Wall clock time and date at job start Tue Mar 31 2020 05:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 H 1.08995 * 109.47193 * 305.00125 * 3 2 1 5 5 N 1.46499 * 109.46729 * 64.99964 * 3 2 1 6 6 C 1.34776 * 120.00181 * 274.99963 * 5 3 2 7 7 O 1.21680 * 119.99910 * 0.02562 * 6 5 3 8 8 C 1.46372 * 119.99813 * 180.02562 * 6 5 3 9 9 H 1.07998 * 120.00350 * 359.97438 * 8 6 5 10 10 C 1.40056 * 119.99920 * 180.02562 * 8 6 5 11 11 N 1.30669 * 119.99525 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99947 * 179.97438 * 10 8 6 13 13 H 1.48490 * 109.47238 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.46927 * 120.00111 * 12 10 8 15 15 H 1.48501 * 109.46849 * 239.99370 * 12 10 8 16 16 C 1.53002 * 109.47079 * 185.00066 * 3 2 1 17 17 H 1.08993 * 109.47119 * 65.00185 * 16 3 2 18 18 O 1.42897 * 109.47126 * 305.00105 * 16 3 2 19 19 C 1.50707 * 109.46756 * 185.00498 * 16 3 2 20 20 C 1.38216 * 120.01546 * 94.99997 * 19 16 3 21 21 C 1.38217 * 120.02581 * 180.02562 * 20 19 16 22 22 C 1.38265 * 120.05343 * 0.02562 * 21 20 19 23 23 C 1.38181 * 120.02597 * 359.97438 * 22 21 20 24 24 C 1.38443 * 120.00897 * 275.01956 * 19 16 3 25 25 F 1.35099 * 120.02540 * 359.97438 * 24 19 16 26 26 H 1.09000 * 109.47049 * 299.99952 * 1 2 3 27 27 H 1.09008 * 109.47169 * 60.00012 * 1 2 3 28 28 H 1.09004 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46987 * 240.00557 * 2 1 3 30 30 H 1.08996 * 109.47189 * 120.00446 * 2 1 3 31 31 H 0.97003 * 119.99475 * 95.00353 * 5 3 2 32 32 H 0.97001 * 119.99555 * 180.02562 * 11 10 8 33 33 H 0.96708 * 114.00332 * 299.99873 * 18 16 3 34 34 H 1.08000 * 119.98343 * 359.97438 * 20 19 16 35 35 H 1.07997 * 119.97708 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.99414 * 179.72576 * 22 21 20 37 37 H 1.08002 * 120.01438 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4351 2.6643 1.3670 7 8 -0.3422 2.6318 0.4314 8 6 0.0482 3.3191 2.6176 9 1 0.7379 3.3476 3.4482 10 6 -1.2170 3.9078 2.7375 11 7 -2.0517 3.8728 1.7327 12 14 -1.7111 4.7428 4.3337 13 1 -0.5958 4.6454 5.3092 14 1 -2.0161 6.1722 4.0708 15 1 -2.9147 4.0742 4.8901 16 6 3.5648 1.4442 -0.1257 17 1 3.8498 1.0376 -1.0960 18 8 4.1293 0.6403 0.9120 19 6 4.0773 2.8561 -0.0024 20 6 4.5077 3.3309 1.2222 21 6 4.9772 4.6259 1.3357 22 6 5.0166 5.4481 0.2247 23 6 4.5870 4.9756 -1.0007 24 6 4.1169 3.6781 -1.1157 25 9 3.6966 3.2150 -2.3132 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.2720 2.1230 1.9978 32 1 -2.9278 4.2808 1.8156 33 1 3.9163 0.9442 1.8051 34 1 4.4762 2.6900 2.0910 35 1 5.3137 4.9960 2.2929 36 1 5.3796 6.4612 0.3154 37 1 4.6182 5.6178 -1.8684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595441044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:15 Heat of formation + Delta-G solvation = -115.947047 kcal Electronic energy + Delta-G solvation = -22859.427208 eV Core-core repulsion = 19322.864669 eV Total energy + Delta-G solvation = -3536.562540 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.74197 -39.71092 -37.93569 -36.47079 -33.84214 -32.36198 -31.50252 -30.91183 -30.44385 -27.66433 -26.04152 -23.75012 -22.60583 -21.21670 -20.89546 -19.26558 -18.04539 -17.39361 -16.60050 -16.34612 -15.58782 -15.43281 -15.36725 -14.77252 -14.37156 -14.02754 -13.82625 -13.67936 -13.60512 -12.97470 -12.60707 -12.35363 -12.04701 -11.90616 -11.62870 -11.32403 -11.23202 -11.14019 -11.04651 -10.89205 -10.54104 -10.46265 -10.15336 -10.02652 -9.82821 -8.86993 -8.83597 -8.49519 -7.60614 -7.45671 -6.19501 -4.64803 1.26309 1.31037 3.10738 3.19357 3.22874 3.66439 4.07776 4.34471 4.45709 4.55903 4.60010 4.81067 4.81875 4.99639 5.21411 5.33159 5.39131 5.65920 5.67852 5.87048 5.89157 5.99715 6.11006 6.17711 6.23300 6.37443 6.45852 6.48648 6.60796 6.67246 6.97290 6.98124 7.38958 7.42291 7.60867 7.87522 8.07039 8.29835 9.01806 9.49910 10.59122 10.78564 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.006785 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.592937 B = 4125.992770 C = 5008.750218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.129 3.871 4 H 0.085 0.915 5 N -0.758 5.758 6 C 0.559 3.441 7 O -0.569 6.569 8 C -0.545 4.545 9 H 0.065 0.935 10 C 0.089 3.911 11 N -0.766 5.766 12 Si 0.903 3.097 13 H -0.265 1.265 14 H -0.277 1.277 15 H -0.277 1.277 16 C 0.141 3.859 17 H 0.113 0.887 18 O -0.550 6.550 19 C -0.132 4.132 20 C -0.078 4.078 21 C -0.124 4.124 22 C -0.096 4.096 23 C -0.153 4.153 24 C 0.106 3.894 25 F -0.138 7.138 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.371 0.629 32 H 0.267 0.733 33 H 0.372 0.628 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.490 -0.172 -0.727 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.023 3.977 4 H 0.103 0.897 5 N -0.414 5.414 6 C 0.363 3.637 7 O -0.452 6.452 8 C -0.582 4.582 9 H 0.083 0.917 10 C -0.131 4.131 11 N -0.395 5.395 12 Si 0.728 3.272 13 H -0.188 1.188 14 H -0.203 1.203 15 H -0.202 1.202 16 C 0.081 3.919 17 H 0.130 0.870 18 O -0.356 6.356 19 C -0.133 4.133 20 C -0.096 4.096 21 C -0.142 4.142 22 C -0.114 4.114 23 C -0.171 4.171 24 C 0.087 3.913 25 F -0.117 7.117 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.203 0.797 32 H 0.078 0.922 33 H 0.221 0.779 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.927 -0.498 -2.069 13.101 hybrid contribution -0.328 0.832 1.360 1.627 sum 12.599 0.334 -0.709 12.624 Atomic orbital electron populations 1.21776 0.94458 0.98927 1.04538 1.21791 0.97294 0.95996 1.00792 1.21226 0.90900 0.93961 0.91651 0.89732 1.46149 1.18997 1.62904 1.13332 1.18091 0.78813 0.77688 0.89062 1.90616 1.50794 1.62418 1.41328 1.20883 1.00631 1.38088 0.98627 0.91684 1.25667 0.96010 0.94590 0.96812 1.70021 1.05913 1.33780 1.29749 0.86384 0.79036 0.79215 0.82525 1.18849 1.20261 1.20218 1.21149 0.92741 0.85668 0.92297 0.86960 1.86579 1.76443 1.55086 1.17472 1.20521 1.01608 0.97875 0.93313 1.20683 0.97089 0.95887 0.95955 1.21119 1.00366 0.93822 0.98870 1.20952 0.98843 0.99767 0.91878 1.21086 1.02245 0.94247 0.99563 1.17433 0.99979 0.93289 0.80620 1.91484 1.87824 1.89006 1.43365 0.90587 0.92715 0.95236 0.93028 0.92223 0.79709 0.92245 0.77944 0.85395 0.85379 0.85297 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.60 16 2 C -0.12 -2.16 5.33 -26.73 -0.14 -2.30 16 3 C 0.13 2.43 2.15 -67.93 -0.15 2.29 16 4 H 0.08 1.87 7.58 -51.93 -0.39 1.48 16 5 N -0.76 -15.70 4.39 -55.22 -0.24 -15.95 16 6 C 0.56 14.95 6.31 -12.99 -0.08 14.87 16 7 O -0.57 -17.28 12.15 5.21 0.06 -17.21 16 8 C -0.55 -14.80 9.54 -35.63 -0.34 -15.14 16 9 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 10 C 0.09 2.42 5.50 -17.36 -0.10 2.33 16 11 N -0.77 -22.45 11.83 55.55 0.66 -21.79 16 12 Si 0.90 19.82 29.56 -169.99 -5.02 14.80 16 13 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 C 0.14 2.18 2.86 -27.88 -0.08 2.10 16 17 H 0.11 1.68 7.79 -51.93 -0.40 1.28 16 18 O -0.55 -7.71 12.21 -35.23 -0.43 -8.14 16 19 C -0.13 -2.02 4.64 -104.55 -0.49 -2.50 16 20 C -0.08 -1.05 8.36 -39.60 -0.33 -1.38 16 21 C -0.12 -1.51 10.04 -39.58 -0.40 -1.91 16 22 C -0.10 -1.16 10.04 -39.59 -0.40 -1.56 16 23 C -0.15 -2.08 10.03 -39.51 -0.40 -2.48 16 24 C 0.11 1.68 7.24 -39.42 -0.29 1.39 16 25 F -0.14 -2.29 16.57 2.25 0.04 -2.25 16 26 H 0.08 1.88 5.64 -51.93 -0.29 1.59 16 27 H 0.05 1.23 7.84 -51.92 -0.41 0.82 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.03 7.73 -51.93 -0.40 0.62 16 31 H 0.37 6.68 6.29 -40.82 -0.26 6.42 16 32 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 33 H 0.37 4.38 6.09 45.56 0.28 4.65 16 34 H 0.13 1.42 6.15 -52.49 -0.32 1.10 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -32.99 310.29 -6.99 -39.98 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -3.86 Total: 12.79 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.86 Total: -6.90 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.41 Total: -37.74 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.37 Total: -25.35 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.99 -6.99 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595441044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.971 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds