Wall clock time and date at job start Tue Mar 31 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21354 * 120.00449 * 0.02562 * 14 13 3 16 16 C 1.49383 * 119.99554 * 179.97438 * 14 13 3 17 17 O 1.21354 * 119.99997 * 0.02562 * 16 14 13 18 18 N 1.34780 * 119.99909 * 180.02562 * 16 14 13 19 19 C 1.39359 * 119.99831 * 180.02562 * 18 16 14 20 20 N 1.30747 * 126.90099 * 0.02878 * 19 18 16 21 21 O 1.20912 * 111.46820 * 180.02562 * 20 19 18 22 22 C 1.34081 * 111.75789 * 359.97438 * 21 20 19 23 23 C 1.35251 * 106.61706 * 359.72833 * 22 21 20 24 24 C 1.50699 * 128.02302 * 180.25368 * 23 22 21 25 25 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 32 32 H 0.96998 * 119.99716 * 0.02562 * 18 16 14 33 33 H 1.08001 * 126.69794 * 179.97438 * 22 21 20 34 34 H 1.08999 * 109.47239 * 270.18137 * 24 23 22 35 35 H 1.08993 * 109.47246 * 30.18224 * 24 23 22 36 36 H 1.09002 * 109.46857 * 150.18134 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3400 2.6319 0.4337 16 6 0.0399 3.3318 2.6435 17 8 0.8149 3.3639 3.5767 18 7 -1.1777 3.8984 2.7588 19 6 -1.5463 4.5214 3.9496 20 7 -0.8228 4.6353 5.0327 21 8 -1.4179 5.2289 5.9019 22 6 -2.6436 5.5974 5.5025 23 6 -2.7812 5.1660 4.2280 24 6 -3.9702 5.3279 3.3164 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0607 -2.9502 31 1 2.2720 2.1231 1.9978 32 1 -1.7972 3.8724 2.0129 33 1 -3.3767 6.1372 6.0836 34 1 -4.6422 4.4789 3.4415 35 1 -4.4973 6.2484 3.5668 36 1 -3.6310 5.3734 2.2815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343322416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:02 Heat of formation + Delta-G solvation = -28.044031 kcal Electronic energy + Delta-G solvation = -21847.076298 eV Core-core repulsion = 18334.245481 eV Total energy + Delta-G solvation = -3512.830817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.98267 -41.93929 -39.96399 -37.47269 -36.93439 -34.65420 -34.27656 -32.87195 -32.57633 -29.27571 -28.97071 -26.87522 -25.01652 -23.33613 -23.09783 -21.64464 -21.11567 -20.16964 -19.21396 -18.73752 -18.17704 -17.76803 -17.22643 -16.98537 -16.74294 -16.04438 -15.63636 -15.11337 -15.00848 -14.64736 -14.13813 -14.09965 -13.93768 -13.54949 -13.25368 -13.15956 -13.02517 -12.86939 -12.83275 -12.71866 -12.21560 -12.13796 -12.08780 -11.63066 -11.13101 -10.78213 -10.58503 -10.35221 -10.00318 -9.89374 -8.21421 -6.38365 0.02029 0.65114 1.01437 1.26464 1.42557 1.44950 1.56381 2.13131 2.31985 2.45023 2.57253 3.08402 3.21766 3.39146 3.75131 4.06176 4.29781 4.46071 4.52175 4.67962 4.83453 4.84459 4.94695 4.98295 5.00729 5.19023 5.28944 5.33933 5.35429 5.52887 5.59759 5.72933 5.80795 6.07827 6.34869 6.61329 6.68322 7.00663 7.33120 7.40918 8.84007 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031678 B = 0.003753 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.671062 B = 7458.811739 C = 8000.208068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.019 0.981 5 C -0.556 4.556 6 H 0.066 0.934 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.280 1.280 13 N -0.669 5.669 14 C 0.503 3.497 15 O -0.539 6.539 16 C 0.507 3.493 17 O -0.502 6.502 18 N -0.599 5.599 19 C 0.208 3.792 20 N -0.395 5.395 21 O 0.098 5.902 22 C -0.027 4.027 23 C -0.216 4.216 24 C -0.077 4.077 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.268 0.732 31 H 0.407 0.593 32 H 0.443 0.557 33 H 0.274 0.726 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.724 9.515 12.007 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.037 0.963 5 C -0.594 4.594 6 H 0.084 0.916 7 C -0.178 4.178 8 N -0.546 5.546 9 Si 0.794 3.206 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.206 1.206 13 N -0.318 5.318 14 C 0.282 3.718 15 O -0.418 6.418 16 C 0.288 3.712 17 O -0.373 6.373 18 N -0.254 5.254 19 C -0.041 4.041 20 N -0.108 5.108 21 O 0.034 5.966 22 C -0.108 4.108 23 C -0.222 4.222 24 C -0.134 4.134 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.243 0.757 32 H 0.284 0.716 33 H 0.290 0.710 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.409 8.981 12.123 20.863 hybrid contribution 0.451 -0.078 -0.840 0.957 sum -13.958 8.903 11.283 20.035 Atomic orbital electron populations 1.21718 0.96439 0.99819 1.00453 1.21832 0.94284 0.98419 1.01760 1.18703 0.94176 0.89670 0.80077 0.96299 1.21538 0.91202 1.39665 1.06971 0.91590 1.25662 1.03190 0.94090 0.94830 1.70005 1.36933 1.37893 1.09735 0.85342 0.79187 0.77969 0.78130 1.19168 1.20184 1.20563 1.46272 1.14159 1.52876 1.18531 1.19690 0.83899 0.80871 0.87299 1.90728 1.51334 1.59770 1.40013 1.20652 0.82324 0.79537 0.88733 1.90822 1.50636 1.55755 1.40098 1.42177 1.16461 1.53085 1.13695 1.20970 0.93769 1.00908 0.88415 1.74491 1.20261 1.16865 0.99147 1.84862 1.24602 1.53287 1.33841 1.26658 0.88408 1.00567 0.95133 1.21490 0.96543 1.05764 0.98424 1.20254 0.91948 1.04717 0.96509 0.93094 0.94292 0.94229 0.90064 0.94290 0.92276 0.75745 0.71553 0.71014 0.89594 0.87716 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 8.51 71.98 0.61 -4.77 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.28 13.96 2.24 44.24 0.10 14.06 16 4 H 0.02 1.10 7.58 -2.39 -0.02 1.08 16 5 C -0.56 -29.62 8.73 25.60 0.22 -29.40 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 1.24 5.29 84.65 0.45 1.69 16 8 N -0.91 -50.33 11.29 21.45 0.24 -50.08 16 9 Si 0.97 42.17 29.54 68.60 2.03 44.20 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.67 -29.33 5.01 -447.51 -2.24 -31.57 16 14 C 0.50 20.37 6.46 87.25 0.56 20.93 16 15 O -0.54 -22.91 13.61 -3.26 -0.04 -22.96 16 16 C 0.51 18.57 7.85 87.25 0.68 19.26 16 17 O -0.50 -20.88 15.25 -3.26 -0.05 -20.93 16 18 N -0.60 -17.53 5.41 -310.82 -1.68 -19.22 16 19 C 0.21 5.70 7.90 134.16 1.06 6.76 16 20 N -0.40 -12.45 10.38 -56.35 -0.59 -13.03 16 21 O 0.10 2.23 11.19 71.26 0.80 3.03 16 22 C -0.03 -0.34 12.25 67.13 0.82 0.48 16 23 C -0.22 -3.60 6.34 -19.61 -0.12 -3.73 16 24 C -0.08 -0.71 10.47 71.24 0.75 0.03 16 25 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.04 1.59 5.64 -2.39 -0.01 1.58 16 27 H 0.04 1.76 7.85 -2.39 -0.02 1.74 16 28 H 0.08 4.32 5.95 -2.39 -0.01 4.30 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 30 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 31 H 0.41 17.05 8.01 -92.70 -0.74 16.31 16 32 H 0.44 10.69 8.23 -92.71 -0.76 9.93 16 33 H 0.27 -0.05 8.06 -2.91 -0.02 -0.08 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 Total: -1.00 -70.60 312.51 3.40 -67.20 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -0.36 Total: 23.85 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 5.30 Total: 19.51 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -4.27 Total: -113.90 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: 0.70 Total: -40.86 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -70.60 3.40 -67.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343322416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.156 kcal (2) G-P(sol) polarization free energy of solvation -70.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds