Wall clock time and date at job start Tue Mar 31 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46686 * 2 1 4 4 H 1.09006 * 109.46891 * 178.34201 * 3 2 1 5 5 C 1.50696 * 109.46911 * 298.33163 * 3 2 1 6 6 H 1.08007 * 119.99581 * 114.37934 * 5 3 2 7 7 C 1.37874 * 120.00775 * 294.37872 * 5 3 2 8 8 N 1.31519 * 119.99690 * 347.10708 * 7 5 3 9 9 Si 1.86800 * 120.00563 * 167.10100 * 7 5 3 10 10 H 1.48507 * 109.46813 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47039 * 120.00330 * 9 7 5 12 12 H 1.48496 * 109.47205 * 240.00649 * 9 7 5 13 13 N 1.46899 * 109.47455 * 58.33995 * 3 2 1 14 14 C 1.46896 * 111.00432 * 80.94090 * 13 3 2 15 15 H 1.09008 * 109.46949 * 329.08790 * 14 13 3 16 16 C 1.50702 * 109.46973 * 89.08341 * 14 13 3 17 17 O 1.20830 * 119.99888 * 0.02562 * 16 14 13 18 18 O 1.34226 * 120.00266 * 179.97438 * 16 14 13 19 19 C 1.50696 * 109.47389 * 209.08472 * 14 13 3 20 20 C 1.38221 * 120.00995 * 340.00404 * 19 14 13 21 21 C 1.38223 * 120.02135 * 179.97438 * 20 19 14 22 22 C 1.38261 * 120.05549 * 0.02562 * 21 20 19 23 23 C 1.38183 * 120.02554 * 359.97438 * 22 21 20 24 24 C 1.38441 * 120.01409 * 159.72263 * 19 14 13 25 25 F 1.35103 * 120.02300 * 359.97438 * 24 19 14 26 26 H 1.08998 * 109.46719 * 185.11389 * 1 2 3 27 27 H 1.08998 * 109.47227 * 305.10800 * 1 2 3 28 28 H 1.08995 * 109.47084 * 65.11356 * 1 2 3 29 29 H 1.08992 * 109.47735 * 239.99988 * 2 1 3 30 30 H 1.08998 * 109.47093 * 119.99382 * 2 1 3 31 31 H 0.97006 * 120.00105 * 1.79250 * 8 7 5 32 32 H 1.00902 * 110.99709 * 204.89681 * 13 3 2 33 33 H 0.96700 * 117.00397 * 180.02562 * 18 16 14 34 34 H 1.07994 * 119.98929 * 359.95378 * 20 19 14 35 35 H 1.08009 * 119.97379 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.99290 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.01660 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1296 1.4428 0.0297 5 6 1.5716 2.1408 -1.2506 6 1 0.8756 2.9638 -1.1811 7 6 2.0314 1.7292 -2.4835 8 7 3.0574 0.9102 -2.5627 9 14 1.1973 2.3346 -4.0414 10 1 0.0763 3.2403 -3.6827 11 1 2.1807 3.0712 -4.8752 12 1 0.6719 1.1742 -4.8046 13 7 1.5178 2.1466 1.1788 14 6 2.3140 1.8354 2.3735 15 1 2.7136 0.8246 2.2906 16 6 3.4514 2.8173 2.4888 17 8 3.5847 3.6873 1.6610 18 8 4.3157 2.7260 3.5117 19 6 1.4410 1.9317 3.5981 20 6 0.2609 2.6498 3.5511 21 6 -0.5402 2.7378 4.6741 22 6 -0.1620 2.1085 5.8456 23 6 1.0174 1.3901 5.8949 24 6 1.8179 1.2963 4.7689 25 9 2.9682 0.5891 4.8140 26 1 -0.3633 -1.0236 0.0916 27 1 -0.3633 0.5910 0.8407 28 1 -0.3633 0.4324 -0.9322 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.4742 0.5752 -1.7534 32 1 1.4804 3.1421 1.0183 33 1 5.0288 3.3785 3.5435 34 1 -0.0352 3.1424 2.6368 35 1 -1.4620 3.2995 4.6366 36 1 -0.7885 2.1783 6.7225 37 1 1.3129 0.8989 6.8102 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:25 Heat of formation + Delta-G solvation = -113.879880 kcal Electronic energy + Delta-G solvation = -22750.941595 eV Core-core repulsion = 19214.468695 eV Total energy + Delta-G solvation = -3536.472900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.73702 -40.33401 -38.79258 -36.76262 -35.67932 -33.59841 -31.39351 -30.49060 -30.07380 -27.06811 -24.98824 -23.57073 -22.67859 -22.41491 -20.71313 -19.25672 -17.95570 -17.75294 -17.15740 -16.54146 -16.16288 -15.93576 -15.29143 -15.05988 -14.20964 -14.08564 -13.96215 -13.73010 -13.54705 -13.08666 -12.93379 -12.64990 -12.26497 -12.04406 -11.75219 -11.43753 -11.26308 -11.19211 -10.91288 -10.79915 -10.58013 -10.32416 -10.12318 -10.03788 -9.81045 -8.90076 -8.67653 -8.58160 -8.28165 -7.81384 -6.39446 -4.06839 1.14627 1.27089 2.43745 3.24420 3.44566 3.47401 3.61314 3.70852 4.31230 4.48013 4.61512 4.74164 4.94056 5.02670 5.27557 5.34943 5.37188 5.53970 5.59644 5.87708 6.10441 6.14436 6.18548 6.34655 6.42400 6.45590 6.52877 6.67645 6.84833 6.91133 6.93201 7.14757 7.36007 7.44141 7.68809 7.89148 8.10311 8.34261 8.50357 8.82842 9.61928 10.98846 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.005550 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.893323 B = 5043.447550 C = 5453.101168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 C 0.203 3.797 4 H -0.004 1.004 5 C -0.592 4.592 6 H 0.057 0.943 7 C 0.025 3.975 8 N -0.907 5.907 9 Si 1.071 2.929 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.286 1.286 13 N -0.642 5.642 14 C 0.136 3.864 15 H 0.119 0.881 16 C 0.452 3.548 17 O -0.499 6.499 18 O -0.515 6.515 19 C -0.106 4.106 20 C -0.056 4.056 21 C -0.138 4.138 22 C -0.093 4.093 23 C -0.164 4.164 24 C 0.115 3.885 25 F -0.132 7.132 26 H 0.019 0.981 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.019 0.981 31 H 0.269 0.731 32 H 0.351 0.649 33 H 0.400 0.600 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 1.814 16.332 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.147 4.147 3 C 0.096 3.904 4 H 0.014 0.986 5 C -0.630 4.630 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.543 5.543 9 Si 0.900 3.100 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.275 5.275 14 C 0.023 3.977 15 H 0.136 0.864 16 C 0.291 3.709 17 O -0.386 6.386 18 O -0.325 6.325 19 C -0.108 4.108 20 C -0.074 4.074 21 C -0.156 4.156 22 C -0.111 4.111 23 C -0.183 4.183 24 C 0.095 3.905 25 F -0.111 7.111 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.173 0.827 33 H 0.258 0.742 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.993 1.196 14.525 15.406 hybrid contribution 1.573 0.785 1.519 2.323 sum -3.420 1.981 16.044 16.524 Atomic orbital electron populations 1.21428 0.96189 0.97869 1.02315 1.21557 0.96602 0.97945 0.98604 1.19350 0.92561 0.91213 0.87298 0.98645 1.21815 1.30671 1.19270 0.91232 0.92511 1.25707 0.94935 0.95717 1.01610 1.70752 1.18616 1.32273 1.32628 0.83517 0.75530 0.75973 0.74982 1.21390 1.21609 1.21277 1.61069 1.48054 1.15520 1.02824 1.20210 0.87172 0.98059 0.92288 0.86380 1.24955 0.83000 0.85114 0.77833 1.90760 1.72640 1.34712 1.40449 1.84644 1.40778 1.58103 1.49011 1.19614 0.97700 1.00713 0.92736 1.21057 0.91935 0.95597 0.98786 1.21221 1.00459 1.01054 0.92912 1.20988 0.95509 0.96307 0.98295 1.21040 0.96209 1.03373 0.97647 1.17547 0.83680 0.94730 0.94515 1.91511 1.46785 1.75842 1.96918 0.96211 0.92768 0.92411 0.92039 0.96248 0.91963 0.82733 0.74198 0.83841 0.85390 0.85373 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 9.50 37.16 0.35 -2.16 16 2 C -0.11 -2.48 5.45 -26.73 -0.15 -2.62 16 3 C 0.20 4.93 1.73 -68.86 -0.12 4.81 16 4 H 0.00 -0.11 7.03 -51.93 -0.37 -0.47 16 5 C -0.59 -15.93 7.39 -34.44 -0.25 -16.18 16 6 H 0.06 1.54 7.77 -52.48 -0.41 1.13 16 7 C 0.03 0.71 5.13 -17.82 -0.09 0.62 16 8 N -0.91 -26.84 13.04 55.43 0.72 -26.12 16 9 Si 1.07 25.06 29.92 -169.99 -5.09 19.97 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.64 -13.03 3.72 -103.39 -0.38 -13.41 16 14 C 0.14 2.46 2.24 -70.02 -0.16 2.30 16 15 H 0.12 2.23 6.63 -51.92 -0.34 1.89 16 16 C 0.45 8.24 7.49 36.01 0.27 8.51 16 17 O -0.50 -10.72 16.46 -18.75 -0.31 -11.03 16 18 O -0.52 -7.60 12.43 -39.25 -0.49 -8.08 16 19 C -0.11 -1.64 5.05 -104.56 -0.53 -2.17 16 20 C -0.06 -0.77 9.33 -39.59 -0.37 -1.14 16 21 C -0.14 -1.55 10.04 -39.58 -0.40 -1.94 16 22 C -0.09 -0.95 10.04 -39.59 -0.40 -1.35 16 23 C -0.16 -1.90 10.03 -39.51 -0.40 -2.30 16 24 C 0.12 1.65 6.98 -39.42 -0.28 1.38 16 25 F -0.13 -2.03 15.99 2.25 0.04 -1.99 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 1.08 7.40 -51.93 -0.38 0.69 16 28 H 0.06 1.29 7.45 -51.93 -0.39 0.90 16 29 H 0.06 1.55 6.68 -51.93 -0.35 1.20 16 30 H 0.02 0.40 7.21 -51.93 -0.37 0.03 16 31 H 0.27 8.00 6.31 -40.82 -0.26 7.75 16 32 H 0.35 7.44 6.95 -39.29 -0.27 7.17 16 33 H 0.40 4.12 9.10 45.56 0.41 4.53 16 34 H 0.14 2.05 6.96 -52.49 -0.37 1.69 16 35 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 315.08 15.07 4.75 4.75 Total: -1.00 -31.41 315.08 -6.85 -38.26 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -3.58 Total: 9.91 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -2.51 Total: -12.26 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.34 Total: -39.53 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.80 Total: -19.11 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.09 Total: 19.97 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.41 -6.85 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.619 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds