Wall clock time and date at job start Tue Mar 31 2020 05:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21353 * 120.00219 * 359.97438 * 14 13 3 16 16 C 1.49381 * 119.99824 * 180.02562 * 14 13 3 17 17 O 1.21358 * 119.99893 * 359.97438 * 16 14 13 18 18 N 1.34776 * 119.99973 * 179.97438 * 16 14 13 19 19 C 1.39359 * 120.00296 * 179.97438 * 18 16 14 20 20 C 1.42053 * 126.89476 * 0.02562 * 19 18 16 21 21 C 1.35241 * 103.95418 * 180.02562 * 20 19 18 22 22 C 1.50701 * 126.69042 * 179.97438 * 21 20 19 23 23 O 1.34086 * 106.61838 * 359.97438 * 21 20 19 24 24 N 1.20919 * 111.75523 * 359.70960 * 23 21 20 25 25 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 32 32 H 0.97004 * 120.00205 * 0.02562 * 18 16 14 33 33 H 1.08002 * 128.02067 * 0.03125 * 20 19 18 34 34 H 1.09007 * 109.46874 * 89.99372 * 22 21 20 35 35 H 1.08993 * 109.47034 * 209.99790 * 22 21 20 36 36 H 1.09001 * 109.47045 * 330.00153 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3354 2.6302 -0.4636 16 6 0.0679 3.3217 -2.6718 17 8 0.8529 3.3503 -3.5969 18 7 -1.1483 3.8877 -2.8022 19 6 -1.5043 4.5062 -3.9991 20 6 -0.7062 4.6246 -5.1683 21 6 -1.4956 5.2986 -6.0352 22 6 -1.1462 5.7019 -7.4445 23 8 -2.6499 5.5381 -5.3962 24 7 -2.6422 5.0889 -4.2735 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8280 1.5270 2.3971 31 1 2.2931 2.1156 -1.9978 32 1 -1.7756 3.8652 -2.0626 33 1 0.2980 4.2606 -5.3279 34 1 -1.4393 4.9090 -8.1327 35 1 -1.6748 6.6198 -7.7014 36 1 -0.0715 5.8685 -7.5189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338680306.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:00 Heat of formation + Delta-G solvation = -7.125787 kcal Electronic energy + Delta-G solvation = -21785.042966 eV Core-core repulsion = 18273.119232 eV Total energy + Delta-G solvation = -3511.923734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.03051 -40.67947 -38.64120 -36.04357 -35.33974 -33.80532 -32.51106 -32.07553 -31.60745 -28.04990 -27.87481 -25.50971 -23.52955 -22.78428 -21.31634 -20.58288 -19.79802 -18.45337 -17.85440 -17.58612 -16.90029 -16.73547 -15.92027 -15.73808 -15.38523 -14.46525 -14.19057 -13.90589 -13.76632 -13.59915 -13.53010 -12.88884 -12.70656 -12.54166 -12.06462 -11.99755 -11.86922 -11.48895 -11.40017 -11.03603 -10.85317 -10.81888 -10.11636 -9.96008 -9.59281 -9.39786 -9.34656 -9.02099 -8.83093 -8.34350 -6.33211 -4.38586 1.08670 1.49452 2.12356 2.32083 2.95002 3.18724 3.27310 3.32307 3.46085 3.69629 4.17305 4.22708 4.69262 4.74118 4.89410 5.01972 5.07970 5.10438 5.31206 5.55631 5.75952 5.90693 5.94534 6.07554 6.17872 6.45064 6.61406 6.71844 6.74692 6.82359 7.04957 7.15558 7.31498 7.52618 7.90411 8.13741 8.31550 8.44579 8.69119 9.26118 10.78038 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031055 B = 0.003815 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.398870 B = 7338.036505 C = 7648.047147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.236 3.764 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.083 0.917 7 C 0.084 3.916 8 N -0.883 5.883 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.257 1.257 12 H -0.284 1.284 13 N -0.658 5.658 14 C 0.499 3.501 15 O -0.529 6.529 16 C 0.517 3.483 17 O -0.495 6.495 18 N -0.611 5.611 19 C 0.249 3.751 20 C -0.226 4.226 21 C -0.026 4.026 22 C -0.072 4.072 23 O 0.097 5.903 24 N -0.388 5.388 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.270 0.730 31 H 0.407 0.593 32 H 0.431 0.569 33 H 0.192 0.808 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.103 5.486 -13.713 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.134 3.866 4 H 0.073 0.927 5 C -0.573 4.573 6 H 0.101 0.899 7 C -0.121 4.121 8 N -0.518 5.518 9 Si 0.697 3.303 10 H -0.197 1.197 11 H -0.182 1.182 12 H -0.210 1.210 13 N -0.308 5.308 14 C 0.278 3.722 15 O -0.407 6.407 16 C 0.299 3.701 17 O -0.366 6.366 18 N -0.265 5.265 19 C 0.000 4.000 20 C -0.249 4.249 21 C -0.090 4.090 22 C -0.130 4.130 23 O 0.036 5.964 24 N -0.104 5.104 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.243 0.757 32 H 0.270 0.730 33 H 0.209 0.791 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.954 5.635 -12.865 19.107 hybrid contribution 0.300 -0.093 0.737 0.801 sum -12.654 5.542 -12.128 18.383 Atomic orbital electron populations 1.21931 0.97388 0.99339 1.01815 1.22118 0.93674 0.98945 1.01880 1.19397 0.96161 0.89333 0.81692 0.92673 1.20964 0.88181 1.52898 0.95293 0.89943 1.24916 0.94926 0.93443 0.98853 1.69868 1.09620 1.47742 1.24586 0.86938 0.81305 0.79609 0.82407 1.19734 1.18159 1.20972 1.46605 1.12958 1.52195 1.19006 1.19463 0.84695 0.81508 0.86582 1.90759 1.50572 1.59402 1.39980 1.21021 0.80656 0.78461 0.89918 1.90679 1.49590 1.55760 1.40620 1.42237 1.17461 1.53668 1.13103 1.20522 0.91651 0.98381 0.89471 1.22766 1.04062 1.06911 0.91134 1.24442 0.86358 1.00117 0.98083 1.20344 1.03333 1.02891 0.86400 1.84794 1.34239 1.58934 1.18407 1.74072 1.19669 1.18328 0.98307 0.94618 0.92842 0.93574 0.92541 0.91459 0.92019 0.75713 0.73047 0.79095 0.89295 0.89777 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.53 37.16 0.32 -2.41 16 2 C -0.13 -2.59 5.54 -26.73 -0.15 -2.74 16 3 C 0.24 5.26 1.82 -69.08 -0.13 5.14 16 4 H 0.06 1.32 4.92 -51.93 -0.26 1.07 16 5 C -0.54 -13.81 9.05 -34.44 -0.31 -14.12 16 6 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 8 N -0.88 -25.22 13.96 55.43 0.77 -24.44 16 9 Si 0.87 20.50 26.69 -169.99 -4.54 15.97 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.26 -5.85 6.88 56.52 0.39 -5.46 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.66 -12.83 5.02 -55.38 -0.28 -13.11 16 14 C 0.50 9.09 6.49 -11.62 -0.08 9.02 16 15 O -0.53 -10.38 13.61 5.49 0.07 -10.31 16 16 C 0.52 8.31 7.85 -11.62 -0.09 8.22 16 17 O -0.50 -8.25 13.75 5.49 0.08 -8.18 16 18 N -0.61 -8.82 5.41 -11.86 -0.06 -8.88 16 19 C 0.25 3.56 8.17 -154.93 -1.27 2.29 16 20 C -0.23 -2.85 9.79 -39.19 -0.38 -3.23 16 21 C -0.03 -0.27 7.48 -35.37 -0.26 -0.53 16 22 C -0.07 -0.38 10.45 36.01 0.38 -0.01 16 23 O 0.10 1.17 11.19 17.05 0.19 1.36 16 24 N -0.39 -5.45 12.10 31.18 0.38 -5.07 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.04 7.88 -51.93 -0.41 0.63 16 27 H 0.05 0.84 5.63 -51.93 -0.29 0.55 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.41 7.90 -51.93 -0.41 1.00 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.41 7.49 8.06 -40.82 -0.33 7.16 16 32 H 0.43 5.71 8.29 -40.82 -0.34 5.37 16 33 H 0.19 2.44 6.22 -52.49 -0.33 2.11 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -29.80 309.44 -4.84 -34.64 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -4.05 Total: 9.58 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.07 Total: 3.78 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.81 Total: -51.51 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.34 Total: -17.12 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.54 Total: 15.97 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.80 -4.84 -34.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338680306.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.513 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds