Wall clock time and date at job start Tue Mar 31 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47121 * 2 1 4 4 H 1.09000 * 109.46941 * 55.00458 * 3 2 1 5 5 F 1.39897 * 109.47355 * 295.00083 * 3 2 1 6 6 C 1.50703 * 109.47059 * 175.00107 * 3 2 1 7 7 O 1.21281 * 119.99766 * 45.00436 * 6 3 2 8 8 N 1.34776 * 120.00156 * 225.00127 * 6 3 2 9 9 C 1.46500 * 120.00273 * 179.97438 * 8 6 3 10 10 C 1.50688 * 109.47283 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93486 * 269.73018 * 10 9 8 12 12 C 1.38100 * 120.07527 * 179.72862 * 11 10 9 13 13 C 1.38883 * 119.92452 * 0.56372 * 12 11 10 14 14 O 1.35751 * 120.06885 * 179.68666 * 13 12 11 15 15 C 1.34830 * 117.00173 * 174.49020 * 14 13 12 16 16 H 1.08004 * 119.99847 * 5.05134 * 15 14 13 17 17 C 1.38658 * 120.00171 * 185.05949 * 15 14 13 18 18 N 1.31546 * 120.00047 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99774 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46902 * 90.00171 * 19 17 15 21 21 H 1.48491 * 109.47182 * 210.00238 * 19 17 15 22 22 H 1.48498 * 109.47126 * 330.00635 * 19 17 15 23 23 C 1.38875 * 119.86368 * 359.70845 * 13 12 11 24 24 C 1.38097 * 119.93409 * 359.97438 * 23 13 12 25 25 H 1.08992 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46933 * 300.00132 * 1 2 3 27 27 H 1.09001 * 109.46759 * 59.99611 * 1 2 3 28 28 H 1.09007 * 109.47185 * 240.00578 * 2 1 3 29 29 H 1.08993 * 109.47525 * 120.00606 * 2 1 3 30 30 H 0.96997 * 119.99459 * 0.02562 * 8 6 3 31 31 H 1.09005 * 109.47165 * 300.00664 * 9 8 6 32 32 H 1.09001 * 109.47081 * 59.99960 * 9 8 6 33 33 H 1.08008 * 119.96334 * 359.97065 * 11 10 9 34 34 H 1.07993 * 120.04026 * 180.26968 * 12 11 10 35 35 H 0.97001 * 120.00550 * 179.97438 * 18 17 15 36 36 H 1.08006 * 120.03798 * 179.97438 * 23 13 12 37 37 H 1.07998 * 119.97002 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 9 1.6699 2.0681 -1.1954 6 6 3.5419 1.4443 0.1238 7 8 4.2064 0.6811 -0.5447 8 7 4.1468 2.2940 0.9774 9 6 5.6068 2.2954 1.0982 10 6 6.0261 3.3298 2.1105 11 6 6.2947 4.6242 1.7040 12 6 6.6738 5.5759 2.6301 13 6 6.7965 5.2291 3.9693 14 8 7.1752 6.1608 4.8812 15 6 7.1643 5.7887 6.1771 16 1 6.9427 4.7657 6.4434 17 6 7.4377 6.7194 7.1679 18 7 7.4266 6.3565 8.4323 19 14 7.8215 8.4885 6.7073 20 1 6.5615 9.2733 6.6640 21 1 8.7362 9.0761 7.7187 22 1 8.4718 8.5226 5.3727 23 6 6.5316 3.9272 4.3736 24 6 6.1465 2.9817 3.4437 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.6153 2.9042 1.5123 31 1 5.9455 1.3112 1.4220 32 1 6.0511 2.5326 0.1315 33 1 6.2041 4.8919 0.6615 34 1 6.8792 6.5874 2.3126 35 1 7.6182 7.0074 9.1255 36 1 6.6265 3.6544 5.4143 37 1 5.9408 1.9690 3.7574 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337059335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:06 Heat of formation + Delta-G solvation = -100.305925 kcal Electronic energy + Delta-G solvation = -20810.981040 eV Core-core repulsion = 17275.096750 eV Total energy + Delta-G solvation = -3535.884290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.10010 -39.85235 -39.20616 -37.11601 -34.66615 -34.26471 -32.52822 -30.56015 -30.35263 -28.05152 -25.96808 -24.54799 -22.35911 -22.20741 -20.76284 -20.60295 -18.12405 -17.97061 -17.42479 -17.05855 -16.18187 -15.51982 -15.22312 -15.01907 -14.58431 -14.27992 -14.15382 -13.97923 -13.93005 -13.49411 -13.22985 -12.90258 -12.76696 -12.57852 -12.32422 -12.22208 -12.04333 -11.56086 -11.43107 -11.19897 -11.02811 -10.89302 -10.82264 -10.26412 -9.94647 -9.53546 -9.19380 -8.99346 -8.43953 -7.53962 -6.54150 -4.21266 1.86520 1.97089 2.27628 2.99169 3.14617 3.18178 3.32040 4.13199 4.14062 4.24680 4.33978 4.47672 4.57816 4.69603 4.97684 4.98323 5.07220 5.11025 5.26047 5.32129 5.49430 5.57917 5.65210 5.74929 5.75602 5.86505 5.97590 6.18438 6.26166 6.40166 6.61984 6.83629 7.06145 7.12564 7.31311 7.44500 7.65863 7.89643 7.94045 8.80261 9.40470 10.52914 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031083 B = 0.002931 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.597857 B = 9551.788594 C = 9728.288695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.082 3.918 4 H 0.100 0.900 5 F -0.191 7.191 6 C 0.488 3.512 7 O -0.528 6.528 8 N -0.712 5.712 9 C 0.175 3.825 10 C -0.210 4.210 11 C -0.055 4.055 12 C -0.195 4.195 13 C 0.167 3.833 14 O -0.211 6.211 15 C -0.393 4.393 16 H 0.108 0.892 17 C 0.065 3.935 18 N -0.874 5.874 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.224 4.224 24 C -0.052 4.052 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.405 0.595 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.281 0.719 36 H 0.135 0.865 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 -8.022 -12.869 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.042 3.958 4 H 0.118 0.882 5 F -0.172 7.172 6 C 0.271 3.729 7 O -0.404 6.404 8 N -0.364 5.364 9 C 0.054 3.946 10 C -0.211 4.211 11 C -0.074 4.074 12 C -0.214 4.214 13 C 0.114 3.886 14 O -0.115 6.115 15 C -0.468 4.468 16 H 0.125 0.875 17 C -0.139 4.139 18 N -0.511 5.511 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.183 1.183 23 C -0.243 4.243 24 C -0.070 4.070 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.240 0.760 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.092 0.908 36 H 0.153 0.847 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.702 -8.245 -13.143 18.299 hybrid contribution -0.043 1.062 0.392 1.132 sum -9.745 -7.183 -12.752 17.583 Atomic orbital electron populations 1.21779 0.94171 1.02618 1.02551 1.21985 0.97235 0.93603 1.05041 1.21661 0.92288 0.96252 0.85564 0.88198 1.92876 1.92071 1.83929 1.48330 1.20982 0.90247 0.81147 0.80539 1.90722 1.66145 1.39527 1.44034 1.46435 1.08859 1.38778 1.42305 1.20070 0.78569 0.98015 0.97990 1.19246 1.12938 0.94885 0.94034 1.20548 0.96820 0.91951 0.98086 1.20220 1.10256 1.00160 0.90774 1.19189 0.91318 0.88607 0.89475 1.83576 1.73968 1.37057 1.16948 1.20792 1.49686 0.98905 0.77403 0.87474 1.24491 0.95670 0.99943 0.93797 1.69633 1.46169 1.36283 0.99049 0.86172 0.78994 0.82506 0.79208 1.19766 1.20644 1.18295 1.21280 1.08797 0.93265 1.00999 1.20698 0.96164 0.98217 0.91958 0.91731 0.92248 0.91946 0.89493 0.89735 0.76041 0.91127 0.91182 0.86720 0.86297 0.90844 0.84738 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.83 37.16 0.37 -0.65 16 2 C -0.14 -1.16 5.41 -26.73 -0.14 -1.31 16 3 C 0.08 0.77 3.77 -27.88 -0.11 0.67 16 4 H 0.10 0.66 7.99 -51.93 -0.42 0.24 16 5 F -0.19 -2.21 16.75 2.25 0.04 -2.17 16 6 C 0.49 5.98 7.17 -10.98 -0.08 5.90 16 7 O -0.53 -8.39 16.61 5.56 0.09 -8.30 16 8 N -0.71 -8.09 5.55 -61.48 -0.34 -8.43 16 9 C 0.18 2.25 5.80 -5.20 -0.03 2.22 16 10 C -0.21 -3.08 5.25 -104.58 -0.55 -3.63 16 11 C -0.06 -0.85 9.69 -39.61 -0.38 -1.23 16 12 C -0.19 -3.54 9.99 -39.39 -0.39 -3.94 16 13 C 0.17 3.59 6.65 -39.11 -0.26 3.33 16 14 O -0.21 -5.29 8.59 0.05 0.00 -5.29 16 15 C -0.39 -10.57 9.95 30.89 0.31 -10.26 16 16 H 0.11 2.93 5.44 -52.48 -0.29 2.65 16 17 C 0.07 1.76 5.49 -17.52 -0.10 1.66 16 18 N -0.87 -24.38 13.96 55.48 0.77 -23.61 16 19 Si 0.91 20.83 28.62 -169.99 -4.86 15.97 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 23 C -0.22 -4.44 9.17 -39.40 -0.36 -4.80 16 24 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.44 7.94 -51.93 -0.41 0.02 16 28 H 0.09 0.83 8.05 -51.92 -0.42 0.41 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.40 3.90 8.36 -40.82 -0.34 3.56 16 31 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 34 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 35 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.14 2.83 5.64 -52.48 -0.30 2.53 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -29.98 325.73 -6.18 -36.16 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.68 Total: 4.00 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -2.11 Total: -13.24 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.43 Total: -32.04 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.86 Total: 15.97 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.98 -6.18 -36.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337059335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.142 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds