Wall clock time and date at job start Tue Mar 31 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47085 * 2 1 4 4 C 1.52991 * 109.47096 * 239.99684 * 2 1 3 5 5 C 1.50706 * 109.47125 * 64.99970 * 4 2 1 6 6 C 1.34678 * 126.58894 * 84.97605 * 5 4 2 7 7 N 1.34122 * 108.01752 * 180.02562 * 6 5 4 8 8 C 1.30502 * 109.25854 * 359.97438 * 7 6 5 9 9 N 1.35043 * 108.70127 * 0.02562 * 8 7 6 10 10 H 0.97000 * 126.39980 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47080 * 119.99639 * 2 1 3 12 12 O 1.21299 * 119.99847 * 93.24395 * 11 2 1 13 13 N 1.34774 * 120.00452 * 273.23847 * 11 2 1 14 14 C 1.37092 * 120.00431 * 185.04233 * 13 11 2 15 15 H 1.07997 * 119.99973 * 15.83383 * 14 13 11 16 16 C 1.38951 * 120.00180 * 195.83838 * 14 13 11 17 17 N 1.31412 * 120.00242 * 28.33513 * 16 14 13 18 18 Si 1.86806 * 119.99867 * 208.33978 * 16 14 13 19 19 H 1.48501 * 109.46881 * 94.97981 * 18 16 14 20 20 H 1.48496 * 109.47100 * 214.98054 * 18 16 14 21 21 H 1.48494 * 109.47013 * 334.98533 * 18 16 14 22 22 C 1.46499 * 119.99612 * 5.05104 * 13 11 2 23 23 C 1.50700 * 109.47640 * 86.62558 * 22 13 11 24 24 O 1.20830 * 119.99851 * 359.97438 * 23 22 13 25 25 O 1.34234 * 119.99993 * 179.97438 * 23 22 13 26 26 H 1.09004 * 109.46860 * 293.61513 * 1 2 3 27 27 H 1.08993 * 109.46955 * 53.61035 * 1 2 3 28 28 H 1.08993 * 109.47259 * 173.61351 * 1 2 3 29 29 H 1.09000 * 109.47645 * 304.99895 * 4 2 1 30 30 H 1.09006 * 109.47430 * 185.00026 * 4 2 1 31 31 H 1.07994 * 125.98859 * 0.02562 * 6 5 4 32 32 H 1.08001 * 125.65001 * 179.97438 * 8 7 6 33 33 H 0.96995 * 119.99916 * 180.02562 * 17 16 14 34 34 H 1.09006 * 109.47040 * 206.62726 * 22 13 11 35 35 H 1.09007 * 109.47424 * 326.62327 * 22 13 11 36 36 H 0.96699 * 116.99467 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6413 0.0570 -2.4766 6 6 2.3070 1.0932 -3.0215 7 7 1.6235 1.5045 -4.0996 8 6 0.5598 0.7623 -4.2439 9 7 0.5328 -0.1533 -3.2517 10 1 -0.1454 -0.8329 -3.1138 11 6 2.0323 -0.7103 1.2305 12 8 2.2905 -1.8946 1.1842 13 7 2.1948 -0.0298 2.3824 14 6 2.7486 -0.6497 3.4726 15 1 3.2835 -1.5800 3.3510 16 6 2.6215 -0.0812 4.7341 17 7 1.5824 0.6733 5.0132 18 14 3.9280 -0.3892 6.0333 19 1 4.9117 0.7232 6.0195 20 1 3.2874 -0.4671 7.3707 21 1 4.6235 -1.6685 5.7422 22 6 1.7795 1.3724 2.4696 23 6 0.3212 1.4422 2.8432 24 8 -0.3069 0.4249 3.0183 25 8 -0.2798 2.6344 2.9815 26 1 -0.3633 0.4117 0.9417 27 1 -0.3633 0.6097 -0.8272 28 1 -0.3633 -1.0212 -0.1143 29 1 1.6054 -1.7198 -1.2951 30 1 3.1264 -0.7995 -1.2055 31 1 3.2295 1.5183 -2.6546 32 1 -0.1773 0.8641 -5.0267 33 1 1.4939 1.0704 5.8937 34 1 2.3739 1.8808 3.2288 35 1 1.9310 1.8569 1.5049 36 1 -1.2163 2.6285 3.2225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592907516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:44 Heat of formation + Delta-G solvation = -58.247942 kcal Electronic energy + Delta-G solvation = -22812.671649 eV Core-core repulsion = 19298.531092 eV Total energy + Delta-G solvation = -3514.140557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.97471 -39.67740 -38.33539 -35.42453 -34.78620 -34.17519 -32.30755 -31.77628 -29.76505 -27.73180 -26.17291 -25.29025 -22.63689 -21.46331 -21.17357 -20.58077 -18.60999 -17.75202 -17.19169 -16.95689 -16.34657 -15.65832 -15.26145 -14.72162 -14.66805 -14.43541 -14.07218 -13.83529 -13.40483 -13.22936 -13.08610 -12.48643 -12.24953 -11.95088 -11.87919 -11.65677 -11.39196 -11.08780 -11.00977 -10.73041 -10.44045 -10.29333 -10.15655 -9.92720 -9.88441 -9.65244 -9.07928 -8.54535 -8.21160 -7.96751 -6.51594 -3.90531 2.12167 3.09895 3.19000 3.22603 3.23472 3.28447 3.40027 3.56565 4.02778 4.21045 4.59506 4.75027 4.94815 5.07216 5.12356 5.36007 5.42862 5.54999 5.64541 5.69561 5.85714 5.97540 6.07764 6.10582 6.32198 6.35295 6.44360 6.46382 6.61460 6.82677 7.41857 7.44720 7.51729 7.93513 8.11462 8.31710 8.98986 9.04321 9.26586 9.79830 10.56859 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.005248 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.662452 B = 5334.428921 C = 5906.672555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.026 4.026 5 C -0.002 4.002 6 C -0.032 4.032 7 N -0.495 5.495 8 C 0.171 3.829 9 N -0.566 5.566 10 H 0.418 0.582 11 C 0.463 3.537 12 O -0.575 6.575 13 N -0.428 5.428 14 C -0.313 4.313 15 H 0.109 0.891 16 C 0.033 3.967 17 N -0.868 5.868 18 Si 0.922 3.078 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.142 3.858 23 C 0.488 3.512 24 O -0.492 6.492 25 O -0.536 6.536 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.168 0.832 32 H 0.204 0.796 33 H 0.270 0.730 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.102 4.261 -10.566 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.102 0.898 4 C -0.065 4.065 5 C -0.118 4.118 6 C -0.180 4.180 7 N -0.214 5.214 8 C -0.113 4.113 9 N -0.170 5.170 10 H 0.256 0.744 11 C 0.252 3.748 12 O -0.459 6.459 13 N -0.147 5.147 14 C -0.439 4.439 15 H 0.126 0.874 16 C -0.171 4.171 17 N -0.506 5.506 18 Si 0.749 3.251 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.192 1.192 22 C 0.015 3.985 23 C 0.328 3.672 24 O -0.377 6.377 25 O -0.347 6.347 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.186 0.814 32 H 0.220 0.780 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.514 4.149 -10.988 12.011 hybrid contribution -0.937 -0.914 1.679 2.129 sum -3.452 3.235 -9.309 10.442 Atomic orbital electron populations 1.21878 0.93759 1.02037 1.02608 1.21233 0.97221 1.00209 0.93690 0.89808 1.19898 1.02147 0.97391 0.87066 1.21470 0.90489 1.02141 0.97736 1.22092 1.02312 0.97946 0.95632 1.70238 1.05624 1.26743 1.18810 1.24861 1.00114 0.90827 0.95481 1.43341 1.21360 1.28979 1.23281 0.74443 1.19902 0.82846 0.87148 0.84877 1.90526 1.54867 1.15179 1.85278 1.43478 1.52673 1.07884 1.10661 1.19689 1.30106 1.09544 0.84605 0.87364 1.25213 0.96375 0.97618 0.97920 1.69919 1.24040 1.33882 1.22764 0.85967 0.80754 0.79109 0.79288 1.20250 1.21173 1.19230 1.20634 0.89401 0.86425 1.02030 1.23709 0.90618 0.80217 0.72648 1.90611 1.65646 1.36032 1.45394 1.84525 1.30208 1.36572 1.83437 0.91076 0.93163 0.92557 0.90275 0.89095 0.81434 0.77992 0.91971 0.86397 0.89812 0.75125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.85 37.16 0.33 -2.09 16 2 C -0.10 -1.76 2.02 -91.77 -0.19 -1.95 16 3 H 0.08 1.34 6.13 -51.93 -0.32 1.02 16 4 C -0.03 -0.39 4.71 -27.88 -0.13 -0.52 16 5 C 0.00 -0.03 5.61 -81.60 -0.46 -0.49 16 6 C -0.03 -0.45 11.79 -17.81 -0.21 -0.66 16 7 N -0.50 -7.04 11.25 -14.67 -0.16 -7.20 16 8 C 0.17 1.87 13.04 -90.37 -1.18 0.69 16 9 N -0.57 -6.10 6.00 -10.29 -0.06 -6.16 16 10 H 0.42 3.42 8.96 -40.82 -0.37 3.05 16 11 C 0.46 10.70 6.61 -10.99 -0.07 10.62 16 12 O -0.58 -15.24 15.89 5.54 0.09 -15.15 16 13 N -0.43 -10.37 2.14 -116.09 -0.25 -10.62 16 14 C -0.31 -8.38 9.27 -14.94 -0.14 -8.52 16 15 H 0.11 3.07 7.46 -52.49 -0.39 2.68 16 16 C 0.03 0.84 4.69 -17.47 -0.08 0.76 16 17 N -0.87 -22.48 9.35 55.50 0.52 -21.96 16 18 Si 0.92 20.01 29.64 -169.99 -5.04 14.98 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 C 0.14 2.97 5.03 -5.19 -0.03 2.94 16 23 C 0.49 10.43 4.79 36.01 0.17 10.60 16 24 O -0.49 -12.30 14.90 -18.75 -0.28 -12.58 16 25 O -0.54 -9.36 13.42 -39.27 -0.53 -9.89 16 26 H 0.07 1.35 4.13 -51.93 -0.21 1.13 16 27 H 0.05 0.71 7.45 -51.93 -0.39 0.33 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.23 8.03 -51.93 -0.42 0.82 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.20 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.12 2.55 6.70 -51.93 -0.35 2.20 16 35 H 0.08 1.43 5.91 -51.93 -0.31 1.12 16 36 H 0.39 5.27 9.10 45.56 0.41 5.68 16 LS Contribution 304.93 15.07 4.60 4.60 Total: -1.00 -34.62 304.93 -6.26 -40.88 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -3.16 Total: 11.75 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: -1.98 Total: 11.37 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.04 Total: -45.94 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.72 Total: -37.62 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.04 Total: 14.98 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.62 -6.26 -40.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592907516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.370 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds