Wall clock time and date at job start Tue Mar 31 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.65957 * 2 1 4 4 C 1.53187 * 109.56584 * 239.70627 * 2 1 3 5 5 C 1.50696 * 109.08390 * 183.24011 * 4 2 1 6 6 O 1.21453 * 119.75149 * 208.83236 * 5 4 2 7 7 C 1.40640 * 120.50292 * 28.81493 * 5 4 2 8 8 C 1.35283 * 121.55404 * 0.21252 * 7 5 4 9 9 C 1.46544 * 119.43469 * 180.24067 * 8 7 5 10 10 C 1.40526 * 119.55951 * 244.72379 * 9 8 7 11 11 C 1.35840 * 121.12399 * 180.27764 * 10 9 8 12 12 C 1.41154 * 120.16523 * 359.97438 * 11 10 9 13 13 C 1.40261 * 120.43246 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99731 * 154.90064 * 13 12 11 15 15 C 1.40576 * 120.00276 * 334.90557 * 13 12 11 16 16 N 1.30467 * 119.99845 * 342.59646 * 15 13 12 17 17 Si 1.86793 * 119.99935 * 162.60514 * 15 13 12 18 18 H 1.48505 * 109.47594 * 94.66601 * 17 15 13 19 19 H 1.48498 * 109.47028 * 214.66493 * 17 15 13 20 20 H 1.48500 * 109.47313 * 334.66457 * 17 15 13 21 21 C 1.46731 * 119.13381 * 0.02562 * 12 11 10 22 22 C 1.43198 * 120.53768 * 180.02562 * 21 12 11 23 23 N 7.77202 * 138.74476 * 64.23385 * 2 1 3 24 24 C 1.38834 * 118.93102 * 359.97438 * 21 12 11 25 25 C 1.50535 * 121.13189 * 0.51570 * 8 7 5 26 26 H 1.08999 * 109.47374 * 180.29271 * 1 2 3 27 27 H 1.09001 * 109.46836 * 300.30096 * 1 2 3 28 28 H 1.09001 * 109.46940 * 60.28883 * 1 2 3 29 29 H 1.08998 * 109.53430 * 63.35680 * 4 2 1 30 30 H 1.09004 * 109.53032 * 303.12349 * 4 2 1 31 31 H 1.07998 * 119.22072 * 180.23115 * 7 5 4 32 32 H 1.07994 * 119.43691 * 0.25763 * 10 9 8 33 33 H 1.08006 * 119.91408 * 180.02562 * 11 10 9 34 34 H 0.96995 * 119.99829 * 180.02562 * 16 15 13 35 35 H 1.08005 * 120.12235 * 180.02562 * 24 21 12 36 36 H 1.08999 * 109.46922 * 89.96847 * 25 8 7 37 37 H 1.08995 * 109.46836 * 209.95482 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0265 0.0000 4 6 2.0431 -0.7281 -1.2463 5 6 3.5478 -0.7916 -1.1954 6 8 4.1849 -0.8249 -2.2289 7 6 4.2201 -0.8122 0.0397 8 6 3.5469 -0.7805 1.2127 9 6 4.2947 -0.7986 2.4729 10 6 4.1607 -1.8940 3.3428 11 6 4.8345 -1.9412 4.5214 12 6 5.6881 -0.8804 4.8934 13 6 6.3861 -0.9230 6.1092 14 1 7.3048 -0.3669 6.2243 15 6 5.8900 -1.6897 7.1780 16 7 4.6451 -2.0801 7.1782 17 14 7.0131 -2.1492 8.5981 18 1 6.8582 -1.1577 9.6928 19 1 6.6510 -3.4996 9.0986 20 1 8.4231 -2.1557 8.1320 21 6 5.8349 0.2681 3.9920 22 6 6.6932 1.3605 4.3392 23 7 7.3729 2.2278 4.6154 24 6 5.1289 0.2781 2.7966 25 6 2.0427 -0.7330 1.2458 26 1 -0.3634 -1.0276 0.0052 27 1 -0.3633 0.5185 0.8873 28 1 -0.3633 0.5093 -0.8926 29 1 1.7311 -0.1864 -2.1392 30 1 1.6361 -1.7390 -1.2711 31 1 5.2992 -0.8541 0.0520 32 1 3.5108 -2.7122 3.0699 33 1 4.7173 -2.7930 5.1751 34 1 4.3027 -2.6087 7.9158 35 1 5.2230 1.1136 2.1186 36 1 1.6474 -1.7487 1.2625 37 1 1.7155 -0.2013 2.1392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242741743.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:19 Heat of formation + Delta-G solvation = -13.001475 kcal Electronic energy + Delta-G solvation = -20453.450708 eV Core-core repulsion = 17352.121448 eV Total energy + Delta-G solvation = -3101.329260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04356 -39.57768 -37.90996 -36.97488 -36.00232 -33.90998 -31.79335 -31.31969 -29.83748 -27.62592 -27.39512 -24.00883 -23.81440 -22.10040 -21.66339 -19.55951 -19.15042 -18.20546 -17.27559 -16.80645 -16.40161 -16.04400 -15.94909 -15.68731 -15.24784 -14.89737 -14.57764 -14.45810 -14.09949 -13.79530 -13.57312 -13.51716 -13.44117 -13.23896 -13.02515 -12.86414 -12.80197 -12.69245 -12.31044 -12.06174 -11.81075 -11.66768 -11.58176 -11.43516 -11.20958 -10.46577 -10.06331 -9.55990 -9.29578 -8.92369 -6.58147 -0.09337 0.42566 0.90633 1.36399 1.44379 1.50634 1.99224 2.08954 2.11428 2.35350 2.60220 3.42909 3.50841 3.59614 3.76285 3.93151 3.99711 4.21628 4.27237 4.50043 4.55907 4.58492 4.76017 4.77359 4.88009 4.89461 4.98465 5.03304 5.18387 5.20177 5.28799 5.33924 5.38458 5.43918 5.54275 5.60887 5.81436 5.86703 6.00146 6.06581 6.40148 6.56766 6.73190 6.74388 6.93005 7.98634 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022237 B = 0.004163 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.879075 B = 6723.752030 C = 7254.695153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.070 0.930 4 C -0.155 4.155 5 C 0.393 3.607 6 O -0.533 6.533 7 C -0.299 4.299 8 C 0.098 3.902 9 C -0.226 4.226 10 C -0.041 4.041 11 C -0.180 4.180 12 C 0.136 3.864 13 C -0.451 4.451 14 H 0.071 0.929 15 C 0.048 3.952 16 N -0.767 5.767 17 Si 0.976 3.024 18 H -0.264 1.264 19 H -0.249 1.249 20 H -0.264 1.264 21 C -0.212 4.212 22 C 0.303 3.697 23 N -0.530 5.530 24 C 0.002 3.998 25 C -0.099 4.099 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.306 0.694 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.604 -4.200 -5.403 13.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 H 0.089 0.911 4 C -0.193 4.193 5 C 0.280 3.720 6 O -0.417 6.417 7 C -0.318 4.318 8 C 0.097 3.903 9 C -0.227 4.227 10 C -0.060 4.060 11 C -0.199 4.199 12 C 0.130 3.870 13 C -0.477 4.477 14 H 0.089 0.911 15 C -0.175 4.175 16 N -0.389 5.389 17 Si 0.795 3.205 18 H -0.189 1.189 19 H -0.172 1.172 20 H -0.188 1.188 21 C -0.219 4.219 22 C -0.005 4.005 23 N -0.210 5.210 24 C -0.019 4.019 25 C -0.135 4.135 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.138 0.862 31 H 0.122 0.878 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.451 -2.995 -5.350 12.117 hybrid contribution 0.846 -0.243 0.766 1.167 sum -9.605 -3.238 -4.584 11.125 Atomic orbital electron populations 1.21786 0.92108 1.03222 1.02750 1.21226 0.97763 0.99069 0.91813 0.91128 1.22199 0.91725 1.04569 1.00758 1.21382 0.93005 0.69755 0.87851 1.90537 1.71340 1.41451 1.38340 1.22113 1.00696 1.15228 0.93739 1.21368 0.95890 0.82085 0.90919 1.18161 1.07871 0.98885 0.97829 1.20709 0.96761 0.96333 0.92190 1.20883 1.02518 0.99102 0.97385 1.18769 0.89322 0.88343 0.90566 1.19974 1.07308 1.23526 0.96925 0.91124 1.26785 0.96341 0.92459 1.01947 1.69593 1.14366 1.23045 1.31887 0.85257 0.79005 0.79460 0.76731 1.18866 1.17205 1.18803 1.16886 1.09565 0.93238 1.02165 1.26018 0.91590 0.91975 0.90955 1.81007 1.14524 1.13800 1.11642 1.20753 0.91634 0.96656 0.92838 1.21148 0.89074 1.03489 0.99782 0.91104 0.91734 0.91573 0.88279 0.86246 0.87781 0.85434 0.86070 0.88217 0.86931 0.86902 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.21 71.98 0.66 -1.02 16 2 C -0.08 -1.36 2.79 -10.61 -0.03 -1.39 16 3 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.16 -2.97 5.37 29.91 0.16 -2.81 16 5 C 0.39 11.46 6.81 26.27 0.18 11.64 16 6 O -0.53 -19.71 17.82 -3.57 -0.06 -19.78 16 7 C -0.30 -9.16 9.26 22.17 0.21 -8.96 16 8 C 0.10 2.75 5.23 -18.43 -0.10 2.65 16 9 C -0.23 -7.83 5.25 -20.13 -0.11 -7.93 16 10 C -0.04 -1.46 9.60 22.27 0.21 -1.24 16 11 C -0.18 -7.56 8.62 22.43 0.19 -7.37 16 12 C 0.14 6.32 5.73 -19.85 -0.11 6.20 16 13 C -0.45 -21.54 8.56 23.33 0.20 -21.34 16 14 H 0.07 3.51 7.38 -2.91 -0.02 3.49 16 15 C 0.05 2.06 5.15 85.47 0.44 2.50 16 16 N -0.77 -32.39 10.96 21.93 0.24 -32.15 16 17 Si 0.98 33.01 29.60 68.60 2.03 35.04 16 18 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 19 H -0.25 -7.59 7.11 99.48 0.71 -6.88 16 20 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 21 C -0.21 -9.53 5.93 -19.67 -0.12 -9.65 16 22 C 0.30 14.31 14.28 88.33 1.26 15.57 16 23 N -0.53 -25.80 18.54 19.00 0.35 -25.44 16 24 C 0.00 0.07 9.38 22.84 0.21 0.29 16 25 C -0.10 -1.96 5.13 29.92 0.15 -1.81 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.10 3.64 8.04 -2.91 -0.02 3.62 16 32 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.12 5.18 6.19 -2.91 -0.02 5.16 16 34 H 0.31 11.25 8.29 -92.71 -0.77 10.49 16 35 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 36 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.09 1.87 8.10 -2.39 -0.02 1.85 16 Total: -1.00 -56.72 325.64 7.07 -49.65 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 1.09 Total: 17.34 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 3.42 Total: -24.67 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.59 Total: -57.60 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.06 Total: -19.78 kcal Atomic # 14 Polarization: 33.01 SS G_CDS: 2.03 Total: 35.04 kcal Total: -56.72 7.07 -49.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242741743.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.649 kcal (2) G-P(sol) polarization free energy of solvation -56.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds