Wall clock time and date at job start Tue Mar 31 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47270 * 2 1 4 4 H 1.09003 * 109.47147 * 306.03591 * 3 2 1 5 5 C 1.50702 * 109.47226 * 186.04225 * 3 2 1 6 6 H 1.08002 * 119.99992 * 244.63322 * 5 3 2 7 7 C 1.37878 * 119.99841 * 64.62866 * 5 3 2 8 8 N 1.31520 * 119.99764 * 192.57383 * 7 5 3 9 9 Si 1.86799 * 120.00169 * 12.57719 * 7 5 3 10 10 H 1.48505 * 109.46764 * 91.85726 * 9 7 5 11 11 H 1.48506 * 109.46952 * 211.85385 * 9 7 5 12 12 H 1.48498 * 109.47253 * 331.85547 * 9 7 5 13 13 N 1.46897 * 109.47392 * 66.04111 * 3 2 1 14 14 C 1.46904 * 110.99915 * 267.15754 * 13 3 2 15 15 H 1.08998 * 109.47109 * 37.96970 * 14 13 3 16 16 C 1.50702 * 109.46722 * 277.97107 * 14 13 3 17 17 O 1.20820 * 119.99996 * 0.02562 * 16 14 13 18 18 O 1.34225 * 119.99660 * 180.02562 * 16 14 13 19 19 C 1.50700 * 109.46995 * 157.97330 * 14 13 3 20 20 C 1.38245 * 119.97636 * 39.72470 * 19 14 13 21 21 C 1.38204 * 120.02164 * 179.72873 * 20 19 14 22 22 C 1.38452 * 119.97511 * 0.52153 * 21 20 19 23 23 F 1.35101 * 120.02503 * 179.72597 * 22 21 20 24 24 C 1.38457 * 119.94933 * 359.75232 * 22 21 20 25 25 C 1.38196 * 119.97597 * 359.97438 * 24 22 21 26 26 H 1.09003 * 109.47236 * 62.90833 * 1 2 3 27 27 H 1.08996 * 109.47680 * 182.91204 * 1 2 3 28 28 H 1.09008 * 109.47051 * 302.90924 * 1 2 3 29 29 H 1.09001 * 109.46843 * 239.99692 * 2 1 3 30 30 H 1.08996 * 109.47165 * 120.00168 * 2 1 3 31 31 H 0.96998 * 120.00170 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00072 * 143.19762 * 13 3 2 33 33 H 0.96704 * 117.00338 * 179.97438 * 18 16 14 34 34 H 1.07998 * 119.98714 * 359.97438 * 20 19 14 35 35 H 1.07998 * 120.00626 * 180.24696 * 21 20 19 36 36 H 1.08007 * 120.01504 * 179.97438 * 24 22 21 37 37 H 1.08007 * 119.98856 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5911 1.9866 -0.8310 5 6 3.5396 1.4451 -0.1496 6 1 4.1615 1.8168 0.6514 7 6 4.1176 0.9728 -1.3088 8 7 5.4116 0.7420 -1.3517 9 14 3.0627 0.6609 -2.8186 10 1 3.0404 1.8794 -3.6672 11 1 3.6302 -0.4717 -3.5935 12 1 1.6790 0.3270 -2.3953 13 7 1.6730 2.0917 1.2656 14 6 0.3914 2.7990 1.1422 15 1 -0.2861 2.2169 0.5176 16 6 0.6212 4.1485 0.5120 17 8 1.7378 4.4861 0.1975 18 8 -0.4147 4.9753 0.3001 19 6 -0.2161 2.9799 2.5094 20 6 0.5892 3.3015 3.5861 21 6 0.0322 3.4732 4.8392 22 6 -1.3312 3.3123 5.0182 23 9 -1.8760 3.4744 6.2438 24 6 -2.1360 2.9846 3.9402 25 6 -1.5777 2.8190 2.6869 26 1 -0.3634 0.4680 -0.9149 27 1 -0.3634 -1.0263 0.0522 28 1 -0.3633 0.5584 0.8628 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.8183 0.4094 -2.1671 32 1 2.4022 2.7159 1.5765 33 1 -0.2180 5.8304 -0.1064 34 1 1.6533 3.4226 3.4471 35 1 0.6610 3.7283 5.6794 36 1 -3.1997 2.8584 4.0787 37 1 -2.2053 2.5638 1.8458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030657.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:10 Heat of formation + Delta-G solvation = -103.773227 kcal Electronic energy + Delta-G solvation = -22407.223929 eV Core-core repulsion = 18871.189286 eV Total energy + Delta-G solvation = -3536.034643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.92603 -40.47265 -38.85782 -36.80377 -35.66145 -33.15057 -31.82732 -31.20945 -30.11742 -27.70943 -25.54404 -23.09802 -22.69510 -22.41307 -20.53157 -19.80795 -17.95769 -17.71662 -17.26167 -16.63877 -16.34893 -15.85489 -15.60746 -15.09542 -14.80046 -14.26401 -13.92355 -13.62160 -13.55250 -13.29718 -12.89868 -12.80263 -12.34808 -12.28814 -11.99413 -11.91388 -11.62828 -11.27942 -11.03398 -10.86663 -10.79244 -10.45344 -10.30452 -9.95822 -9.40490 -9.16292 -9.11220 -8.58463 -8.52902 -7.93781 -6.13211 -4.09549 1.07068 1.23154 2.43689 3.20470 3.25116 3.33520 3.35911 3.63756 4.22262 4.37838 4.57326 4.71228 4.84460 4.89784 5.19155 5.25710 5.26835 5.48110 5.56319 5.86915 5.91458 5.92226 5.93468 6.08168 6.10115 6.21477 6.48014 6.51289 6.60865 6.67501 6.83437 6.85277 6.88419 7.33306 7.50340 7.69944 8.05339 8.12561 8.50571 8.93076 9.50284 10.99863 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.005056 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.346613 B = 5536.917778 C = 5689.838470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 C 0.192 3.808 4 H 0.003 0.997 5 C -0.520 4.520 6 H 0.078 0.922 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.860 3.140 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.249 1.249 13 N -0.641 5.641 14 C 0.127 3.873 15 H 0.128 0.872 16 C 0.442 3.558 17 O -0.491 6.491 18 O -0.521 6.521 19 C -0.072 4.072 20 C -0.063 4.063 21 C -0.154 4.154 22 C 0.094 3.906 23 F -0.144 7.144 24 C -0.156 4.156 25 C -0.073 4.073 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.264 0.736 32 H 0.353 0.647 33 H 0.401 0.599 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.618 5.236 7.641 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.153 4.153 3 C 0.083 3.917 4 H 0.020 0.980 5 C -0.558 4.558 6 H 0.096 0.904 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.687 3.313 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.173 1.173 13 N -0.273 5.273 14 C 0.014 3.986 15 H 0.145 0.855 16 C 0.281 3.719 17 O -0.376 6.376 18 O -0.332 6.332 19 C -0.073 4.073 20 C -0.081 4.081 21 C -0.173 4.173 22 C 0.074 3.926 23 F -0.123 7.123 24 C -0.174 4.174 25 C -0.091 4.091 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.175 0.825 33 H 0.258 0.742 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.488 4.309 7.924 17.923 hybrid contribution -0.029 1.184 -1.583 1.978 sum -15.517 5.493 6.341 17.639 Atomic orbital electron populations 1.22044 0.98874 1.00408 1.00343 1.21961 0.92557 0.99183 1.01620 1.19534 0.96633 0.90520 0.84993 0.97982 1.20986 0.88748 1.42915 1.03173 0.90359 1.24849 0.94755 0.94357 0.98479 1.69940 1.10718 1.44358 1.27814 0.87288 0.82352 0.77987 0.83640 1.20847 1.21232 1.17271 1.61082 1.02333 1.31301 1.32613 1.20736 0.97627 0.87097 0.93134 0.85463 1.25193 0.82696 0.87922 0.76119 1.90817 1.24833 1.74866 1.47072 1.84597 1.41361 1.31373 1.75890 1.19513 0.93361 1.00339 0.94130 1.20920 1.00571 0.95651 0.91001 1.21114 0.93206 1.04041 0.98925 1.17737 0.92043 1.02620 0.80167 1.91481 1.86311 1.93243 1.41262 1.21030 1.00328 1.03980 0.92107 1.20847 0.94058 0.97626 0.96612 0.94238 0.93931 0.92399 0.92440 0.91737 0.92613 0.82452 0.74158 0.84575 0.84742 0.84808 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.72 37.16 0.32 -2.33 16 2 C -0.11 -2.38 4.82 -26.73 -0.13 -2.51 16 3 C 0.19 4.30 1.34 -68.87 -0.09 4.21 16 4 H 0.00 0.06 6.22 -51.93 -0.32 -0.26 16 5 C -0.52 -14.22 9.02 -34.44 -0.31 -14.53 16 6 H 0.08 2.33 7.79 -52.49 -0.41 1.92 16 7 C 0.08 2.22 5.36 -17.82 -0.10 2.13 16 8 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 9 Si 0.86 20.93 25.75 -169.99 -4.38 16.55 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.25 -5.56 5.32 56.52 0.30 -5.26 16 13 N -0.64 -12.18 5.30 -103.39 -0.55 -12.73 16 14 C 0.13 2.00 1.69 -70.01 -0.12 1.88 16 15 H 0.13 1.91 5.06 -51.93 -0.26 1.65 16 16 C 0.44 7.27 7.23 36.01 0.26 7.53 16 17 O -0.49 -9.99 16.32 -18.75 -0.31 -10.29 16 18 O -0.52 -6.62 13.34 -39.24 -0.52 -7.14 16 19 C -0.07 -0.98 4.88 -104.62 -0.51 -1.49 16 20 C -0.06 -0.83 9.32 -39.59 -0.37 -1.20 16 21 C -0.15 -1.84 10.03 -39.51 -0.40 -2.24 16 22 C 0.09 1.12 7.30 -39.42 -0.29 0.83 16 23 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 24 C -0.16 -1.69 10.03 -39.52 -0.40 -2.09 16 25 C -0.07 -0.83 9.67 -39.59 -0.38 -1.22 16 26 H 0.04 0.64 8.13 -51.93 -0.42 0.21 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.88 5.71 -51.92 -0.30 0.58 16 29 H 0.06 1.27 4.68 -51.93 -0.24 1.03 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.35 7.11 6.40 -39.29 -0.25 6.86 16 33 H 0.40 3.50 9.10 45.56 0.41 3.92 16 34 H 0.14 1.82 7.14 -52.49 -0.37 1.44 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.13 1.26 8.04 -52.48 -0.42 0.83 16 LS Contribution 309.84 15.07 4.67 4.67 Total: -1.00 -31.74 309.84 -6.29 -38.03 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -3.52 Total: 9.77 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -2.50 Total: -11.02 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.23 Total: -38.84 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.83 Total: -17.43 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.38 Total: 16.55 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.74 -6.29 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030657.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.743 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds