Wall clock time and date at job start Tue Mar 31 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47046 * 2 1 4 4 C 1.52997 * 109.46959 * 120.00121 * 2 1 3 5 5 C 1.50704 * 109.47432 * 294.99758 * 4 2 1 6 6 C 1.34666 * 126.58987 * 85.02320 * 5 4 2 7 7 N 1.34128 * 108.02206 * 179.97438 * 6 5 4 8 8 C 1.30502 * 109.25240 * 359.97438 * 7 6 5 9 9 N 1.35043 * 108.70175 * 359.76984 * 8 7 6 10 10 H 0.96999 * 126.40284 * 180.26261 * 9 8 7 11 11 C 1.50701 * 109.46832 * 239.99602 * 2 1 3 12 12 O 1.21280 * 120.00374 * 275.17932 * 11 2 1 13 13 N 1.34778 * 119.99255 * 95.45548 * 11 2 1 14 14 C 1.37094 * 120.00386 * 2.72843 * 13 11 2 15 15 H 1.07996 * 120.00517 * 339.36541 * 14 13 11 16 16 C 1.38952 * 120.00180 * 159.36266 * 14 13 11 17 17 N 1.31418 * 120.00010 * 343.68735 * 16 14 13 18 18 Si 1.86795 * 120.00422 * 163.68297 * 16 14 13 19 19 H 1.48500 * 109.46907 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47316 * 120.00027 * 18 16 14 21 21 H 1.48495 * 109.47388 * 240.00402 * 18 16 14 22 22 C 1.46502 * 119.99636 * 182.72917 * 13 11 2 23 23 C 1.50699 * 109.47410 * 272.41023 * 22 13 11 24 24 O 1.20824 * 119.99612 * 359.97438 * 23 22 13 25 25 O 1.34228 * 119.99871 * 180.02562 * 23 22 13 26 26 H 1.09000 * 109.47203 * 67.34583 * 1 2 3 27 27 H 1.09001 * 109.47388 * 187.35583 * 1 2 3 28 28 H 1.09006 * 109.46749 * 307.35274 * 1 2 3 29 29 H 1.09004 * 109.47338 * 54.99823 * 4 2 1 30 30 H 1.08997 * 109.47443 * 174.99618 * 4 2 1 31 31 H 1.08005 * 125.99192 * 359.96397 * 6 5 4 32 32 H 1.08005 * 125.65090 * 180.02562 * 8 7 6 33 33 H 0.96992 * 120.00106 * 180.02562 * 17 16 14 34 34 H 1.09006 * 109.47058 * 32.41234 * 22 13 11 35 35 H 1.09003 * 109.47203 * 152.40506 * 22 13 11 36 36 H 0.96701 * 116.99416 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 6 0.4667 -0.0213 3.1304 7 7 0.5107 0.8296 4.1663 8 6 1.6684 1.4318 4.1795 9 7 2.4062 0.9745 3.1450 10 1 3.3088 1.2469 2.9170 11 6 2.0323 -0.7105 -1.2304 12 8 2.1450 -1.9181 -1.2299 13 7 2.3615 -0.0034 -2.3296 14 6 2.2928 1.3657 -2.3100 15 1 1.6808 1.8653 -1.5736 16 6 3.0107 2.1108 -3.2375 17 7 3.9881 1.5513 -3.9148 18 14 2.5865 3.9075 -3.5219 19 1 1.4556 4.2946 -2.6407 20 1 3.7682 4.7507 -3.2090 21 1 2.1987 4.1059 -4.9415 22 6 2.7927 -0.6978 -3.5453 23 6 4.2812 -0.9273 -3.4917 24 8 4.9166 -0.5491 -2.5362 25 8 4.9010 -1.5509 -4.5059 26 1 -0.3633 0.3958 -0.9484 27 1 -0.3634 -1.0192 0.1316 28 1 -0.3633 0.6236 0.8170 29 1 1.6053 -1.7198 1.2951 30 1 3.1263 -0.7996 1.2056 31 1 -0.3653 -0.6576 2.8667 32 1 1.9856 2.1703 4.9010 33 1 4.4895 2.0714 -4.5619 34 1 2.2796 -1.6569 -3.6174 35 1 2.5499 -0.0896 -4.4167 36 1 5.8566 -1.6755 -4.4261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592907519.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:51 Heat of formation + Delta-G solvation = -64.763675 kcal Electronic energy + Delta-G solvation = -22651.816758 eV Core-core repulsion = 19137.393657 eV Total energy + Delta-G solvation = -3514.423100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -41.86279 -39.42903 -38.28672 -35.36472 -34.48591 -34.26817 -32.25958 -31.63927 -29.63227 -27.78959 -26.24567 -24.94596 -22.76895 -21.29784 -20.74533 -20.27457 -19.13609 -17.60629 -17.00833 -16.80989 -16.28596 -15.54443 -14.90322 -14.59275 -14.41717 -14.32872 -14.25966 -13.70672 -13.41013 -13.14779 -13.09418 -12.29773 -12.13698 -11.86108 -11.73450 -11.48460 -11.33546 -11.04193 -10.91137 -10.78070 -10.50787 -10.22450 -10.13563 -9.83350 -9.81047 -9.57636 -9.11282 -8.57276 -8.11342 -7.99860 -6.57547 -4.11020 2.23425 3.00662 3.12365 3.15951 3.30593 3.33287 3.59751 3.74214 3.97582 4.26303 4.61666 4.82975 4.94678 5.21335 5.34958 5.48338 5.63066 5.79532 5.82326 6.01014 6.13168 6.21824 6.27275 6.41335 6.51313 6.54178 6.62932 6.68458 6.75282 6.93118 7.26868 7.52018 7.53761 7.67684 8.15659 8.21362 8.90541 9.22660 9.31251 9.69423 10.50225 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.005972 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.758337 B = 4687.134927 C = 5556.342463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.093 0.907 4 C -0.028 4.028 5 C 0.000 4.000 6 C -0.031 4.031 7 N -0.497 5.497 8 C 0.170 3.830 9 N -0.566 5.566 10 H 0.420 0.580 11 C 0.478 3.522 12 O -0.601 6.601 13 N -0.430 5.430 14 C -0.334 4.334 15 H 0.105 0.895 16 C 0.037 3.963 17 N -0.871 5.871 18 Si 0.927 3.073 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.278 1.278 22 C 0.160 3.840 23 C 0.503 3.497 24 O -0.509 6.509 25 O -0.538 6.538 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.167 0.833 32 H 0.203 0.797 33 H 0.272 0.728 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 0.360 5.206 5.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.111 0.889 4 C -0.067 4.067 5 C -0.116 4.116 6 C -0.179 4.179 7 N -0.217 5.217 8 C -0.114 4.114 9 N -0.169 5.169 10 H 0.257 0.743 11 C 0.267 3.733 12 O -0.487 6.487 13 N -0.148 5.148 14 C -0.461 4.461 15 H 0.122 0.878 16 C -0.167 4.167 17 N -0.510 5.510 18 Si 0.753 3.247 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.204 1.204 22 C 0.034 3.966 23 C 0.343 3.657 24 O -0.394 6.394 25 O -0.349 6.349 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.185 0.815 32 H 0.220 0.780 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.133 0.867 36 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.626 0.129 5.862 6.425 hybrid contribution 1.924 1.198 -0.935 2.452 sum -0.702 1.327 4.927 5.150 Atomic orbital electron populations 1.21709 0.93590 1.01914 1.02133 1.21004 0.97062 1.01004 0.92042 0.88857 1.19935 1.01465 0.97730 0.87590 1.21459 0.93759 0.97579 0.98847 1.22045 0.97706 1.03029 0.95071 1.70232 1.19417 1.10279 1.21736 1.24838 0.89088 1.03301 0.94124 1.43340 1.16554 1.33044 1.24002 0.74266 1.20127 0.81932 0.87128 0.84081 1.90534 1.60061 1.14730 1.83341 1.43374 1.56554 1.06416 1.08471 1.19673 1.27975 0.79943 1.18523 0.87772 1.25265 0.93848 1.00461 0.97168 1.69657 1.17794 1.37864 1.25660 0.85860 0.78536 0.81688 0.78569 1.19133 1.20810 1.20379 1.20327 0.87349 0.97719 0.91199 1.23490 0.91863 0.71642 0.78679 1.90527 1.66953 1.46829 1.35107 1.84517 1.27272 1.74062 1.49063 0.92163 0.92473 0.92152 0.88808 0.91140 0.81549 0.78016 0.91707 0.90076 0.86727 0.75512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.65 37.16 0.32 -1.89 16 2 C -0.09 -1.68 2.08 -91.77 -0.19 -1.87 16 3 H 0.09 1.83 6.11 -51.93 -0.32 1.51 16 4 C -0.03 -0.47 4.82 -27.88 -0.13 -0.60 16 5 C 0.00 0.00 6.09 -81.60 -0.50 -0.50 16 6 C -0.03 -0.47 10.28 -17.81 -0.18 -0.65 16 7 N -0.50 -7.64 11.25 -14.66 -0.16 -7.80 16 8 C 0.17 2.11 13.04 -90.37 -1.18 0.93 16 9 N -0.57 -7.16 6.15 -10.30 -0.06 -7.22 16 10 H 0.42 4.32 8.96 -40.82 -0.37 3.96 16 11 C 0.48 10.99 6.57 -10.98 -0.07 10.92 16 12 O -0.60 -15.06 16.02 5.56 0.09 -14.97 16 13 N -0.43 -10.34 2.12 -116.09 -0.25 -10.59 16 14 C -0.33 -8.02 8.88 -14.93 -0.13 -8.15 16 15 H 0.10 2.37 6.16 -52.49 -0.32 2.04 16 16 C 0.04 0.89 4.99 -17.46 -0.09 0.81 16 17 N -0.87 -22.03 8.59 55.50 0.48 -21.55 16 18 Si 0.93 18.83 29.58 -169.99 -5.03 13.80 16 19 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 C 0.16 3.72 5.18 -5.19 -0.03 3.70 16 23 C 0.50 12.07 6.25 36.01 0.23 12.30 16 24 O -0.51 -13.86 16.43 -18.75 -0.31 -14.17 16 25 O -0.54 -10.72 13.42 -39.25 -0.53 -11.25 16 26 H 0.06 1.01 8.13 -51.93 -0.42 0.58 16 27 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 28 H 0.06 0.90 6.68 -51.93 -0.35 0.55 16 29 H 0.09 1.57 8.01 -51.93 -0.42 1.15 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.17 2.27 8.06 -52.48 -0.42 1.84 16 32 H 0.20 1.64 8.06 -52.48 -0.42 1.21 16 33 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.08 1.78 7.54 -51.93 -0.39 1.38 16 35 H 0.11 2.65 6.76 -51.93 -0.35 2.30 16 36 H 0.39 6.06 9.10 45.56 0.41 6.47 16 LS Contribution 309.89 15.07 4.67 4.67 Total: -1.00 -32.71 309.89 -6.40 -39.11 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -3.34 Total: 14.98 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: -1.96 Total: 14.98 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.00 Total: -47.16 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.75 Total: -40.39 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.71 -6.40 -39.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592907519.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.654 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds