Wall clock time and date at job start Tue Mar 31 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.46790 * 2 1 4 4 C 1.50698 * 109.47624 * 240.00205 * 2 1 3 5 5 H 1.07996 * 120.00470 * 240.00295 * 4 2 1 6 6 C 1.37878 * 119.99719 * 59.99593 * 4 2 1 7 7 N 1.31508 * 120.00516 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99842 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46941 * 60.00478 * 8 6 4 10 10 H 1.48496 * 109.47273 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47215 * 300.00582 * 8 6 4 12 12 C 1.50698 * 109.47312 * 119.99811 * 2 1 3 13 13 O 1.21285 * 120.00052 * 119.99805 * 12 2 1 14 14 N 1.34774 * 120.00175 * 300.00403 * 12 2 1 15 15 C 1.46497 * 120.00281 * 179.97438 * 14 12 2 16 16 H 1.09003 * 109.47345 * 324.99967 * 15 14 12 17 17 C 1.50700 * 109.47093 * 85.00013 * 15 14 12 18 18 O 1.20824 * 119.99764 * 26.24698 * 17 15 14 19 19 O 1.34231 * 119.99889 * 206.24291 * 17 15 14 20 20 C 1.50700 * 109.47225 * 205.00185 * 15 14 12 21 21 C 1.35318 * 126.12784 * 324.65636 * 20 15 14 22 22 C 1.39872 * 107.91866 * 180.02562 * 21 20 15 23 23 N 1.30833 * 108.20369 * 0.02562 * 22 21 20 24 24 N 1.34953 * 126.12552 * 144.71077 * 20 15 14 25 25 C 1.46497 * 126.03931 * 359.94980 * 24 20 15 26 26 H 1.09002 * 109.47222 * 60.00513 * 1 2 3 27 27 H 1.09006 * 109.46561 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47539 * 299.99580 * 1 2 3 29 29 H 0.97004 * 120.00481 * 180.02562 * 7 6 4 30 30 H 0.96999 * 119.99679 * 0.02562 * 14 12 2 31 31 H 0.96700 * 116.99749 * 180.02562 * 19 17 15 32 32 H 1.07996 * 126.03556 * 0.02862 * 21 20 15 33 33 H 1.07998 * 125.89627 * 180.02562 * 22 21 20 34 34 H 1.08991 * 109.47576 * 275.21989 * 25 24 20 35 35 H 1.09006 * 109.46524 * 35.21785 * 25 24 20 36 36 H 1.08997 * 109.47083 * 155.20928 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0325 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3216 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0078 10 1 1.8272 -0.4198 -5.2205 11 1 3.8065 -1.1208 -4.0081 12 6 2.0324 -0.7103 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4545 15 6 2.1947 -0.9408 3.6507 16 1 2.2310 -2.0136 3.4613 17 6 3.5763 -0.4434 3.9896 18 8 3.9184 0.6655 3.6535 19 8 4.4266 -1.2324 4.6650 20 6 1.2647 -0.6657 4.8042 21 6 0.6049 0.4924 5.0384 22 6 -0.1476 0.3303 6.2063 23 7 0.0536 -0.8812 6.6573 24 7 0.9415 -1.5297 5.7892 25 6 1.4322 -2.9032 5.9262 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 0.7089 1.1614 -3.4844 30 1 1.1487 0.5385 2.5435 31 1 5.3016 -0.8696 4.8597 32 1 0.6513 1.3840 4.4309 33 1 -0.7846 1.0764 6.6577 34 1 0.8142 -3.5714 5.3267 35 1 2.4649 -2.9561 5.5813 36 1 1.3829 -3.2039 6.9728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210241.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:28 Heat of formation + Delta-G solvation = -45.353951 kcal Electronic energy + Delta-G solvation = -22331.481456 eV Core-core repulsion = 18817.900025 eV Total energy + Delta-G solvation = -3513.581432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.67081 -40.20467 -38.80122 -36.19330 -34.76859 -33.82039 -33.44192 -31.19059 -29.99935 -27.49486 -26.85764 -25.16721 -23.13283 -22.03530 -21.37679 -19.98903 -19.51029 -18.18070 -17.44843 -17.08429 -16.26372 -15.73090 -15.55261 -15.33489 -15.28731 -14.45893 -14.40026 -14.03212 -13.83268 -13.21534 -13.02526 -12.84287 -12.58102 -12.50244 -12.24258 -11.59878 -11.53599 -11.04175 -10.97776 -10.84449 -10.78039 -10.72455 -10.30520 -10.00921 -9.53426 -9.04896 -8.97221 -8.84174 -8.70968 -8.38425 -6.05625 -4.09534 1.47522 2.08475 2.24954 2.58552 2.86948 3.35093 3.37855 3.42143 3.51451 3.75541 4.17045 4.40801 4.45040 4.79663 5.00998 5.05517 5.14641 5.27763 5.28959 5.46528 5.51031 5.84834 6.07131 6.40712 6.45310 6.56004 6.60543 6.71538 6.78719 6.87525 7.41806 7.47486 7.70138 7.81290 7.87781 8.04044 8.29225 8.94513 8.99583 9.55759 11.01895 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.004631 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.037486 B = 6044.252356 C = 6461.109970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.034 3.966 3 H 0.058 0.942 4 C -0.505 4.505 5 H 0.074 0.926 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.527 3.473 13 O -0.539 6.539 14 N -0.717 5.717 15 C 0.226 3.774 16 H 0.127 0.873 17 C 0.474 3.526 18 O -0.491 6.491 19 O -0.517 6.517 20 C 0.073 3.927 21 C -0.246 4.246 22 C 0.048 3.952 23 N -0.286 5.286 24 N -0.359 5.359 25 C 0.091 3.909 26 H 0.095 0.905 27 H 0.032 0.968 28 H 0.014 0.986 29 H 0.262 0.738 30 H 0.409 0.591 31 H 0.410 0.590 32 H 0.154 0.846 33 H 0.189 0.811 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 -2.327 17.282 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.013 3.987 3 H 0.076 0.924 4 C -0.543 4.543 5 H 0.092 0.908 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.317 3.683 13 O -0.413 6.413 14 N -0.374 5.374 15 C 0.115 3.885 16 H 0.144 0.856 17 C 0.312 3.688 18 O -0.375 6.375 19 O -0.329 6.329 20 C -0.055 4.055 21 C -0.276 4.276 22 C -0.137 4.137 23 N -0.108 5.108 24 N -0.142 5.142 25 C -0.050 4.050 26 H 0.114 0.886 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.246 0.754 31 H 0.269 0.731 32 H 0.172 0.828 33 H 0.205 0.795 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.382 -3.788 17.766 18.170 hybrid contribution 0.869 0.811 -1.235 1.714 sum 0.487 -2.977 16.531 16.804 Atomic orbital electron populations 1.21766 0.96163 0.99995 1.01250 1.18898 0.94371 0.97043 0.88359 0.92400 1.21063 1.31387 1.12964 0.88879 0.90802 1.24937 0.95032 0.95034 0.99099 1.69853 1.36824 1.22916 1.23768 0.86486 0.79286 0.79673 0.81572 1.20182 1.21326 1.20191 1.22342 0.77915 0.84042 0.83964 1.90552 1.37636 1.26770 1.86379 1.46216 1.54877 1.33151 1.03172 1.18226 0.84960 1.00841 0.84464 0.85565 1.23783 0.87634 0.83278 0.74108 1.90728 1.77110 1.20836 1.48875 1.84478 1.28968 1.49703 1.69711 1.20334 1.00449 0.92164 0.92539 1.21325 1.05198 0.99190 1.01886 1.23850 0.99803 0.94628 0.95408 1.77390 1.09922 1.08194 1.15287 1.48483 1.35290 1.11935 1.18508 1.22036 1.00547 0.77627 1.04810 0.88614 0.94866 0.96663 0.92801 0.75407 0.73058 0.82817 0.79455 0.90162 0.88806 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.87 37.16 0.33 -2.66 16 2 C 0.03 0.84 2.64 -92.93 -0.25 0.60 16 3 H 0.06 1.48 8.14 -51.92 -0.42 1.06 16 4 C -0.50 -14.09 8.37 -34.44 -0.29 -14.38 16 5 H 0.07 2.16 6.75 -52.49 -0.35 1.81 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -24.78 11.32 55.43 0.63 -24.16 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 C 0.53 11.71 7.11 -10.99 -0.08 11.63 16 13 O -0.54 -13.41 15.12 5.55 0.08 -13.33 16 14 N -0.72 -12.49 4.58 -56.07 -0.26 -12.75 16 15 C 0.23 3.41 2.59 -70.24 -0.18 3.23 16 16 H 0.13 1.90 7.04 -51.93 -0.37 1.53 16 17 C 0.47 7.33 7.47 36.01 0.27 7.60 16 18 O -0.49 -8.97 17.39 -18.75 -0.33 -9.30 16 19 O -0.52 -6.06 13.42 -39.26 -0.53 -6.59 16 20 C 0.07 0.98 5.96 -82.26 -0.49 0.49 16 21 C -0.25 -3.05 9.96 -40.01 -0.40 -3.45 16 22 C 0.05 0.55 12.03 -17.37 -0.21 0.34 16 23 N -0.29 -3.70 12.58 30.62 0.39 -3.32 16 24 N -0.36 -4.44 4.01 -63.89 -0.26 -4.70 16 25 C 0.09 0.80 10.96 59.85 0.66 1.45 16 26 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.01 0.27 7.56 -51.93 -0.39 -0.12 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.41 6.36 6.79 -40.82 -0.28 6.08 16 31 H 0.41 3.06 9.10 45.56 0.41 3.47 16 32 H 0.15 1.71 7.45 -52.49 -0.39 1.32 16 33 H 0.19 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.75 7.80 -51.93 -0.41 0.34 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 318.04 15.07 4.79 4.79 Total: -1.00 -34.59 318.04 -4.56 -39.15 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.33 Total: 7.21 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -0.73 Total: 6.40 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.50 Total: -44.92 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.77 Total: -29.21 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.59 -4.56 -39.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210241.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.201 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds