Wall clock time and date at job start Tue Mar 31 2020 05:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.50695 * 109.46942 * 185.00287 * 3 2 1 5 5 O 1.20824 * 120.00328 * 359.97438 * 4 3 2 6 6 O 1.34230 * 119.99988 * 180.02562 * 4 3 2 7 7 N 1.46902 * 109.46626 * 240.00335 * 2 1 3 8 8 C 1.46891 * 111.00371 * 60.00148 * 7 2 1 9 9 C 1.50696 * 109.47517 * 179.97438 * 8 7 2 10 10 H 1.08007 * 119.99655 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00300 * 179.97438 * 9 8 7 12 12 N 1.31505 * 119.99792 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99957 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47382 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47153 * 119.99824 * 13 11 9 16 16 H 1.48502 * 109.47567 * 240.00185 * 13 11 9 17 17 C 1.50697 * 109.47239 * 120.00495 * 2 1 3 18 18 C 1.38276 * 119.98404 * 269.72384 * 17 2 1 19 19 C 1.38220 * 120.04726 * 179.72339 * 18 17 2 20 20 C 1.38224 * 120.02831 * 0.55159 * 19 18 17 21 21 C 1.38436 * 119.97079 * 359.72288 * 20 19 18 22 22 F 1.35106 * 120.02250 * 180.02562 * 21 20 19 23 23 C 1.38174 * 119.99277 * 89.99705 * 17 2 1 24 24 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 28 28 H 1.08998 * 109.46934 * 65.00238 * 3 2 1 29 29 H 0.96695 * 117.00217 * 179.97438 * 6 4 3 30 30 H 1.00901 * 111.00140 * 296.04139 * 7 2 1 31 31 H 1.09000 * 109.46944 * 299.99658 * 8 7 2 32 32 H 1.09001 * 109.47173 * 59.99579 * 8 7 2 33 33 H 0.97008 * 120.00135 * 180.02562 * 12 11 9 34 34 H 1.07997 * 119.97184 * 359.97438 * 18 17 2 35 35 H 1.08000 * 119.98657 * 180.26952 * 19 18 17 36 36 H 1.08002 * 120.01075 * 179.70082 * 20 19 18 37 37 H 1.08004 * 120.00901 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5419 1.4442 -0.1239 5 8 4.1428 0.3990 -0.2035 6 8 4.2123 2.6070 -0.1448 7 7 2.0196 -0.6925 -1.1995 8 6 1.5486 -0.0263 -2.4211 9 6 2.0701 -0.7628 -3.6279 10 1 2.6899 -1.6381 -3.5002 11 6 1.7561 -0.3194 -4.8951 12 7 1.0019 0.7466 -5.0506 13 14 2.4032 -1.2320 -6.3911 14 1 3.2223 -2.3891 -5.9490 15 1 1.2612 -1.7176 -7.2069 16 1 3.2398 -0.3155 -7.2066 17 6 2.0324 -0.7105 1.2304 18 6 2.2682 0.0018 2.3918 19 6 2.7235 -0.6494 3.5228 20 6 2.9545 -2.0119 3.4906 21 6 2.7242 -2.7250 2.3266 22 9 2.9492 -4.0568 2.2941 23 6 2.2626 -2.0725 1.1959 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6054 1.9815 -0.8417 28 1 1.7517 1.9297 0.9314 29 1 5.1746 2.5575 -0.2253 30 1 1.7502 -1.6648 -1.1910 31 1 0.4588 -0.0265 -2.4378 32 1 1.9121 1.0012 -2.4378 33 1 0.7806 1.0584 -5.9421 34 1 2.0926 1.0671 2.4165 35 1 2.9032 -0.0928 4.4307 36 1 3.3149 -2.5196 4.3730 37 1 2.0830 -2.6278 0.2871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604089445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:19 Heat of formation + Delta-G solvation = -101.053688 kcal Electronic energy + Delta-G solvation = -22590.348210 eV Core-core repulsion = 19054.431495 eV Total energy + Delta-G solvation = -3535.916715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.71688 -40.34077 -38.87604 -36.73054 -35.31377 -33.07551 -31.14098 -30.75762 -29.26081 -28.10655 -26.22196 -23.63775 -22.65508 -21.61089 -21.44534 -18.90576 -17.68555 -17.42445 -16.47320 -16.23218 -15.98805 -15.75259 -15.40597 -15.26790 -14.66425 -14.33322 -13.95623 -13.66562 -13.30204 -13.06498 -12.82561 -12.38740 -12.33186 -12.07717 -11.93581 -11.63008 -11.58311 -11.18373 -10.97779 -10.82072 -10.75037 -10.60273 -10.50177 -9.88613 -9.83473 -9.19229 -8.76040 -8.54586 -8.48073 -7.26596 -6.06524 -4.06930 1.30691 1.40016 2.90336 3.29895 3.37547 3.43572 3.52167 3.73332 4.36125 4.41440 4.72750 4.78867 4.95337 5.12972 5.17231 5.21366 5.30313 5.44175 5.56652 5.67507 5.83646 5.89607 5.90454 6.07468 6.10319 6.19357 6.30939 6.39388 6.47040 6.69471 7.03778 7.04522 7.14656 7.35083 7.76236 8.07010 8.30608 8.51776 8.56097 9.02090 9.57951 11.04579 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017706 B = 0.005597 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.016918 B = 5001.145879 C = 5694.326254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.158 3.842 3 C -0.100 4.100 4 C 0.473 3.527 5 O -0.466 6.466 6 O -0.533 6.533 7 N -0.662 5.662 8 C 0.189 3.811 9 C -0.510 4.510 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.011 4.011 18 C -0.140 4.140 19 C -0.091 4.091 20 C -0.168 4.168 21 C 0.098 3.902 22 F -0.144 7.144 23 C -0.130 4.130 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.402 0.598 30 H 0.332 0.668 31 H -0.005 1.005 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.794 1.223 16.381 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.066 3.934 3 C -0.138 4.138 4 C 0.312 3.688 5 O -0.349 6.349 6 O -0.345 6.345 7 N -0.294 5.294 8 C 0.063 3.937 9 C -0.549 4.549 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.012 4.012 18 C -0.158 4.158 19 C -0.109 4.109 20 C -0.187 4.187 21 C 0.079 3.921 22 F -0.123 7.123 23 C -0.149 4.149 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.131 0.869 28 H 0.116 0.884 29 H 0.259 0.741 30 H 0.151 0.849 31 H 0.012 0.988 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.078 1.296 16.226 16.313 hybrid contribution 0.113 -0.885 -1.081 1.402 sum 1.191 0.410 15.145 15.197 Atomic orbital electron populations 1.22546 0.95502 1.02788 1.02810 1.19558 0.92014 0.91509 0.90323 1.21512 0.88854 0.98332 1.05112 1.23058 0.91247 0.80985 0.73483 1.90763 1.69455 1.32563 1.42102 1.84513 1.26431 1.37153 1.86434 1.60978 1.62521 1.05348 1.00504 1.19680 0.93471 0.95098 0.85437 1.21196 1.30920 1.12622 0.90117 0.91943 1.24949 0.95230 0.95198 0.99094 1.69950 1.37493 1.23775 1.22625 0.86452 0.78626 0.79842 0.82575 1.19661 1.21100 1.21042 1.19598 0.94771 0.92671 0.94131 1.21090 1.01798 1.00128 0.92810 1.20850 0.98341 0.93421 0.98307 1.21009 1.05163 0.95183 0.97328 1.17690 1.01632 0.77423 0.95323 1.91480 1.92510 1.31124 1.97147 1.20937 1.01341 0.95168 0.97426 0.92536 0.90480 0.92103 0.86916 0.88351 0.74062 0.84917 0.98768 0.95557 0.92990 0.85694 0.85477 0.85373 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.21 37.16 0.31 -2.31 16 2 C 0.16 2.59 0.44 -132.75 -0.06 2.53 16 3 C -0.10 -1.55 3.92 -27.89 -0.11 -1.65 16 4 C 0.47 8.13 7.52 36.00 0.27 8.40 16 5 O -0.47 -9.53 14.80 -18.75 -0.28 -9.81 16 6 O -0.53 -7.66 13.42 -39.26 -0.53 -8.18 16 7 N -0.66 -13.63 4.27 -102.40 -0.44 -14.07 16 8 C 0.19 4.66 4.65 -4.98 -0.02 4.64 16 9 C -0.51 -14.24 9.32 -34.44 -0.32 -14.56 16 10 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 13 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 C -0.01 -0.17 3.50 -104.63 -0.37 -0.53 16 18 C -0.14 -1.80 8.80 -39.57 -0.35 -2.14 16 19 C -0.09 -1.05 10.04 -39.59 -0.40 -1.45 16 20 C -0.17 -2.11 10.03 -39.51 -0.40 -2.50 16 21 C 0.10 1.46 7.30 -39.42 -0.29 1.18 16 22 F -0.14 -2.21 17.27 2.25 0.04 -2.17 16 23 C -0.13 -2.06 9.26 -39.52 -0.37 -2.42 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 1.26 6.40 -51.93 -0.33 0.93 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.11 1.86 6.68 -51.93 -0.35 1.52 16 28 H 0.10 1.15 6.21 -51.93 -0.32 0.83 16 29 H 0.40 4.21 9.10 45.56 0.41 4.63 16 30 H 0.33 6.70 6.75 -39.29 -0.27 6.44 16 31 H -0.01 -0.13 6.30 -51.93 -0.33 -0.46 16 32 H 0.03 0.70 6.39 -51.93 -0.33 0.36 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.13 1.34 6.04 -52.49 -0.32 1.03 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.14 2.23 6.27 -52.48 -0.33 1.90 16 LS Contribution 311.04 15.07 4.69 4.69 Total: -1.00 -32.57 311.04 -6.39 -38.96 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -3.39 Total: 8.62 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -2.20 Total: -9.33 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.30 Total: -39.52 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.80 Total: -17.99 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.57 -6.39 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604089445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.092 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds