Wall clock time and date at job start Tue Mar 31 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1 6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1 7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47136 * 90.00100 * 8 6 4 10 10 H 1.48500 * 109.46954 * 210.00202 * 8 6 4 11 11 H 1.48503 * 109.47010 * 330.00034 * 8 6 4 12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1 14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 16 16 H 1.09001 * 109.47884 * 324.99780 * 15 14 12 17 17 C 1.50707 * 109.47332 * 85.00137 * 15 14 12 18 18 O 1.20821 * 119.99616 * 359.97438 * 17 15 14 19 19 O 1.34228 * 120.00220 * 179.97438 * 17 15 14 20 20 C 1.50701 * 109.47133 * 204.99448 * 15 14 12 21 21 C 1.35314 * 126.12321 * 5.02867 * 20 15 14 22 22 C 1.39873 * 107.92119 * 179.97438 * 21 20 15 23 23 N 1.30836 * 108.19929 * 359.97438 * 22 21 20 24 24 N 1.34949 * 126.13019 * 184.71251 * 20 15 14 25 25 C 1.46499 * 126.03624 * 0.04297 * 24 20 15 26 26 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 27 27 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 28 28 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 29 29 H 0.97006 * 119.99301 * 180.02562 * 7 6 4 30 30 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 31 31 H 0.96696 * 117.00128 * 179.97438 * 19 17 15 32 32 H 1.08000 * 126.04030 * 359.94044 * 21 20 15 33 33 H 1.07998 * 125.90410 * 179.97438 * 22 21 20 34 34 H 1.08995 * 109.47738 * 89.99511 * 25 24 20 35 35 H 1.09004 * 109.47291 * 210.00022 * 25 24 20 36 36 H 1.09006 * 109.46999 * 329.99395 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8299 2.6033 8 14 2.3213 -1.1200 4.0081 9 1 3.6295 -0.5455 4.4125 10 1 1.3429 -0.9488 5.1121 11 1 2.4858 -2.5659 3.7122 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1189 14 7 1.7114 -0.2468 -2.4545 15 6 2.2048 -0.9340 -3.6505 16 1 3.2035 -1.3263 -3.4584 17 6 1.2767 -2.0701 -3.9960 18 8 0.3034 -2.2840 -3.3129 19 8 1.5315 -2.8442 -5.0625 20 6 2.2596 0.0374 -4.8014 21 6 2.0035 1.3646 -4.7379 22 6 2.1664 1.8962 -6.0214 23 7 2.5085 0.9231 -6.8264 24 7 2.5786 -0.2594 -6.0786 25 6 2.9326 -1.5847 -6.5929 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7086 1.1615 3.4843 30 1 1.1537 0.5418 -2.5435 31 1 0.9080 -3.5607 -5.2439 32 1 1.7225 1.9159 -3.8528 33 1 2.0328 2.9310 -6.2999 34 1 2.0304 -2.0986 -6.9246 35 1 3.6191 -1.4771 -7.4327 36 1 3.4118 -2.1645 -5.8040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210239.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:22 Heat of formation + Delta-G solvation = -39.210712 kcal Electronic energy + Delta-G solvation = -22473.753228 eV Core-core repulsion = 18960.438187 eV Total energy + Delta-G solvation = -3513.315041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.68166 -40.19723 -38.79596 -36.28696 -34.79140 -33.78605 -33.32795 -31.13206 -29.91831 -27.57114 -26.74603 -25.13077 -23.15666 -21.99071 -21.23067 -20.02209 -19.54875 -18.18991 -17.43934 -17.14883 -16.41374 -15.89840 -15.46713 -15.20020 -15.08566 -14.47317 -14.27821 -14.07967 -13.67956 -13.48138 -12.91944 -12.85109 -12.53539 -12.27724 -12.21038 -11.55254 -11.52257 -11.01016 -10.88995 -10.78404 -10.71245 -10.69143 -10.26036 -9.98624 -9.47547 -9.00978 -8.94237 -8.80960 -8.64429 -8.36233 -6.03972 -4.07366 1.56692 2.10054 2.33836 2.59766 2.83020 3.33951 3.39670 3.45380 3.55583 3.68208 4.13172 4.46235 4.48408 4.94316 5.03454 5.10868 5.20251 5.29663 5.49726 5.53573 5.57701 5.88776 6.10296 6.35467 6.50155 6.59208 6.65945 6.77879 6.85939 6.93825 7.45638 7.52641 7.74267 7.78323 7.89404 8.06856 8.32010 8.98684 9.02863 9.57837 11.03584 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027539 B = 0.004548 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.485864 B = 6155.451668 C = 6603.328604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.035 3.965 3 H 0.057 0.943 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.531 3.469 13 O -0.539 6.539 14 N -0.718 5.718 15 C 0.228 3.772 16 H 0.137 0.863 17 C 0.461 3.539 18 O -0.480 6.480 19 O -0.519 6.519 20 C 0.072 3.928 21 C -0.251 4.251 22 C 0.047 3.953 23 N -0.291 5.291 24 N -0.358 5.358 25 C 0.105 3.895 26 H 0.094 0.906 27 H 0.013 0.987 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.408 0.592 31 H 0.405 0.595 32 H 0.154 0.846 33 H 0.187 0.813 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 -0.710 -17.980 18.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.014 3.986 3 H 0.075 0.925 4 C -0.541 4.541 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.322 3.678 13 O -0.413 6.413 14 N -0.375 5.375 15 C 0.117 3.883 16 H 0.154 0.846 17 C 0.299 3.701 18 O -0.364 6.364 19 O -0.332 6.332 20 C -0.057 4.057 21 C -0.281 4.281 22 C -0.137 4.137 23 N -0.113 5.113 24 N -0.141 5.141 25 C -0.035 4.035 26 H 0.113 0.887 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.245 0.755 31 H 0.265 0.735 32 H 0.172 0.828 33 H 0.204 0.796 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.941 -1.543 -18.691 18.855 hybrid contribution -0.680 -0.367 1.435 1.630 sum 1.261 -1.909 -17.256 17.407 Atomic orbital electron populations 1.21739 0.96076 1.00196 1.00971 1.18893 0.94430 0.96871 0.88428 0.92528 1.21112 1.31183 1.12899 0.88885 0.90775 1.24937 0.95043 0.95075 0.99095 1.69874 1.36875 1.23061 1.23607 0.86437 0.78429 0.80234 0.82024 1.20640 1.21273 1.19781 1.22258 0.77617 0.84078 0.83865 1.90541 1.37807 1.26620 1.86349 1.46161 1.55794 1.32214 1.03292 1.18380 0.98198 0.87319 0.84412 0.84596 1.24040 0.85590 0.82908 0.77565 1.90775 1.27808 1.68820 1.49018 1.84788 1.56867 1.44987 1.46573 1.20474 1.03301 0.95533 0.86380 1.21270 1.14408 0.92721 0.99683 1.23839 0.99291 0.99156 0.91460 1.77381 1.24009 0.90534 1.19361 1.48497 1.52470 1.08338 1.04765 1.22073 1.02161 0.78215 1.01091 0.88743 0.96811 0.94747 0.92907 0.75535 0.73533 0.82803 0.79572 0.89699 0.89904 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.85 2.64 -92.92 -0.25 0.61 16 3 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16 4 C -0.50 -14.09 8.37 -34.44 -0.29 -14.38 16 5 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.53 11.81 6.97 -10.98 -0.08 11.73 16 13 O -0.54 -13.53 15.12 5.55 0.08 -13.45 16 14 N -0.72 -12.30 4.32 -56.06 -0.24 -12.54 16 15 C 0.23 3.34 2.57 -70.23 -0.18 3.16 16 16 H 0.14 2.01 7.58 -51.93 -0.39 1.62 16 17 C 0.46 6.75 7.65 36.01 0.28 7.03 16 18 O -0.48 -8.98 17.08 -18.75 -0.32 -9.30 16 19 O -0.52 -4.93 8.29 -39.25 -0.33 -5.26 16 20 C 0.07 0.93 6.24 -82.26 -0.51 0.42 16 21 C -0.25 -3.06 9.87 -40.01 -0.39 -3.45 16 22 C 0.05 0.53 12.03 -17.36 -0.21 0.33 16 23 N -0.29 -3.73 12.58 30.62 0.39 -3.35 16 24 N -0.36 -4.32 4.01 -63.88 -0.26 -4.58 16 25 C 0.11 0.91 9.31 59.85 0.56 1.46 16 26 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.41 6.17 6.49 -40.82 -0.27 5.91 16 31 H 0.41 2.28 9.10 45.56 0.41 2.70 16 32 H 0.15 1.67 7.03 -52.49 -0.37 1.30 16 33 H 0.19 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.08 0.64 6.75 -51.93 -0.35 0.28 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.76 6.70 -51.93 -0.35 0.41 16 LS Contribution 308.25 15.07 4.65 4.65 Total: -1.00 -34.93 308.25 -4.46 -39.39 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -3.20 Total: 6.29 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -0.84 Total: 5.70 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.51 Total: -44.69 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.56 Total: -28.01 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.93 -4.46 -39.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210239.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.182 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds