Wall clock time and date at job start Tue Mar 31 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47066 * 2 1 4 4 H 1.09000 * 109.46630 * 302.72347 * 3 2 1 5 5 C 1.50697 * 109.46895 * 182.72390 * 3 2 1 6 6 H 1.08005 * 120.00032 * 239.99835 * 5 3 2 7 7 C 1.37875 * 120.00441 * 59.99786 * 5 3 2 8 8 N 1.31520 * 119.99781 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00259 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47276 * 90.00119 * 9 7 5 11 11 H 1.48497 * 109.47019 * 210.00354 * 9 7 5 12 12 H 1.48504 * 109.46711 * 329.99940 * 9 7 5 13 13 N 1.46900 * 109.46950 * 62.72233 * 3 2 1 14 14 C 1.46906 * 110.99674 * 206.55704 * 13 3 2 15 15 H 1.09003 * 109.47096 * 326.84805 * 14 13 3 16 16 C 1.50691 * 109.47137 * 86.85170 * 14 13 3 17 17 O 1.20828 * 120.00188 * 25.89856 * 16 14 13 18 18 O 1.34229 * 120.00098 * 205.89834 * 16 14 13 19 19 C 1.50702 * 109.46727 * 206.85037 * 14 13 3 20 20 C 1.38218 * 120.01345 * 340.00159 * 19 14 13 21 21 C 1.38226 * 120.02569 * 179.97438 * 20 19 14 22 22 C 1.38272 * 120.04674 * 0.02562 * 21 20 19 23 23 C 1.38168 * 120.03116 * 359.97438 * 22 21 20 24 24 C 1.38434 * 120.00976 * 159.72557 * 19 14 13 25 25 F 1.35096 * 120.02624 * 359.97438 * 24 19 14 26 26 H 1.08999 * 109.47273 * 293.76675 * 1 2 3 27 27 H 1.09008 * 109.47215 * 53.76424 * 1 2 3 28 28 H 1.08997 * 109.47335 * 173.76493 * 1 2 3 29 29 H 1.08993 * 109.47193 * 240.00201 * 2 1 3 30 30 H 1.09000 * 109.46851 * 119.99396 * 2 1 3 31 31 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 32 32 H 1.00896 * 111.00211 * 330.50941 * 13 3 2 33 33 H 0.96704 * 117.00478 * 179.97438 * 18 16 14 34 34 H 1.07994 * 119.98832 * 359.94925 * 20 19 14 35 35 H 1.07992 * 119.97602 * 179.97438 * 21 20 19 36 36 H 1.08007 * 119.98164 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.02026 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6373 1.9702 -0.8646 5 6 3.5454 1.4431 -0.0675 6 1 4.1214 1.8980 0.7248 7 6 4.1877 0.8627 -1.1407 8 7 3.4863 0.3091 -2.1058 9 14 6.0538 0.8627 -1.2240 10 1 6.5787 -0.3608 -0.5663 11 1 6.4859 0.8852 -2.6445 12 1 6.5803 2.0639 -0.5274 13 7 1.6047 2.1158 1.2310 14 6 1.4972 3.5667 1.0276 15 1 2.2559 3.8910 0.3153 16 6 0.1290 3.8986 0.4903 17 8 -0.8046 3.1671 0.7212 18 8 -0.0526 5.0068 -0.2450 19 6 1.7062 4.2749 2.3414 20 6 1.5426 3.5890 3.5302 21 6 1.7348 4.2381 4.7353 22 6 2.0904 5.5742 4.7530 23 6 2.2545 6.2619 3.5659 24 6 2.0678 5.6111 2.3578 25 9 2.2339 6.2808 1.1964 26 1 -0.3634 0.4142 0.9405 27 1 -0.3634 0.6075 -0.8290 28 1 -0.3634 -1.0215 -0.1116 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.9382 -0.0989 -2.8610 32 1 0.7333 1.7318 1.5644 33 1 -0.9480 5.1775 -0.5681 34 1 1.2641 2.5457 3.5175 35 1 1.6064 3.7016 5.6637 36 1 2.2399 6.0805 5.6953 37 1 2.5319 7.3056 3.5800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:20 Heat of formation + Delta-G solvation = -111.845303 kcal Electronic energy + Delta-G solvation = -22709.760262 eV Core-core repulsion = 19173.375587 eV Total energy + Delta-G solvation = -3536.384675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.63421 -40.26444 -38.69908 -36.58362 -35.59026 -33.35002 -31.72977 -30.40688 -29.92196 -27.12845 -25.70745 -22.99745 -22.63772 -22.24767 -20.29002 -19.66628 -17.89347 -17.43342 -16.79026 -16.25127 -16.09935 -15.95719 -15.24728 -14.97726 -14.77142 -14.10716 -13.90994 -13.83148 -13.19555 -12.89382 -12.78050 -12.39201 -12.26773 -12.01159 -11.78085 -11.42313 -11.24911 -11.15245 -10.92753 -10.81924 -10.63036 -10.49358 -10.02048 -9.80836 -9.68083 -9.26175 -8.79388 -8.49331 -8.41158 -7.67479 -6.02595 -4.07722 1.23495 1.36208 2.49241 3.31041 3.33539 3.37704 3.41943 3.80325 4.38759 4.43299 4.70943 4.85701 5.08225 5.11824 5.27145 5.37474 5.53369 5.65767 5.79018 6.00490 6.18828 6.19721 6.22388 6.24329 6.43625 6.51318 6.56133 6.72699 6.87577 6.96613 7.01740 7.05711 7.32062 7.68869 7.81246 7.99238 8.19693 8.26162 8.53473 8.99475 9.57766 11.03203 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.006574 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.337864 B = 4257.984835 C = 4901.151298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.216 3.784 4 H 0.005 0.995 5 C -0.500 4.500 6 H 0.065 0.935 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.652 5.652 14 C 0.144 3.856 15 H 0.128 0.872 16 C 0.459 3.541 17 O -0.516 6.516 18 O -0.511 6.511 19 C -0.102 4.102 20 C -0.053 4.053 21 C -0.139 4.139 22 C -0.094 4.094 23 C -0.163 4.163 24 C 0.109 3.891 25 F -0.131 7.131 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.044 0.956 31 H 0.261 0.739 32 H 0.337 0.663 33 H 0.399 0.601 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 9.171 9.882 14.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.109 3.891 4 H 0.022 0.978 5 C -0.539 4.539 6 H 0.083 0.917 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.286 5.286 14 C 0.030 3.970 15 H 0.145 0.855 16 C 0.299 3.701 17 O -0.404 6.404 18 O -0.320 6.320 19 C -0.104 4.104 20 C -0.071 4.071 21 C -0.157 4.157 22 C -0.112 4.112 23 C -0.182 4.182 24 C 0.090 3.910 25 F -0.109 7.109 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.256 0.744 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.447 8.830 10.109 14.140 hybrid contribution -0.368 0.205 -1.180 1.253 sum -4.814 9.035 8.929 13.584 Atomic orbital electron populations 1.21874 0.99114 0.99619 1.00128 1.21775 0.91478 0.99681 1.03392 1.19328 0.95559 0.90275 0.83946 0.97754 1.21175 0.90481 1.36484 1.05741 0.91694 1.24957 0.98463 0.95376 0.95529 1.69877 1.35098 1.38302 1.10025 0.86510 0.85481 0.78495 0.77025 1.20689 1.21372 1.19842 1.61138 1.34711 0.97742 1.34976 1.20111 0.90516 0.92476 0.93883 0.85463 1.25115 0.93196 0.77437 0.74348 1.90649 1.43526 1.49561 1.56618 1.84683 1.38594 1.43993 1.64747 1.19614 1.03301 0.91898 0.95610 1.21021 0.95220 1.00583 0.90256 1.21213 1.01505 0.94775 0.98191 1.20974 0.98376 0.94549 0.97314 1.21037 1.05092 1.00937 0.91162 1.17604 1.01452 0.90069 0.81914 1.91527 1.92782 1.79965 1.46645 0.94062 0.94068 0.94361 0.88085 0.93705 0.92925 0.84090 0.74352 0.83948 0.85424 0.85404 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.59 37.16 0.36 -2.69 16 2 C -0.12 -2.92 5.36 -26.73 -0.14 -3.07 16 3 C 0.22 5.27 1.85 -68.86 -0.13 5.14 16 4 H 0.00 0.13 7.69 -51.93 -0.40 -0.27 16 5 C -0.50 -13.43 8.59 -34.44 -0.30 -13.73 16 6 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 7 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 8 N -0.89 -25.08 11.30 55.43 0.63 -24.45 16 9 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.65 -13.52 4.82 -103.39 -0.50 -14.02 16 14 C 0.14 2.77 2.24 -70.02 -0.16 2.61 16 15 H 0.13 2.72 7.47 -51.93 -0.39 2.33 16 16 C 0.46 8.45 7.27 36.00 0.26 8.71 16 17 O -0.52 -10.16 16.58 -18.75 -0.31 -10.47 16 18 O -0.51 -7.99 13.42 -39.26 -0.53 -8.52 16 19 C -0.10 -1.72 5.08 -104.56 -0.53 -2.25 16 20 C -0.05 -0.79 9.33 -39.59 -0.37 -1.15 16 21 C -0.14 -1.67 10.05 -39.57 -0.40 -2.06 16 22 C -0.09 -1.04 10.04 -39.59 -0.40 -1.44 16 23 C -0.16 -2.06 10.03 -39.51 -0.40 -2.46 16 24 C 0.11 1.71 7.24 -39.42 -0.29 1.43 16 25 F -0.13 -2.18 16.65 2.25 0.04 -2.15 16 26 H 0.04 0.79 6.56 -51.93 -0.34 0.45 16 27 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.10 2.65 6.00 -51.93 -0.31 2.34 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.34 6.71 4.84 -39.29 -0.19 6.52 16 33 H 0.40 4.28 9.10 45.56 0.41 4.70 16 34 H 0.14 2.13 6.89 -52.49 -0.36 1.77 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 318.85 15.07 4.80 4.80 Total: -1.00 -30.09 318.85 -7.12 -37.22 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -3.66 Total: 10.84 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -2.58 Total: -9.48 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.13 Total: -38.47 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.84 Total: -18.99 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.09 -7.12 -37.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.630 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds