137823 kcal Electronic energy + Delta-G solvation = -20453.022988 eV Core-core repulsion = 17352.121448 eV Total energy + Delta-G solvation = -3100.901540 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.84452 -38.01762 -36.66992 -35.21881 -34.51824 -32.63379 -30.20538 -29.84232 -28.67518 -26.74825 -25.88977 -22.40756 -22.38039 -20.99102 -20.40284 -17.97708 -17.81811 -16.85307 -15.74273 -15.50269 -15.23152 -14.89976 -14.43424 -14.21246 -14.08413 -13.41958 -13.16328 -12.97583 -12.78085 -12.54601 -12.26756 -12.14818 -12.02585 -11.94367 -11.76085 -11.57135 -11.42219 -11.34727 -10.96350 -10.81183 -10.63211 -10.62619 -10.12722 -9.99697 -9.67762 -9.24164 -8.74650 -7.93157 -7.69182 -7.34420 -4.89218 1.17537 2.08559 2.46197 2.81498 2.83756 2.91081 3.32379 3.55497 3.82047 3.98828 4.31492 4.50271 4.65177 4.82722 4.94349 5.21413 5.28938 5.40037 5.47094 5.48641 5.58335 5.59722 5.70845 5.77408 5.84921 6.01343 6.03875 6.09159 6.24298 6.49096 6.49153 6.55741 6.68502 6.79504 6.92070 7.06787 7.34856 7.50059 7.60984 7.69788 7.93856 8.05223 8.23099 8.39308 8.72310 9.52801 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022237 B = 0.004163 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.879075 B = 6723.752030 C = 7254.695153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.078 0.922 4 C -0.164 4.164 5 C 0.393 3.607 6 O -0.491 6.491 7 C -0.289 4.289 8 C 0.088 3.912 9 C -0.239 4.239 10 C -0.050 4.050 11 C -0.166 4.166 12 C 0.155 3.845 13 C -0.415 4.415 14 H 0.089 0.911 15 C 0.075 3.925 16 N -0.749 5.749 17 Si 0.916 3.084 18 H -0.263 1.263 19 H -0.268 1.268 20 H -0.253 1.253 21 C -0.189 4.189 22 C 0.299 3.701 23 N -0.506 5.506 24 C 0.007 3.993 25 C -0.100 4.100 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.294 0.706 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.002 -3.070 -4.907 10.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.202 4.202 5 C 0.277 3.723 6 O -0.372 6.372 7 C -0.308 4.308 8 C 0.087 3.913 9 C -0.241 4.241 10 C -0.069 4.069 11 C -0.185 4.185 12 C 0.149 3.851 13 C -0.441 4.441 14 H 0.107 0.893 15 C -0.150 4.150 16 N -0.370 5.370 17 Si 0.739 3.261 18 H -0.188 1.188 19 H -0.192 1.192 20 H -0.177 1.177 21 C -0.195 4.195 22 C -0.011 4.011 23 N -0.184 5.184 24 C -0.013 4.013 25 C -0.137 4.137 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.114 0.886 33 H 0.144 0.856 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.824 -1.866 -4.851 9.393 hybrid contribution 0.088 -0.586 0.725 0.936 sum -7.737 -2.452 -4.126 9.104 Atomic orbital electron populations 1.21819 0.94411 1.02095 1.02006 1.21256 0.96035 0.99922 0.93290 0.90380 1.22204 0.95453 1.02835 0.99703 1.20900 0.90880 0.71452 0.89082 1.90545 1.70019 1.39344 1.37321 1.22149 1.01507 1.14467 0.92666 1.21279 0.93980 0.83147 0.92938 1.17850 1.09157 0.99943 0.97148 1.20403 0.97541 0.95610 0.93321 1.20871 1.01810 0.99552 0.96266 1.18491 0.88620 0.87665 0.90284 1.19913 1.07115 1.21567 0.95519 0.89273 1.26230 0.95248 0.92965 1.00574 1.69623 1.13729 1.22914 1.30753 0.86114 0.81393 0.79013 0.79610 1.18803 1.19228 1.17673 1.16684 1.08541 0.93329 1.00980 1.25740 0.91822 0.92048 0.91501 1.81038 1.13617 1.12934 1.10854 1.20562 0.91756 0.95619 0.93411 1.21041 0.92147 1.01745 0.98734 0.92414 0.92112 0.92554 0.89468 0.88637 0.85464 0.88623 0.85592 0.89428 0.88052 0.89393 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.21 37.16 0.34 -0.86 16 2 C -0.09 -0.90 2.79 -90.33 -0.25 -1.15 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 4 C -0.16 -1.87 5.37 -27.79 -0.15 -2.01 16 5 C 0.39 6.04 6.81 -33.40 -0.23 5.82 16 6 O -0.49 -9.21 17.82 5.41 0.10 -9.12 16 7 C -0.29 -4.60 9.26 -39.73 -0.37 -4.97 16 8 C 0.09 1.33 5.23 -102.41 -0.54 0.79 16 9 C -0.24 -4.32 5.25 -105.03 -0.55 -4.87 16 10 C -0.05 -0.92 9.60 -39.58 -0.38 -1.30 16 11 C -0.17 -3.50 8.62 -39.34 -0.34 -3.84 16 12 C 0.16 3.53 5.73 -104.60 -0.60 2.93 16 13 C -0.41 -9.56 8.56 -37.94 -0.32 -9.89 16 14 H 0.09 2.09 7.38 -52.48 -0.39 1.71 16 15 C 0.08 1.59 5.15 -17.25 -0.09 1.50 16 16 N -0.75 -15.89 10.96 55.58 0.61 -15.28 16 17 Si 0.92 16.08 29.60 -169.99 -5.03 11.05 16 18 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 19 H -0.27 -4.49 7.11 56.52 0.40 -4.09 16 20 H -0.25 -4.54 7.11 56.52 0.40 -4.14 16 21 C -0.19 -4.15 5.93 -104.32 -0.62 -4.77 16 22 C 0.30 6.81 14.28 -22.47 -0.32 6.49 16 23 N -0.51 -11.92 18.54 41.84 0.78 -11.14 16 24 C 0.01 0.15 9.38 -38.70 -0.36 -0.22 16 25 C -0.10 -1.19 5.13 -27.77 -0.14 -1.34 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.13 2.20 8.04 -52.49 -0.42 1.78 16 32 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.13 2.70 6.19 -52.48 -0.32 2.37 16 34 H 0.29 5.54 8.29 -40.82 -0.34 5.20 16 35 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -25.42 325.64 -8.05 -33.47 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.49 Total: 3.80 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -4.92 Total: -17.70 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 1.38 Total: -26.42 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.10 Total: -9.12 kcal Atomic # 14 Polarization: 16.08 SS G_CDS: -5.03 Total: 11.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -25.42 -8.05 -33.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242741743.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.334 kcal (2) G-P(sol) polarization free energy of solvation -25.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds