Wall clock time and date at job start Tue Mar 31 2020 05:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.50695 * 109.46942 * 185.00287 * 3 2 1 5 5 O 1.20824 * 120.00328 * 359.97438 * 4 3 2 6 6 O 1.34230 * 119.99988 * 180.02562 * 4 3 2 7 7 N 1.46902 * 109.46626 * 240.00335 * 2 1 3 8 8 C 1.46891 * 111.00371 * 60.00148 * 7 2 1 9 9 C 1.50696 * 109.47517 * 179.97438 * 8 7 2 10 10 H 1.08007 * 119.99655 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00300 * 179.97438 * 9 8 7 12 12 N 1.31505 * 119.99792 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99957 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47382 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47153 * 119.99824 * 13 11 9 16 16 H 1.48502 * 109.47567 * 240.00185 * 13 11 9 17 17 C 1.50697 * 109.47239 * 120.00495 * 2 1 3 18 18 C 1.38276 * 119.98404 * 269.72384 * 17 2 1 19 19 C 1.38220 * 120.04726 * 179.72339 * 18 17 2 20 20 C 1.38224 * 120.02831 * 0.55159 * 19 18 17 21 21 C 1.38436 * 119.97079 * 359.72288 * 20 19 18 22 22 F 1.35106 * 120.02250 * 180.02562 * 21 20 19 23 23 C 1.38174 * 119.99277 * 89.99705 * 17 2 1 24 24 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 28 28 H 1.08998 * 109.46934 * 65.00238 * 3 2 1 29 29 H 0.96695 * 117.00217 * 179.97438 * 6 4 3 30 30 H 1.00901 * 111.00140 * 296.04139 * 7 2 1 31 31 H 1.09000 * 109.46944 * 299.99658 * 8 7 2 32 32 H 1.09001 * 109.47173 * 59.99579 * 8 7 2 33 33 H 0.97008 * 120.00135 * 180.02562 * 12 11 9 34 34 H 1.07997 * 119.97184 * 359.97438 * 18 17 2 35 35 H 1.08000 * 119.98657 * 180.26952 * 19 18 17 36 36 H 1.08002 * 120.01075 * 179.70082 * 20 19 18 37 37 H 1.08004 * 120.00901 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5419 1.4442 -0.1239 5 8 4.1428 0.3990 -0.2035 6 8 4.2123 2.6070 -0.1448 7 7 2.0196 -0.6925 -1.1995 8 6 1.5486 -0.0263 -2.4211 9 6 2.0701 -0.7628 -3.6279 10 1 2.6899 -1.6381 -3.5002 11 6 1.7561 -0.3194 -4.8951 12 7 1.0019 0.7466 -5.0506 13 14 2.4032 -1.2320 -6.3911 14 1 3.2223 -2.3891 -5.9490 15 1 1.2612 -1.7176 -7.2069 16 1 3.2398 -0.3155 -7.2066 17 6 2.0324 -0.7105 1.2304 18 6 2.2682 0.0018 2.3918 19 6 2.7235 -0.6494 3.5228 20 6 2.9545 -2.0119 3.4906 21 6 2.7242 -2.7250 2.3266 22 9 2.9492 -4.0568 2.2941 23 6 2.2626 -2.0725 1.1959 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6054 1.9815 -0.8417 28 1 1.7517 1.9297 0.9314 29 1 5.1746 2.5575 -0.2253 30 1 1.7502 -1.6648 -1.1910 31 1 0.4588 -0.0265 -2.4378 32 1 1.9121 1.0012 -2.4378 33 1 0.7806 1.0584 -5.9421 34 1 2.0926 1.0671 2.4165 35 1 2.9032 -0.0928 4.4307 36 1 3.3149 -2.5196 4.3730 37 1 2.0830 -2.6278 0.2871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604089445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:19 Heat of formation + Delta-G solvation = -122.765331 kcal Electronic energy + Delta-G solvation = -22591.289698 eV Core-core repulsion = 19054.431495 eV Total energy + Delta-G solvation = -3536.858202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.85832 -41.60910 -40.06810 -38.02880 -36.65646 -35.05624 -32.73371 -31.85898 -30.43062 -29.41309 -28.08075 -25.06396 -23.92278 -22.97594 -22.79287 -20.20372 -19.14915 -18.74850 -18.05537 -17.55541 -17.16821 -16.98198 -16.63986 -16.55299 -16.46395 -15.76823 -15.37663 -14.86773 -14.65940 -14.38460 -14.20420 -13.88729 -13.77892 -13.44076 -13.15770 -12.97418 -12.89813 -12.72010 -12.62051 -12.41163 -12.19558 -12.09421 -12.01426 -11.52524 -11.24892 -11.22811 -10.64587 -9.82760 -9.58927 -8.91765 -8.22653 -6.30576 0.25628 0.36663 1.36858 1.38343 1.51305 1.57283 2.33464 2.39012 2.68920 3.10804 3.27298 3.50483 3.61038 3.71636 4.02556 4.16251 4.18014 4.23332 4.50868 4.56752 4.63654 4.65584 4.80185 4.90886 4.98595 5.10070 5.16473 5.23194 5.25421 5.38515 5.44752 5.58734 5.65050 5.87315 6.01085 6.06801 6.49664 6.74030 6.89619 7.29596 7.39130 8.88100 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017706 B = 0.005597 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.016918 B = 5001.145879 C = 5694.326254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.156 3.844 3 C -0.102 4.102 4 C 0.473 3.527 5 O -0.506 6.506 6 O -0.525 6.525 7 N -0.669 5.669 8 C 0.210 3.790 9 C -0.533 4.533 10 H 0.050 0.950 11 C 0.009 3.991 12 N -0.927 5.927 13 Si 0.961 3.039 14 H -0.272 1.272 15 H -0.275 1.275 16 H -0.278 1.278 17 C -0.023 4.023 18 C -0.138 4.138 19 C -0.080 4.080 20 C -0.163 4.163 21 C 0.077 3.923 22 F -0.154 7.154 23 C -0.154 4.154 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.144 0.856 29 H 0.419 0.581 30 H 0.329 0.671 31 H -0.021 1.021 32 H 0.006 0.994 33 H 0.265 0.735 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.127 2.156 18.377 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.064 3.936 3 C -0.140 4.140 4 C 0.315 3.685 5 O -0.392 6.392 6 O -0.339 6.339 7 N -0.300 5.300 8 C 0.083 3.917 9 C -0.572 4.572 10 H 0.069 0.931 11 C -0.190 4.190 12 N -0.567 5.567 13 Si 0.787 3.213 14 H -0.196 1.196 15 H -0.200 1.200 16 H -0.204 1.204 17 C -0.024 4.024 18 C -0.156 4.156 19 C -0.098 4.098 20 C -0.181 4.181 21 C 0.058 3.942 22 F -0.132 7.132 23 C -0.174 4.174 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.162 0.838 29 H 0.279 0.721 30 H 0.148 0.852 31 H -0.003 1.003 32 H 0.024 0.976 33 H 0.073 0.927 34 H 0.169 0.831 35 H 0.187 0.813 36 H 0.172 0.828 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.418 2.248 18.237 18.429 hybrid contribution 0.051 -1.130 -1.616 1.972 sum 1.469 1.118 16.621 16.723 Atomic orbital electron populations 1.22448 0.94370 1.02697 1.03358 1.19671 0.92958 0.91875 0.89067 1.21617 0.87805 0.97746 1.06799 1.23371 0.91919 0.80890 0.72345 1.90757 1.70372 1.33970 1.44111 1.84473 1.27989 1.35710 1.85744 1.60830 1.63067 1.05276 1.00823 1.19253 0.92108 0.93843 0.86506 1.21545 1.31031 1.12674 0.91909 0.93148 1.25744 0.95372 0.95977 1.01892 1.70043 1.38319 1.24900 1.23482 0.85457 0.78246 0.78591 0.79039 1.19645 1.20044 1.20405 1.19499 0.96086 0.92334 0.94453 1.21412 1.00795 1.01325 0.92116 1.21323 0.96177 0.93014 0.99237 1.21384 1.03871 0.95825 0.97052 1.17939 1.02793 0.77303 0.96150 1.91448 1.92716 1.31828 1.97247 1.20906 1.03146 0.95889 0.97410 0.89017 0.92685 0.92588 0.88373 0.83828 0.72098 0.85230 1.00323 0.97573 0.92652 0.83087 0.81319 0.82782 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.95 8.21 71.98 0.59 -4.36 16 2 C 0.16 5.07 0.44 2.78 0.00 5.07 16 3 C -0.10 -3.02 3.92 29.85 0.12 -2.90 16 4 C 0.47 15.81 7.52 71.23 0.54 16.34 16 5 O -0.51 -20.68 14.80 21.97 0.33 -20.35 16 6 O -0.53 -14.17 13.42 -51.41 -0.69 -14.86 16 7 N -0.67 -28.61 4.27 -477.89 -2.04 -30.65 16 8 C 0.21 10.78 4.65 85.56 0.40 11.17 16 9 C -0.53 -30.75 9.32 25.60 0.24 -30.51 16 10 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 11 C 0.01 0.50 5.46 84.66 0.46 0.96 16 12 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 13 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 14 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 15 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 C -0.02 -0.68 3.50 -19.87 -0.07 -0.75 16 18 C -0.14 -3.08 8.80 22.27 0.20 -2.88 16 19 C -0.08 -1.50 10.04 22.26 0.22 -1.28 16 20 C -0.16 -3.62 10.03 22.31 0.22 -3.39 16 21 C 0.08 2.26 7.30 22.37 0.16 2.42 16 22 F -0.15 -4.76 17.27 44.97 0.78 -3.98 16 23 C -0.15 -4.98 9.26 22.31 0.21 -4.77 16 24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.05 1.84 6.40 -2.39 -0.02 1.82 16 26 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.10 3.24 6.68 -2.39 -0.02 3.22 16 28 H 0.14 2.83 6.21 -2.39 -0.01 2.82 16 29 H 0.42 8.08 9.10 -74.06 -0.67 7.40 16 30 H 0.33 14.14 6.75 -89.69 -0.61 13.53 16 31 H -0.02 -1.11 6.30 -2.39 -0.02 -1.12 16 32 H 0.01 0.34 6.39 -2.39 -0.02 0.33 16 33 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 34 H 0.15 2.49 6.04 -2.91 -0.02 2.48 16 35 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.12 4.10 6.27 -2.91 -0.02 4.08 16 Total: -1.00 -72.27 311.04 3.82 -68.45 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -0.15 Total: 23.63 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 3.29 Total: -14.87 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -1.76 Total: -85.26 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.36 Total: -35.21 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.78 Total: -3.98 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.27 3.82 -68.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604089445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.319 kcal (2) G-P(sol) polarization free energy of solvation -72.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds