Wall clock time and date at job start Tue Mar 31 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46848 * 2 1 4 4 C 1.50693 * 109.47157 * 119.99813 * 2 1 3 5 5 C 1.38248 * 119.97311 * 53.98522 * 4 2 1 6 6 C 1.38194 * 120.02397 * 180.02562 * 5 4 2 7 7 C 1.38463 * 119.97571 * 359.97438 * 6 5 4 8 8 F 1.35103 * 120.02206 * 179.97438 * 7 6 5 9 9 C 1.38455 * 119.94880 * 0.25591 * 7 6 5 10 10 C 1.38200 * 119.97182 * 359.51481 * 9 7 6 11 11 N 1.46504 * 109.47352 * 240.00237 * 2 1 3 12 12 C 1.36939 * 119.99509 * 305.72127 * 11 2 1 13 13 H 1.08001 * 119.99984 * 316.05317 * 12 11 2 14 14 C 1.38809 * 119.99828 * 136.05832 * 12 11 2 15 15 N 1.31616 * 119.99905 * 163.16889 * 14 12 11 16 16 Si 1.86795 * 120.00150 * 343.16924 * 14 12 11 17 17 H 1.48493 * 109.47410 * 94.69357 * 16 14 12 18 18 H 1.48506 * 109.47237 * 214.69588 * 16 14 12 19 19 H 1.48502 * 109.47204 * 334.69150 * 16 14 12 20 20 C 1.46495 * 120.00173 * 125.72024 * 11 2 1 21 21 C 1.52997 * 109.47238 * 84.39739 * 20 11 2 22 22 C 1.50698 * 109.47207 * 180.02562 * 21 20 11 23 23 O 1.20824 * 119.99959 * 359.97438 * 22 21 20 24 24 O 1.34234 * 119.99631 * 180.02562 * 22 21 20 25 25 H 1.09007 * 109.46707 * 59.99769 * 1 2 3 26 26 H 1.08994 * 109.47328 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46986 * 300.00378 * 1 2 3 28 28 H 1.07992 * 119.98729 * 0.02562 * 5 4 2 29 29 H 1.08004 * 120.01435 * 180.02562 * 6 5 4 30 30 H 1.08000 * 120.01115 * 179.73859 * 9 7 6 31 31 H 1.08001 * 119.98517 * 180.25145 * 10 9 7 32 32 H 0.97001 * 119.99796 * 180.02562 * 15 14 12 33 33 H 1.08998 * 109.46760 * 204.39590 * 20 11 2 34 34 H 1.08996 * 109.47222 * 324.39495 * 20 11 2 35 35 H 1.09004 * 109.47301 * 300.00010 * 21 20 11 36 36 H 1.09001 * 109.47418 * 59.99320 * 21 20 11 37 37 H 0.96703 * 116.99342 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.5987 -1.9922 1.5133 6 6 2.0582 -2.6444 2.6417 7 6 2.9538 -2.0137 3.4888 8 9 3.4033 -2.6503 4.5924 9 6 3.3837 -0.7282 3.2069 10 6 2.9264 -0.0797 2.0754 11 7 2.0184 -0.6906 -1.1962 12 6 1.5938 -1.9626 -1.4737 13 1 1.5435 -2.6991 -0.6854 14 6 1.2282 -2.3053 -2.7682 15 7 1.1413 -3.5723 -3.1138 16 14 0.8597 -0.9684 -4.0196 17 1 2.0822 -0.6819 -4.8125 18 1 -0.2234 -1.4249 -4.9273 19 1 0.4272 0.2646 -3.3140 20 6 2.9609 -0.0204 -2.0954 21 6 4.3860 -0.2048 -1.5701 22 6 5.3555 0.4852 -2.4948 23 8 4.9484 1.0645 -3.4738 24 8 6.6714 0.4552 -2.2312 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.9005 -2.4840 0.8523 29 1 1.7197 -3.6460 2.8624 30 1 4.0789 -0.2337 3.8692 31 1 3.2648 0.9216 1.8532 32 1 0.8861 -3.8117 -4.0185 33 1 2.8824 -0.4536 -3.0925 34 1 2.7255 1.0429 -2.1417 35 1 4.4646 0.2284 -0.5729 36 1 4.6215 -1.2681 -1.5237 37 1 7.2541 0.9123 -2.8530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593698286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:47 Heat of formation + Delta-G solvation = -93.685643 kcal Electronic energy + Delta-G solvation = -22401.002072 eV Core-core repulsion = 18865.404859 eV Total energy + Delta-G solvation = -3535.597213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.58027 -39.92892 -39.02938 -36.46957 -35.76767 -32.57547 -31.97050 -30.75622 -29.48152 -28.06808 -25.02305 -23.85037 -22.57809 -22.01493 -20.65096 -19.63360 -17.86579 -17.49411 -16.63327 -16.19255 -15.94955 -15.84555 -15.34641 -15.25692 -14.66246 -14.27204 -13.81517 -13.36437 -13.22005 -13.00207 -12.90403 -12.54105 -12.42113 -12.08486 -11.82093 -11.73156 -11.31404 -11.18203 -11.14470 -10.81148 -10.76235 -10.38356 -10.25500 -10.13828 -9.86106 -9.62323 -8.68290 -8.64442 -8.10553 -6.90694 -6.08585 -3.64978 1.56369 1.65759 2.53858 3.32015 3.38799 3.45537 3.49643 4.00414 4.45253 4.61722 4.89623 5.11106 5.18630 5.21893 5.36173 5.50016 5.60349 5.65269 5.74851 5.87925 5.91353 6.11659 6.15326 6.29217 6.34246 6.44244 6.47761 6.49733 6.62651 6.65910 6.74847 6.81213 6.96956 7.13526 7.33013 7.96803 8.18146 8.31638 8.83440 9.57569 9.97682 11.03813 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.007096 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.128098 B = 3944.707687 C = 5165.734660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.203 3.797 3 H 0.062 0.938 4 C -0.081 4.081 5 C -0.061 4.061 6 C -0.158 4.158 7 C 0.078 3.922 8 F -0.151 7.151 9 C -0.162 4.162 10 C -0.096 4.096 11 N -0.591 5.591 12 C -0.283 4.283 13 H 0.089 0.911 14 C 0.047 3.953 15 N -0.896 5.896 16 Si 0.875 3.125 17 H -0.282 1.282 18 H -0.301 1.301 19 H -0.264 1.264 20 C 0.148 3.852 21 C -0.131 4.131 22 C 0.478 3.522 23 O -0.523 6.523 24 O -0.524 6.524 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.149 0.851 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.265 0.735 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 7.328 8.514 12.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.097 3.903 3 H 0.080 0.920 4 C -0.084 4.084 5 C -0.079 4.079 6 C -0.177 4.177 7 C 0.059 3.941 8 F -0.130 7.130 9 C -0.181 4.181 10 C -0.115 4.115 11 N -0.312 5.312 12 C -0.411 4.411 13 H 0.106 0.894 14 C -0.155 4.155 15 N -0.535 5.535 16 Si 0.704 3.296 17 H -0.209 1.209 18 H -0.229 1.229 19 H -0.189 1.189 20 C 0.022 3.978 21 C -0.172 4.172 22 C 0.321 3.679 23 O -0.411 6.411 24 O -0.335 6.335 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.166 0.834 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 4.145 7.122 8.409 11.774 hybrid contribution 0.534 0.679 -1.047 1.357 sum 4.679 7.801 7.363 11.703 Atomic orbital electron populations 1.22083 0.95987 1.02897 0.99847 1.19416 0.93315 0.93192 0.84366 0.92015 1.20781 0.95947 0.95266 0.96365 1.21355 0.98521 0.93947 0.94108 1.21193 0.99354 1.01084 0.96076 1.17709 0.98770 0.92176 0.85416 1.91442 1.88149 1.82045 1.51366 1.20948 1.03268 0.94043 0.99839 1.20869 0.97108 0.99745 0.93752 1.44187 1.46998 1.15533 1.24433 1.18828 1.41074 0.85646 0.95526 0.89380 1.25606 0.96470 0.95419 0.98023 1.69810 1.48363 1.15996 1.19374 0.86930 0.77688 0.83419 0.81528 1.20940 1.22887 1.18868 1.21135 0.85447 0.96428 0.94766 1.22326 0.94411 1.02419 0.98022 1.24178 0.81405 0.77114 0.85229 1.90689 1.79035 1.42207 1.29177 1.84628 1.19797 1.72811 1.56250 0.92848 0.91218 0.93957 0.83363 0.85449 0.85752 0.85895 0.92503 0.91294 0.93475 0.88641 0.87201 0.74240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.81 37.16 0.33 -2.20 16 2 C 0.20 3.52 3.07 -69.08 -0.21 3.31 16 3 H 0.06 0.96 7.58 -51.93 -0.39 0.56 16 4 C -0.08 -1.32 4.98 -104.62 -0.52 -1.84 16 5 C -0.06 -1.04 7.85 -39.59 -0.31 -1.35 16 6 C -0.16 -2.51 10.03 -39.51 -0.40 -2.90 16 7 C 0.08 1.21 7.30 -39.42 -0.29 0.92 16 8 F -0.15 -2.34 17.27 2.25 0.04 -2.30 16 9 C -0.16 -2.27 10.03 -39.52 -0.40 -2.67 16 10 C -0.10 -1.36 9.67 -39.59 -0.38 -1.74 16 11 N -0.59 -12.24 1.91 -166.99 -0.32 -12.56 16 12 C -0.28 -6.89 8.08 -15.06 -0.12 -7.01 16 13 H 0.09 2.26 5.14 -52.49 -0.27 1.99 16 14 C 0.05 1.25 5.32 -17.43 -0.09 1.16 16 15 N -0.90 -25.58 13.97 55.49 0.78 -24.81 16 16 Si 0.87 21.41 25.01 -169.99 -4.25 17.16 16 17 H -0.28 -7.09 6.76 56.52 0.38 -6.70 16 18 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 19 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 20 C 0.15 3.00 3.49 -4.05 -0.01 2.98 16 21 C -0.13 -2.25 6.13 -27.89 -0.17 -2.42 16 22 C 0.48 7.93 8.33 36.00 0.30 8.23 16 23 O -0.52 -10.24 16.74 -18.75 -0.31 -10.56 16 24 O -0.52 -6.88 13.42 -39.27 -0.53 -7.41 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.07 1.28 6.48 -51.93 -0.34 0.94 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.15 2.76 5.18 -52.49 -0.27 2.48 16 29 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.45 7.95 -52.49 -0.42 1.04 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 33 H 0.07 1.60 3.98 -51.93 -0.21 1.40 16 34 H 0.05 0.90 7.95 -51.93 -0.41 0.49 16 35 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 37 H 0.40 3.41 9.10 45.56 0.41 3.82 16 LS Contribution 312.75 15.07 4.71 4.71 Total: -1.00 -29.83 312.75 -5.75 -35.57 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -3.59 Total: 5.73 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.28 Total: -5.54 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.46 Total: -37.37 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.84 Total: -17.97 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.25 Total: 17.16 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.83 -5.75 -35.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593698286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.111 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds