Wall clock time and date at job start Tue Mar 31 2020 06:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47354 * 2 1 4 4 C 1.50703 * 109.46723 * 240.00689 * 2 1 3 5 5 H 1.07999 * 119.99944 * 275.29602 * 4 2 1 6 6 C 1.37876 * 120.00399 * 95.30089 * 4 2 1 7 7 N 1.31515 * 120.00160 * 180.74243 * 6 4 2 8 8 Si 1.86801 * 119.99668 * 0.74449 * 6 4 2 9 9 H 1.48502 * 109.47058 * 89.49432 * 8 6 4 10 10 H 1.48500 * 109.46840 * 209.48979 * 8 6 4 11 11 H 1.48500 * 109.47552 * 329.49181 * 8 6 4 12 12 C 1.50701 * 109.47586 * 120.00488 * 2 1 3 13 13 O 1.21277 * 120.00072 * 119.99737 * 12 2 1 14 14 N 1.34776 * 119.99498 * 300.00075 * 12 2 1 15 15 C 1.46504 * 119.99269 * 179.97438 * 14 12 2 16 16 H 1.08996 * 109.47497 * 34.99957 * 15 14 12 17 17 C 1.50695 * 109.47000 * 274.99257 * 15 14 12 18 18 O 1.20825 * 120.00325 * 334.09281 * 17 15 14 19 19 O 1.34234 * 119.99842 * 154.08898 * 17 15 14 20 20 C 1.50702 * 109.46534 * 154.99728 * 15 14 12 21 21 C 1.35313 * 126.12898 * 33.74937 * 20 15 14 22 22 C 1.39873 * 107.91886 * 179.89943 * 21 20 15 23 23 N 1.30828 * 108.20371 * 0.36335 * 22 21 20 24 24 N 1.34954 * 126.12517 * 214.05489 * 20 15 14 25 25 C 1.46501 * 126.03503 * 359.97438 * 24 20 15 26 26 H 1.09000 * 109.47465 * 176.34187 * 1 2 3 27 27 H 1.09010 * 109.46770 * 296.34135 * 1 2 3 28 28 H 1.09003 * 109.47624 * 56.33665 * 1 2 3 29 29 H 0.97001 * 119.99816 * 179.97438 * 7 6 4 30 30 H 0.97001 * 120.00654 * 359.97438 * 14 12 2 31 31 H 0.96700 * 117.00267 * 180.02562 * 19 17 15 32 32 H 1.07996 * 126.04315 * 0.03215 * 21 20 15 33 33 H 1.08006 * 125.89835 * 180.13986 * 22 21 20 34 34 H 1.09005 * 109.46582 * 93.69010 * 25 24 20 35 35 H 1.09005 * 109.46623 * 213.68673 * 25 24 20 36 36 H 1.08989 * 109.47155 * 333.68779 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.1308 -1.7858 -1.2309 6 6 2.3660 0.0128 -2.3561 7 7 2.7904 -0.6083 -3.4348 8 14 2.2154 1.8747 -2.3486 9 1 3.4902 2.4725 -1.8765 10 1 1.9237 2.3532 -3.7238 11 1 1.1127 2.2786 -1.4396 12 6 2.0324 -0.7105 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1948 -0.9412 3.6506 16 1 3.1939 -1.3337 3.4612 17 6 1.2645 -2.0773 3.9890 18 8 0.1064 -2.0321 3.6474 19 8 1.7224 -3.1396 4.6699 20 6 2.2458 0.0270 4.8043 21 6 1.3923 1.0541 5.0222 22 6 1.7880 1.7006 6.1978 23 7 2.8459 1.0885 6.6645 24 7 3.1544 0.0285 5.8022 25 6 4.2669 -0.9122 5.9562 26 1 -0.3634 -1.0255 -0.0656 27 1 -0.3633 0.4560 0.9211 28 1 -0.3634 0.5696 -0.8553 29 1 3.0249 -0.0995 -4.2268 30 1 1.1494 0.5388 2.5436 31 1 1.0883 -3.8436 4.8634 32 1 0.5525 1.3255 4.3997 33 1 1.3058 2.5592 6.6415 34 1 5.1636 -0.4921 5.5005 35 1 4.4475 -1.0907 7.0163 36 1 4.0172 -1.8534 5.4666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:12 Heat of formation + Delta-G solvation = -42.773931 kcal Electronic energy + Delta-G solvation = -22411.914537 eV Core-core repulsion = 18898.444984 eV Total energy + Delta-G solvation = -3513.469553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.72646 -40.25205 -38.89061 -36.22952 -34.82707 -33.76631 -33.47881 -31.58104 -30.41436 -27.62120 -26.90541 -25.27189 -23.17757 -22.06064 -21.38863 -20.00834 -19.49863 -18.23397 -17.44213 -17.13697 -17.08646 -15.73101 -15.55604 -15.50376 -15.33954 -14.47655 -14.30463 -14.11822 -13.82844 -13.44920 -13.03371 -12.87492 -12.61382 -12.51847 -12.26247 -12.25004 -11.59027 -11.49758 -11.16060 -11.00631 -10.87345 -10.74012 -10.35436 -9.84587 -9.58165 -9.22634 -9.03324 -8.93305 -8.77584 -8.61587 -6.10472 -4.10951 1.42715 2.04207 2.19961 2.53138 2.81277 3.21076 3.29179 3.31579 3.44614 3.64331 4.11138 4.34839 4.36589 4.75405 4.98643 5.00161 5.10041 5.19742 5.26731 5.41420 5.45480 5.74428 5.88900 6.12842 6.35960 6.38173 6.39904 6.48021 6.51504 6.66204 6.79717 7.16156 7.42653 7.46683 7.77772 7.88685 8.46588 8.87095 9.04073 9.47874 11.02502 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.005160 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.096693 B = 5425.188565 C = 5876.643910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 H 0.059 0.941 4 C -0.497 4.497 5 H 0.086 0.914 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.870 3.130 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.261 1.261 12 C 0.525 3.475 13 O -0.522 6.522 14 N -0.719 5.719 15 C 0.225 3.775 16 H 0.129 0.871 17 C 0.475 3.525 18 O -0.491 6.491 19 O -0.516 6.516 20 C 0.074 3.926 21 C -0.248 4.248 22 C 0.048 3.952 23 N -0.285 5.285 24 N -0.358 5.358 25 C 0.091 3.909 26 H 0.053 0.947 27 H 0.029 0.971 28 H 0.057 0.943 29 H 0.265 0.735 30 H 0.407 0.593 31 H 0.411 0.589 32 H 0.153 0.847 33 H 0.188 0.812 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 2.525 19.676 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 H 0.077 0.923 4 C -0.535 4.535 5 H 0.104 0.896 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.697 3.303 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.186 1.186 12 C 0.315 3.685 13 O -0.394 6.394 14 N -0.377 5.377 15 C 0.114 3.886 16 H 0.146 0.854 17 C 0.312 3.688 18 O -0.376 6.376 19 O -0.328 6.328 20 C -0.055 4.055 21 C -0.278 4.278 22 C -0.137 4.137 23 N -0.107 5.107 24 N -0.141 5.141 25 C -0.050 4.050 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.244 0.756 31 H 0.270 0.730 32 H 0.171 0.829 33 H 0.205 0.795 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.110 1.993 20.106 20.205 hybrid contribution -1.304 0.868 -0.565 1.665 sum -1.415 2.861 19.541 19.800 Atomic orbital electron populations 1.21967 0.96289 1.01581 0.99429 1.19350 0.94333 0.97035 0.91375 0.92333 1.20720 1.43178 0.96146 0.93462 0.89585 1.25020 0.94374 0.98094 0.95450 1.69879 1.44159 1.35848 1.03125 0.86973 0.79089 0.86490 0.77760 1.20155 1.21106 1.18579 1.22156 0.78367 0.84543 0.83473 1.90604 1.36659 1.26027 1.86125 1.46276 1.55931 1.32262 1.03264 1.18253 0.98735 0.87227 0.84356 0.85386 1.23743 0.88092 0.82760 0.74162 1.90723 1.18842 1.79083 1.48907 1.84476 1.48114 1.30795 1.69428 1.20344 0.93832 0.98987 0.92320 1.21297 1.04862 0.99770 1.01860 1.23850 0.94452 1.00198 0.95202 1.77394 1.17740 1.00084 1.15509 1.48499 1.23093 1.24449 1.18084 1.22049 0.86944 0.91227 1.04788 0.92808 0.95216 0.92439 0.92469 0.75623 0.72986 0.82893 0.79468 0.90107 0.88945 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.09 37.16 0.34 -2.35 16 2 C 0.00 0.02 2.22 -92.92 -0.21 -0.19 16 3 H 0.06 1.27 5.37 -51.93 -0.28 1.00 16 4 C -0.50 -14.00 8.36 -34.44 -0.29 -14.28 16 5 H 0.09 2.76 7.62 -52.49 -0.40 2.36 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 7 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 8 Si 0.87 20.43 26.79 -169.99 -4.55 15.87 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.26 -5.61 6.52 56.52 0.37 -5.24 16 12 C 0.53 11.26 7.11 -10.99 -0.08 11.18 16 13 O -0.52 -12.98 15.43 5.56 0.09 -12.89 16 14 N -0.72 -11.87 4.55 -56.07 -0.26 -12.13 16 15 C 0.22 3.27 2.51 -70.23 -0.18 3.09 16 16 H 0.13 1.87 6.89 -51.93 -0.36 1.51 16 17 C 0.47 7.06 7.47 36.00 0.27 7.33 16 18 O -0.49 -8.57 17.39 -18.75 -0.33 -8.90 16 19 O -0.52 -5.86 13.42 -39.27 -0.53 -6.38 16 20 C 0.07 0.94 5.97 -82.26 -0.49 0.45 16 21 C -0.25 -2.91 9.96 -40.01 -0.40 -3.31 16 22 C 0.05 0.52 12.03 -17.37 -0.21 0.31 16 23 N -0.29 -3.59 12.57 30.62 0.39 -3.20 16 24 N -0.36 -4.30 4.01 -63.88 -0.26 -4.55 16 25 C 0.09 0.78 11.14 59.85 0.67 1.45 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.03 0.48 7.46 -51.92 -0.39 0.09 16 28 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.41 5.76 6.67 -40.82 -0.27 5.49 16 31 H 0.41 2.92 9.10 45.56 0.41 3.34 16 32 H 0.15 1.56 7.38 -52.49 -0.39 1.17 16 33 H 0.19 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.75 7.39 -51.93 -0.38 0.37 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -36.51 316.55 -3.89 -40.39 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -3.31 Total: 7.70 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -0.67 Total: 5.65 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.65 Total: -46.22 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.77 Total: -28.17 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.55 Total: 15.87 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.51 -3.89 -40.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.380 kcal (2) G-P(sol) polarization free energy of solvation -36.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds