Wall clock time and date at job start Tue Mar 31 2020 06:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 89.99935 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00326 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00479 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 C 1.46505 * 119.99943 * 180.02562 * 14 12 2 16 16 H 1.09000 * 109.47005 * 34.99550 * 15 14 12 17 17 C 1.52998 * 109.47270 * 155.00201 * 15 14 12 18 18 C 1.50709 * 109.46858 * 294.99894 * 17 15 14 19 19 C 1.34666 * 126.58675 * 85.02441 * 18 17 15 20 20 N 1.34134 * 108.01704 * 179.97438 * 19 18 17 21 21 C 1.30494 * 109.25452 * 359.97438 * 20 19 18 22 22 N 1.35042 * 108.70249 * 359.76930 * 21 20 19 23 23 H 0.97003 * 126.39902 * 180.25805 * 22 21 20 24 24 C 1.50704 * 109.47149 * 275.00363 * 15 14 12 25 25 O 1.20824 * 119.99771 * 359.97438 * 24 15 14 26 26 O 1.34223 * 120.00090 * 180.02562 * 24 15 14 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 32 32 H 1.08993 * 109.47251 * 54.99730 * 17 15 14 33 33 H 1.09002 * 109.47210 * 175.00236 * 17 15 14 34 34 H 1.07997 * 125.99244 * 359.96420 * 19 18 17 35 35 H 1.08005 * 125.64828 * 180.02562 * 21 20 19 36 36 H 0.96696 * 117.00214 * 179.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 1 2.2311 -2.0137 -3.4612 17 6 1.2507 -0.6615 -4.8218 18 6 -0.0992 -1.2670 -4.5344 19 6 -1.0980 -0.7031 -3.8287 20 7 -2.1265 -1.5639 -3.8050 21 6 -1.8030 -2.6393 -4.4696 22 7 -0.5479 -2.4928 -4.9460 23 1 -0.0556 -3.1370 -5.4786 24 6 3.5764 -0.4437 -3.9896 25 8 4.0996 0.4015 -3.3026 26 8 4.2253 -0.9389 -5.0550 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 0.7081 1.1610 3.4844 31 1 1.1494 0.5389 -2.5436 32 1 1.1451 0.4152 -4.9545 33 1 1.6599 -1.1013 -5.7314 34 1 -1.0749 0.2711 -3.3633 35 1 -2.4359 -3.5018 -4.6180 36 1 5.1091 -0.5889 -5.2326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:03 Heat of formation + Delta-G solvation = -73.769188 kcal Electronic energy + Delta-G solvation = -22404.121083 eV Core-core repulsion = 18889.307474 eV Total energy + Delta-G solvation = -3514.813609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.10422 -40.39799 -38.65037 -36.08338 -35.33037 -33.69968 -32.64677 -31.62889 -30.26788 -28.41215 -25.07033 -24.95124 -22.91858 -21.63105 -21.05212 -20.84215 -19.49215 -18.08585 -18.02635 -16.83184 -16.27101 -16.13510 -15.60376 -15.25573 -14.80600 -14.45439 -14.31227 -13.94920 -13.59937 -13.37161 -13.01403 -12.80480 -12.69048 -12.33775 -11.94411 -11.49591 -11.42329 -10.95876 -10.70927 -10.64935 -10.58560 -10.17963 -10.03040 -9.98219 -9.92274 -8.92998 -8.79370 -8.62651 -8.41666 -8.29082 -5.97577 -4.00501 1.89523 2.29441 2.82498 3.05078 3.20092 3.37734 3.42933 3.49331 3.66468 3.86645 4.50920 4.52297 4.62978 4.74382 4.85373 5.16314 5.35133 5.37563 5.42438 5.53802 5.58766 6.12051 6.22326 6.49559 6.67876 6.73278 6.81116 6.91978 7.01208 7.29339 7.54059 7.82398 7.92644 7.99284 8.04869 8.15614 8.42295 9.06981 9.16620 9.64279 11.10060 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.005729 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.045865 B = 4886.620701 C = 6078.216575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.531 3.469 13 O -0.544 6.544 14 N -0.720 5.720 15 C 0.164 3.836 16 H 0.120 0.880 17 C -0.042 4.042 18 C -0.029 4.029 19 C -0.001 4.001 20 N -0.490 5.490 21 C 0.185 3.815 22 N -0.566 5.566 23 H 0.418 0.582 24 C 0.460 3.540 25 O -0.492 6.492 26 O -0.523 6.523 27 H 0.031 0.969 28 H 0.013 0.987 29 H 0.093 0.907 30 H 0.260 0.740 31 H 0.403 0.597 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.169 0.831 35 H 0.206 0.794 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 -3.495 -19.917 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.011 3.989 3 H 0.073 0.927 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.322 3.678 13 O -0.419 6.419 14 N -0.376 5.376 15 C 0.055 3.945 16 H 0.137 0.863 17 C -0.082 4.082 18 C -0.144 4.144 19 C -0.149 4.149 20 N -0.208 5.208 21 C -0.099 4.099 22 N -0.170 5.170 23 H 0.255 0.745 24 C 0.299 3.701 25 O -0.377 6.377 26 O -0.335 6.335 27 H 0.050 0.950 28 H 0.032 0.968 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.238 0.762 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.186 0.814 35 H 0.223 0.777 36 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -2.421 -3.848 -18.951 19.488 hybrid contribution 1.744 -0.317 0.050 1.773 sum -0.678 -4.165 -18.901 19.366 Atomic orbital electron populations 1.21712 0.96049 0.99911 1.00990 1.18879 0.94350 0.96880 0.88780 0.92739 1.21117 1.30967 1.12792 0.89014 0.90931 1.24930 0.95119 0.95092 0.99041 1.69869 1.36999 1.23095 1.23500 0.86462 0.78438 0.80205 0.82159 1.20700 1.21265 1.19838 1.22108 0.77629 0.83864 0.84221 1.90523 1.37790 1.27067 1.86531 1.46134 1.54481 1.32916 1.04047 1.20221 0.86255 1.00264 0.87795 0.86273 1.20183 0.88773 1.02293 0.96907 1.20843 0.98008 0.88559 1.06953 1.22127 0.89689 1.00865 1.02250 1.70315 1.29335 1.01882 1.19279 1.24971 0.85307 1.00375 0.99244 1.43235 1.15049 1.15834 1.42888 0.74468 1.24322 0.89183 0.79351 0.77249 1.90760 1.67589 1.30346 1.48961 1.84504 1.35211 1.66443 1.47306 0.95001 0.96777 0.88868 0.92970 0.76167 0.88296 0.88561 0.81382 0.77700 0.73478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.87 37.16 0.33 -2.68 16 2 C 0.03 0.82 2.64 -92.92 -0.25 0.57 16 3 H 0.05 1.46 8.14 -51.93 -0.42 1.03 16 4 C -0.50 -14.58 8.37 -34.44 -0.29 -14.87 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.90 -25.67 11.32 55.43 0.63 -25.04 16 8 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 12 C 0.53 12.25 6.98 -10.99 -0.08 12.17 16 13 O -0.54 -14.30 15.12 5.56 0.08 -14.21 16 14 N -0.72 -12.30 3.98 -54.93 -0.22 -12.52 16 15 C 0.16 2.25 2.47 -69.08 -0.17 2.08 16 16 H 0.12 1.79 7.58 -51.93 -0.39 1.40 16 17 C -0.04 -0.39 5.28 -27.88 -0.15 -0.54 16 18 C -0.03 -0.31 6.29 -81.60 -0.51 -0.83 16 19 C 0.00 -0.01 11.40 -17.81 -0.20 -0.21 16 20 N -0.49 -7.02 11.25 -14.67 -0.17 -7.19 16 21 C 0.18 1.94 13.04 -90.38 -1.18 0.76 16 22 N -0.57 -5.06 6.15 -10.30 -0.06 -5.12 16 23 H 0.42 2.28 8.96 -40.82 -0.37 1.92 16 24 C 0.46 6.63 7.66 36.01 0.28 6.91 16 25 O -0.49 -9.20 17.08 -18.75 -0.32 -9.52 16 26 O -0.52 -5.32 13.23 -39.24 -0.52 -5.84 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.01 0.26 7.56 -51.93 -0.39 -0.13 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.40 6.01 7.85 -40.82 -0.32 5.69 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.66 7.99 -51.93 -0.42 0.25 16 34 H 0.17 2.10 8.00 -52.49 -0.42 1.68 16 35 H 0.21 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.41 2.58 9.10 45.56 0.41 3.00 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -38.20 317.96 -6.50 -44.70 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -3.39 Total: 7.67 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -2.31 Total: 4.94 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.18 Total: -49.87 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.76 Total: -29.57 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -38.20 -6.50 -44.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.069 kcal (2) G-P(sol) polarization free energy of solvation -38.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds