Wall clock time and date at job start Tue Mar 31 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47046 * 2 1 4 4 C 1.52997 * 109.46959 * 120.00121 * 2 1 3 5 5 C 1.50704 * 109.47432 * 294.99758 * 4 2 1 6 6 C 1.34666 * 126.58987 * 85.02320 * 5 4 2 7 7 N 1.34128 * 108.02206 * 179.97438 * 6 5 4 8 8 C 1.30502 * 109.25240 * 359.97438 * 7 6 5 9 9 N 1.35043 * 108.70175 * 359.76984 * 8 7 6 10 10 H 0.96999 * 126.40284 * 180.26261 * 9 8 7 11 11 C 1.50701 * 109.46832 * 239.99602 * 2 1 3 12 12 O 1.21280 * 120.00374 * 275.17932 * 11 2 1 13 13 N 1.34778 * 119.99255 * 95.45548 * 11 2 1 14 14 C 1.37094 * 120.00386 * 2.72843 * 13 11 2 15 15 H 1.07996 * 120.00517 * 339.36541 * 14 13 11 16 16 C 1.38952 * 120.00180 * 159.36266 * 14 13 11 17 17 N 1.31418 * 120.00010 * 343.68735 * 16 14 13 18 18 Si 1.86795 * 120.00422 * 163.68297 * 16 14 13 19 19 H 1.48500 * 109.46907 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47316 * 120.00027 * 18 16 14 21 21 H 1.48495 * 109.47388 * 240.00402 * 18 16 14 22 22 C 1.46502 * 119.99636 * 182.72917 * 13 11 2 23 23 C 1.50699 * 109.47410 * 272.41023 * 22 13 11 24 24 O 1.20824 * 119.99612 * 359.97438 * 23 22 13 25 25 O 1.34228 * 119.99871 * 180.02562 * 23 22 13 26 26 H 1.09000 * 109.47203 * 67.34583 * 1 2 3 27 27 H 1.09001 * 109.47388 * 187.35583 * 1 2 3 28 28 H 1.09006 * 109.46749 * 307.35274 * 1 2 3 29 29 H 1.09004 * 109.47338 * 54.99823 * 4 2 1 30 30 H 1.08997 * 109.47443 * 174.99618 * 4 2 1 31 31 H 1.08005 * 125.99192 * 359.96397 * 6 5 4 32 32 H 1.08005 * 125.65090 * 180.02562 * 8 7 6 33 33 H 0.96992 * 120.00106 * 180.02562 * 17 16 14 34 34 H 1.09006 * 109.47058 * 32.41234 * 22 13 11 35 35 H 1.09003 * 109.47203 * 152.40506 * 22 13 11 36 36 H 0.96701 * 116.99416 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 6 0.4667 -0.0213 3.1304 7 7 0.5107 0.8296 4.1663 8 6 1.6684 1.4318 4.1795 9 7 2.4062 0.9745 3.1450 10 1 3.3088 1.2469 2.9170 11 6 2.0323 -0.7105 -1.2304 12 8 2.1450 -1.9181 -1.2299 13 7 2.3615 -0.0034 -2.3296 14 6 2.2928 1.3657 -2.3100 15 1 1.6808 1.8653 -1.5736 16 6 3.0107 2.1108 -3.2375 17 7 3.9881 1.5513 -3.9148 18 14 2.5865 3.9075 -3.5219 19 1 1.4556 4.2946 -2.6407 20 1 3.7682 4.7507 -3.2090 21 1 2.1987 4.1059 -4.9415 22 6 2.7927 -0.6978 -3.5453 23 6 4.2812 -0.9273 -3.4917 24 8 4.9166 -0.5491 -2.5362 25 8 4.9010 -1.5509 -4.5059 26 1 -0.3633 0.3958 -0.9484 27 1 -0.3634 -1.0192 0.1316 28 1 -0.3633 0.6236 0.8170 29 1 1.6053 -1.7198 1.2951 30 1 3.1263 -0.7996 1.2056 31 1 -0.3653 -0.6576 2.8667 32 1 1.9856 2.1703 4.9010 33 1 4.4895 2.0714 -4.5619 34 1 2.2796 -1.6569 -3.6174 35 1 2.5499 -0.0896 -4.4167 36 1 5.8566 -1.6755 -4.4261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592907519.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:48 Heat of formation + Delta-G solvation = -86.330504 kcal Electronic energy + Delta-G solvation = -22652.751966 eV Core-core repulsion = 19137.393657 eV Total energy + Delta-G solvation = -3515.358308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.93539 -41.24331 -40.08170 -37.11569 -36.34917 -35.79270 -33.49882 -33.32308 -30.94859 -29.50999 -27.50328 -26.77214 -24.30345 -22.52849 -22.10181 -21.61407 -20.89806 -18.88127 -18.75316 -18.51697 -17.95367 -17.36686 -16.38569 -16.24545 -16.14194 -15.72378 -15.70408 -15.16250 -14.83860 -14.59792 -14.30823 -13.83303 -13.63197 -13.44672 -13.33712 -13.24028 -12.87516 -12.69990 -12.61779 -12.16930 -12.11697 -12.02291 -11.73318 -11.46321 -11.00365 -10.93787 -10.89104 -10.34902 -9.86441 -9.24259 -8.39801 -5.98737 1.14793 1.39272 1.47550 1.59535 1.81192 1.89669 2.24173 2.27427 2.33880 2.55358 2.91488 3.16823 3.81904 3.96512 4.03129 4.15199 4.31271 4.43921 4.52656 4.62272 4.68897 4.72280 4.83444 4.88476 4.94003 5.02662 5.22316 5.29340 5.40656 5.47533 5.72072 5.83073 5.98263 6.31127 6.59703 7.06372 7.16644 7.42781 7.50755 7.87624 8.67929 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.005972 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.758337 B = 4687.134927 C = 5556.342463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.082 4.082 3 H 0.085 0.915 4 C -0.015 4.015 5 C -0.016 4.016 6 C -0.035 4.035 7 N -0.532 5.532 8 C 0.189 3.811 9 N -0.562 5.562 10 H 0.430 0.570 11 C 0.468 3.532 12 O -0.628 6.628 13 N -0.441 5.441 14 C -0.346 4.346 15 H 0.115 0.885 16 C -0.004 4.004 17 N -0.898 5.898 18 Si 0.993 3.007 19 H -0.255 1.255 20 H -0.289 1.289 21 H -0.276 1.276 22 C 0.155 3.845 23 C 0.506 3.494 24 O -0.548 6.548 25 O -0.526 6.526 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.175 0.825 32 H 0.246 0.754 33 H 0.271 0.729 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 1.680 6.059 6.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.103 4.103 3 H 0.103 0.897 4 C -0.054 4.054 5 C -0.133 4.133 6 C -0.182 4.182 7 N -0.252 5.252 8 C -0.095 4.095 9 N -0.166 5.166 10 H 0.270 0.730 11 C 0.259 3.741 12 O -0.516 6.516 13 N -0.159 5.159 14 C -0.473 4.473 15 H 0.132 0.868 16 C -0.206 4.206 17 N -0.537 5.537 18 Si 0.818 3.182 19 H -0.179 1.179 20 H -0.216 1.216 21 H -0.201 1.201 22 C 0.029 3.971 23 C 0.348 3.652 24 O -0.437 6.437 25 O -0.338 6.338 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.192 0.808 32 H 0.262 0.738 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -3.148 1.433 6.690 7.531 hybrid contribution 2.157 0.733 -1.202 2.576 sum -0.991 2.166 5.488 5.983 Atomic orbital electron populations 1.21640 0.91580 1.02665 1.02427 1.20976 0.98580 0.99947 0.90840 0.89722 1.19691 1.00254 0.97741 0.87743 1.21102 0.94413 0.98875 0.98862 1.22243 0.97914 1.03018 0.95016 1.70264 1.21111 1.11461 1.22365 1.25700 0.87921 1.02276 0.93597 1.43362 1.17020 1.32439 1.23815 0.73028 1.20905 0.81249 0.87068 0.84923 1.90500 1.61132 1.15952 1.83968 1.43610 1.56617 1.06780 1.08934 1.20013 1.28194 0.80100 1.18982 0.86786 1.26097 0.93482 1.04238 0.96774 1.69751 1.18634 1.39153 1.26180 0.84854 0.78128 0.76727 0.78536 1.17866 1.21559 1.20106 1.20393 0.87349 0.98051 0.91283 1.23585 0.92166 0.70949 0.78511 1.90502 1.67807 1.48698 1.36656 1.84448 1.29096 1.72966 1.47316 0.92774 0.91863 0.90465 0.89163 0.92710 0.80827 0.73832 0.91919 0.89277 0.86883 0.73104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 8.65 71.98 0.62 -3.32 16 2 C -0.08 -3.04 2.08 -11.54 -0.02 -3.06 16 3 H 0.08 3.28 6.11 -2.39 -0.01 3.26 16 4 C -0.02 -0.50 4.82 29.85 0.14 -0.36 16 5 C -0.02 -0.46 6.09 40.95 0.25 -0.21 16 6 C -0.03 -1.00 10.28 83.52 0.86 -0.14 16 7 N -0.53 -15.16 11.25 -200.30 -2.25 -17.41 16 8 C 0.19 4.11 13.04 180.26 2.35 6.46 16 9 N -0.56 -13.06 6.15 -186.49 -1.15 -14.20 16 10 H 0.43 8.04 8.96 -92.71 -0.83 7.21 16 11 C 0.47 21.70 6.57 87.66 0.58 22.27 16 12 O -0.63 -31.90 16.02 -3.03 -0.05 -31.95 16 13 N -0.44 -21.38 2.12 -639.60 -1.36 -22.74 16 14 C -0.35 -16.53 8.88 84.04 0.75 -15.78 16 15 H 0.11 5.09 6.16 -2.91 -0.02 5.07 16 16 C 0.00 -0.21 4.99 84.93 0.42 0.21 16 17 N -0.90 -45.43 8.59 21.66 0.19 -45.25 16 18 Si 0.99 37.96 29.58 68.60 2.03 39.99 16 19 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 20 H -0.29 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.28 -10.34 7.11 99.48 0.71 -9.64 16 22 C 0.16 7.30 5.18 85.63 0.44 7.74 16 23 C 0.51 24.42 6.25 71.24 0.45 24.86 16 24 O -0.55 -30.24 16.43 21.97 0.36 -29.88 16 25 O -0.53 -20.63 13.42 -51.39 -0.69 -21.32 16 26 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 27 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 28 H 0.08 2.17 6.68 -2.38 -0.02 2.15 16 29 H 0.09 3.02 8.01 -2.38 -0.02 3.00 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.17 4.49 8.06 -2.91 -0.02 4.47 16 32 H 0.25 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 34 H 0.09 3.95 7.54 -2.38 -0.02 3.94 16 35 H 0.11 5.28 6.76 -2.39 -0.02 5.27 16 36 H 0.41 12.35 9.10 -74.06 -0.67 11.67 16 Total: -1.00 -69.53 309.89 3.55 -65.98 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.36 Total: 38.12 kcal Atomic # 6 Polarization: 31.84 SS G_CDS: 6.84 Total: 38.68 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -4.57 Total: -99.60 kcal Atomic # 8 Polarization: -82.78 SS G_CDS: -0.38 Total: -83.16 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -69.53 3.55 -65.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592907519.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.354 kcal (2) G-P(sol) polarization free energy of solvation -69.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds