Wall clock time and date at job start Tue Mar 31 2020 05:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47395 * 2 1 4 4 H 1.09002 * 109.46828 * 305.00020 * 3 2 1 5 5 C 1.50696 * 109.47304 * 184.99689 * 3 2 1 6 6 H 1.07998 * 120.00244 * 239.99907 * 5 3 2 7 7 C 1.37882 * 119.99904 * 60.00378 * 5 3 2 8 8 N 1.31517 * 119.99604 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 119.99958 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47368 * 89.99722 * 9 7 5 11 11 H 1.48500 * 109.47043 * 209.99539 * 9 7 5 12 12 H 1.48498 * 109.47417 * 329.99754 * 9 7 5 13 13 N 1.46500 * 109.46961 * 64.99475 * 3 2 1 14 14 C 1.34773 * 120.00431 * 275.00501 * 13 3 2 15 15 O 1.21353 * 120.00045 * 359.97438 * 14 13 3 16 16 C 1.49380 * 120.00133 * 180.02562 * 14 13 3 17 17 O 1.21353 * 119.99819 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99763 * 179.97438 * 16 14 13 19 19 C 1.39364 * 119.99617 * 179.71860 * 18 16 14 20 20 C 1.42052 * 126.90072 * 0.28648 * 19 18 16 21 21 C 1.35238 * 103.95656 * 179.97438 * 20 19 18 22 22 C 1.50702 * 126.69153 * 179.97438 * 21 20 19 23 23 O 1.34091 * 106.61723 * 359.97438 * 21 20 19 24 24 N 1.20910 * 111.75305 * 359.70276 * 23 21 20 25 25 H 1.09006 * 109.46788 * 60.00351 * 1 2 3 26 26 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47367 * 300.00338 * 1 2 3 28 28 H 1.09005 * 109.47148 * 239.99769 * 2 1 3 29 29 H 1.08998 * 109.46966 * 120.00271 * 2 1 3 30 30 H 0.97001 * 119.99544 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99456 * 95.00064 * 13 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 18 16 14 33 33 H 1.08001 * 128.01888 * 0.02562 * 20 19 18 34 34 H 1.08995 * 109.46826 * 90.00173 * 22 21 20 35 35 H 1.09004 * 109.47043 * 210.00353 * 22 21 20 36 36 H 1.09002 * 109.47068 * 330.00215 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1434 0.8784 -1.2279 8 7 3.4062 0.3366 -2.1728 9 14 6.0049 0.8812 -1.3817 10 1 6.5549 -0.3503 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5570 2.0737 -0.6901 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3669 15 8 -0.3397 2.6326 0.4335 16 6 0.0401 3.3327 2.6431 17 8 0.8152 3.3648 3.5764 18 7 -1.1770 3.9000 2.7580 19 6 -1.5477 4.5184 3.9507 20 6 -0.7624 4.6407 5.1280 21 6 -1.5632 5.3127 5.9859 22 6 -1.2303 5.7177 7.3989 23 8 -2.7111 5.5485 5.3342 24 7 -2.6855 5.1089 4.2082 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0618 -2.9494 31 1 2.2719 2.1231 1.9977 32 1 -1.7967 3.8740 2.0122 33 1 0.2417 4.2811 5.2982 34 1 -0.7715 6.7063 7.3949 35 1 -2.1431 5.7431 7.9941 36 1 -0.5357 4.9964 7.8295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338680305.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:58 Heat of formation + Delta-G solvation = -7.199393 kcal Electronic energy + Delta-G solvation = -21712.209276 eV Core-core repulsion = 18200.282350 eV Total energy + Delta-G solvation = -3511.926926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.00574 -40.59531 -38.50099 -35.97010 -35.21834 -33.78590 -32.54095 -32.02874 -31.06802 -28.02187 -27.40621 -25.38442 -23.57428 -22.86257 -21.23150 -20.48129 -19.58604 -18.38938 -17.82923 -17.55349 -16.76971 -16.38794 -15.83298 -15.60789 -15.21276 -14.41172 -14.14427 -13.89631 -13.74084 -13.52698 -13.41754 -12.80258 -12.68770 -12.25849 -11.86085 -11.65653 -11.44077 -11.38138 -11.32133 -11.05566 -10.90288 -10.42222 -10.32373 -9.76749 -9.57173 -9.26671 -9.19493 -8.98240 -8.62828 -8.13354 -6.22496 -4.32650 1.13136 1.53899 2.19478 2.37098 2.97501 3.20437 3.27720 3.30210 3.56318 3.78572 4.19641 4.28718 4.72485 4.85086 4.98975 5.03859 5.09829 5.11530 5.32622 5.57125 5.78821 6.21157 6.26053 6.30465 6.49158 6.76464 6.88561 7.01398 7.04901 7.20409 7.38729 7.55869 7.65881 7.74558 8.01827 8.16437 8.32369 8.51988 8.77554 9.34363 10.82886 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030977 B = 0.003613 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.673765 B = 7748.239527 C = 8350.505550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.539 4.539 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.905 3.095 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.663 5.663 14 C 0.500 3.500 15 O -0.524 6.524 16 C 0.518 3.482 17 O -0.499 6.499 18 N -0.611 5.611 19 C 0.249 3.751 20 C -0.226 4.226 21 C -0.027 4.027 22 C -0.072 4.072 23 O 0.097 5.903 24 N -0.388 5.388 25 H 0.052 0.948 26 H 0.027 0.973 27 H 0.034 0.966 28 H 0.105 0.895 29 H 0.035 0.965 30 H 0.266 0.734 31 H 0.403 0.597 32 H 0.431 0.569 33 H 0.192 0.808 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 7.171 14.933 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.577 4.577 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.732 3.268 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.312 5.312 14 C 0.277 3.723 15 O -0.402 6.402 16 C 0.300 3.700 17 O -0.370 6.370 18 N -0.265 5.265 19 C 0.000 4.000 20 C -0.249 4.249 21 C -0.091 4.091 22 C -0.129 4.129 23 O 0.036 5.964 24 N -0.104 5.104 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.123 0.877 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.237 0.763 32 H 0.270 0.730 33 H 0.209 0.791 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.367 7.238 14.005 17.848 hybrid contribution 1.640 -0.307 0.010 1.668 sum -6.728 6.931 14.015 17.021 Atomic orbital electron populations 1.21866 0.98288 0.98552 1.01019 1.21976 0.92648 0.99306 1.02892 1.19068 0.94901 0.89427 0.79892 0.92598 1.21190 0.90187 1.39643 1.06666 0.91702 1.24876 0.98913 0.94551 0.95190 1.69881 1.35330 1.37249 1.09359 0.86390 0.84397 0.78597 0.77430 1.20425 1.21008 1.19739 1.46472 1.13089 1.52283 1.19384 1.19320 0.84760 0.81683 0.86492 1.90772 1.51088 1.59256 1.39068 1.21117 0.80560 0.78342 0.90012 1.90661 1.50343 1.56044 1.39986 1.42255 1.17553 1.53590 1.13074 1.20533 0.91782 0.98152 0.89514 1.22759 1.03933 1.06940 0.91243 1.24436 0.86319 1.00279 0.98061 1.20338 1.03206 1.03088 0.86306 1.84793 1.34277 1.59483 1.17825 1.74070 1.19779 1.18239 0.98299 0.92872 0.95353 0.94700 0.87734 0.94574 0.92372 0.76287 0.73004 0.79135 0.89307 0.89794 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.62 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.41 2.24 -69.08 -0.15 6.25 16 4 H 0.06 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -13.71 8.73 -34.44 -0.30 -14.01 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.71 11.29 55.43 0.63 -23.08 16 9 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 N -0.66 -13.45 5.01 -55.39 -0.28 -13.73 16 14 C 0.50 9.52 6.45 -11.62 -0.08 9.44 16 15 O -0.52 -10.91 13.61 5.49 0.07 -10.83 16 16 C 0.52 8.58 7.85 -11.62 -0.09 8.49 16 17 O -0.50 -8.47 13.75 5.49 0.08 -8.39 16 18 N -0.61 -9.12 5.41 -11.86 -0.06 -9.18 16 19 C 0.25 3.65 8.17 -154.92 -1.27 2.38 16 20 C -0.23 -2.90 9.79 -39.19 -0.38 -3.28 16 21 C -0.03 -0.28 7.48 -35.38 -0.26 -0.54 16 22 C -0.07 -0.39 10.45 36.01 0.38 -0.01 16 23 O 0.10 1.19 11.19 17.05 0.19 1.38 16 24 N -0.39 -5.56 12.10 31.18 0.38 -5.19 16 25 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.03 0.70 5.64 -51.93 -0.29 0.41 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.40 7.56 8.01 -40.82 -0.33 7.23 16 32 H 0.43 5.97 8.29 -40.82 -0.34 5.63 16 33 H 0.19 2.47 6.22 -52.49 -0.33 2.14 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -28.76 309.94 -5.48 -34.24 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -4.05 Total: 10.45 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -2.08 Total: 4.63 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.66 Total: -51.18 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.34 Total: -17.84 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.76 -5.48 -34.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338680305.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.038 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds