Wall clock time and date at job start Tue Mar 31 2020 05:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21354 * 120.00449 * 0.02562 * 14 13 3 16 16 C 1.49383 * 119.99554 * 179.97438 * 14 13 3 17 17 O 1.21354 * 119.99997 * 0.02562 * 16 14 13 18 18 N 1.34780 * 119.99909 * 180.02562 * 16 14 13 19 19 C 1.39359 * 119.99831 * 180.02562 * 18 16 14 20 20 N 1.30747 * 126.90099 * 0.02878 * 19 18 16 21 21 O 1.20912 * 111.46820 * 180.02562 * 20 19 18 22 22 C 1.34081 * 111.75789 * 359.97438 * 21 20 19 23 23 C 1.35251 * 106.61706 * 359.72833 * 22 21 20 24 24 C 1.50699 * 128.02302 * 180.25368 * 23 22 21 25 25 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 32 32 H 0.96998 * 119.99716 * 0.02562 * 18 16 14 33 33 H 1.08001 * 126.69794 * 179.97438 * 22 21 20 34 34 H 1.08999 * 109.47239 * 270.18137 * 24 23 22 35 35 H 1.08993 * 109.47246 * 30.18224 * 24 23 22 36 36 H 1.09002 * 109.46857 * 150.18134 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3400 2.6319 0.4337 16 6 0.0399 3.3318 2.6435 17 8 0.8149 3.3639 3.5767 18 7 -1.1777 3.8984 2.7588 19 6 -1.5463 4.5214 3.9496 20 7 -0.8228 4.6353 5.0327 21 8 -1.4179 5.2289 5.9019 22 6 -2.6436 5.5974 5.5025 23 6 -2.7812 5.1660 4.2280 24 6 -3.9702 5.3279 3.3164 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0607 -2.9502 31 1 2.2720 2.1231 1.9978 32 1 -1.7972 3.8724 2.0129 33 1 -3.3767 6.1372 6.0836 34 1 -4.6422 4.4789 3.4415 35 1 -4.4973 6.2484 3.5668 36 1 -3.6310 5.3734 2.2815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343322416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:03 Heat of formation + Delta-G solvation = -5.456710 kcal Electronic energy + Delta-G solvation = -21846.096838 eV Core-core repulsion = 18334.245481 eV Total energy + Delta-G solvation = -3511.851357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.02738 -40.43647 -38.38277 -36.14956 -35.27987 -33.66600 -32.44801 -31.54005 -31.02449 -28.36539 -27.36117 -25.36598 -23.21855 -22.19092 -21.97893 -20.06150 -19.49330 -18.85886 -17.97328 -17.74995 -16.52456 -16.23517 -15.69485 -15.47891 -15.13068 -14.38967 -14.24200 -14.05902 -13.61213 -13.49946 -13.34845 -12.78058 -12.54613 -12.20841 -11.73373 -11.60501 -11.50771 -11.34356 -11.15839 -10.98981 -10.89563 -10.38421 -10.29397 -9.73526 -9.61211 -9.17864 -9.14853 -8.90144 -8.59806 -8.08835 -6.19999 -4.29627 1.30933 1.49036 2.33110 2.37081 3.15607 3.21787 3.30056 3.34024 3.65740 3.77597 4.12256 4.30563 4.59069 4.73763 4.95891 5.10209 5.12797 5.25330 5.34909 5.45247 5.76187 6.17184 6.28055 6.32830 6.51445 6.84447 6.91677 7.03855 7.09595 7.23369 7.42293 7.59940 7.71727 7.80296 8.04634 8.28979 8.38194 8.56815 8.81712 9.37346 10.85463 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031678 B = 0.003753 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.671062 B = 7458.811739 C = 8000.208068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.665 5.665 14 C 0.500 3.500 15 O -0.529 6.529 16 C 0.499 3.501 17 O -0.475 6.475 18 N -0.614 5.614 19 C 0.242 3.758 20 N -0.346 5.346 21 O 0.101 5.899 22 C -0.051 4.051 23 C -0.216 4.216 24 C -0.078 4.078 25 H 0.027 0.973 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.035 0.965 30 H 0.265 0.735 31 H 0.403 0.597 32 H 0.433 0.567 33 H 0.218 0.782 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.265 8.524 10.752 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.313 5.313 14 C 0.278 3.722 15 O -0.407 6.407 16 C 0.280 3.720 17 O -0.343 6.343 18 N -0.270 5.270 19 C -0.008 4.008 20 N -0.059 5.059 21 O 0.038 5.962 22 C -0.132 4.132 23 C -0.222 4.222 24 C -0.135 4.135 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.123 0.877 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.237 0.763 32 H 0.273 0.727 33 H 0.235 0.765 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.903 7.974 10.867 18.659 hybrid contribution 0.144 0.136 -0.512 0.549 sum -12.759 8.109 10.355 18.324 Atomic orbital electron populations 1.21861 0.98308 0.98482 1.01001 1.21973 0.92660 0.99336 1.02863 1.19058 0.94901 0.89422 0.79953 0.92625 1.21247 0.90257 1.39412 1.06628 0.91667 1.24872 0.98900 0.94549 0.95207 1.69889 1.35213 1.37475 1.09322 0.86344 0.84448 0.77864 0.78220 1.19600 1.20774 1.20802 1.46482 1.13254 1.52270 1.19344 1.19421 0.84655 0.81513 0.86630 1.90741 1.51141 1.59571 1.39285 1.21223 0.81343 0.79289 0.90107 1.90831 1.49538 1.54272 1.39670 1.42436 1.17666 1.54135 1.12728 1.20504 0.91776 0.99547 0.89021 1.74493 1.18185 1.15290 0.97963 1.84932 1.22906 1.53729 1.34584 1.25609 0.89674 1.02519 0.95431 1.21047 0.97240 1.06589 0.97294 1.20109 0.93076 1.02838 0.97487 0.95402 0.94687 0.92881 0.87746 0.94602 0.92470 0.76289 0.72748 0.76524 0.90619 0.90547 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.64 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.58 2.24 -69.08 -0.15 6.43 16 4 H 0.06 1.54 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.07 1.67 7.74 -52.49 -0.41 1.27 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.03 11.29 55.43 0.63 -23.41 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.66 -14.22 5.01 -55.39 -0.28 -14.50 16 14 C 0.50 9.94 6.46 -11.62 -0.08 9.87 16 15 O -0.53 -11.08 13.61 5.49 0.07 -11.00 16 16 C 0.50 9.03 7.85 -11.62 -0.09 8.94 16 17 O -0.47 -9.68 15.25 5.49 0.08 -9.60 16 18 N -0.61 -9.06 5.41 -11.86 -0.06 -9.13 16 19 C 0.24 3.42 7.90 -154.93 -1.22 2.20 16 20 N -0.35 -5.53 10.38 31.18 0.32 -5.20 16 21 O 0.10 1.24 11.19 17.07 0.19 1.43 16 22 C -0.05 -0.41 12.25 29.67 0.36 -0.05 16 23 C -0.22 -2.09 6.34 -104.23 -0.66 -2.75 16 24 C -0.08 -0.49 10.47 36.01 0.38 -0.11 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.03 0.72 5.64 -51.93 -0.29 0.42 16 27 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 28 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.40 8.21 8.01 -40.82 -0.33 7.89 16 32 H 0.43 5.33 8.23 -40.82 -0.34 5.00 16 33 H 0.22 0.62 8.06 -52.49 -0.42 0.19 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 LS Contribution 312.51 15.07 4.71 4.71 Total: -1.00 -31.63 312.51 -5.18 -36.82 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -4.14 Total: 8.40 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -1.69 Total: 6.02 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.61 Total: -52.24 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.35 Total: -19.17 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.63 -5.18 -36.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343322416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.359 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds