Wall clock time and date at job start Tue Mar 31 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46973 * 2 1 4 4 H 1.09005 * 109.47449 * 306.14209 * 3 2 1 5 5 C 1.50710 * 109.47200 * 186.14487 * 3 2 1 6 6 H 1.08002 * 119.99783 * 242.87261 * 5 3 2 7 7 C 1.37881 * 119.99911 * 62.86941 * 5 3 2 8 8 N 1.31508 * 119.99866 * 195.39636 * 7 5 3 9 9 Si 1.86799 * 119.99880 * 15.39974 * 7 5 3 10 10 H 1.48498 * 109.47300 * 95.12580 * 9 7 5 11 11 H 1.48504 * 109.46899 * 215.12549 * 9 7 5 12 12 H 1.48507 * 109.47134 * 335.12424 * 9 7 5 13 13 N 1.46896 * 109.47077 * 66.14524 * 3 2 1 14 14 C 1.46904 * 110.99937 * 259.25569 * 13 3 2 15 15 C 1.50699 * 109.47072 * 177.55862 * 14 13 3 16 16 C 1.37848 * 119.93669 * 105.02314 * 15 14 13 17 17 C 1.39681 * 119.87551 * 180.02562 * 16 15 14 18 18 C 1.47597 * 120.12370 * 179.97438 * 17 16 15 19 19 O 1.21485 * 120.00098 * 359.97438 * 18 17 16 20 20 O 1.34732 * 120.00225 * 179.97438 * 18 17 16 21 21 C 1.39728 * 119.75472 * 359.97438 * 17 16 15 22 22 C 1.37799 * 119.87372 * 359.97438 * 21 17 16 23 23 C 1.38642 * 119.94319 * 285.00416 * 15 14 13 24 24 F 1.35100 * 119.87069 * 359.71892 * 23 15 14 25 25 H 1.08998 * 109.46989 * 296.30170 * 1 2 3 26 26 H 1.08999 * 109.47089 * 56.30689 * 1 2 3 27 27 H 1.09001 * 109.47079 * 176.30430 * 1 2 3 28 28 H 1.09004 * 109.47297 * 240.00357 * 2 1 3 29 29 H 1.08997 * 109.47433 * 120.00102 * 2 1 3 30 30 H 0.97002 * 120.00370 * 179.97438 * 8 7 5 31 31 H 1.00905 * 111.00160 * 135.30914 * 13 3 2 32 32 H 1.08997 * 109.47066 * 57.56452 * 14 13 3 33 33 H 1.09001 * 109.47054 * 297.56243 * 14 13 3 34 34 H 1.08006 * 120.05999 * 359.97438 * 16 15 14 35 35 H 0.96696 * 117.00136 * 179.97438 * 20 18 17 36 36 H 1.08000 * 120.06067 * 179.97438 * 21 17 16 37 37 H 1.07994 * 119.93586 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5896 1.9872 -0.8299 5 6 3.5393 1.4453 -0.1521 6 1 4.1613 1.8428 0.6363 7 6 4.1170 0.9403 -1.2977 8 7 5.4017 0.6601 -1.3178 9 14 3.0747 0.6542 -2.8212 10 1 3.1753 1.8332 -3.7185 11 1 3.5619 -0.5538 -3.5346 12 1 1.6582 0.4556 -2.4218 13 7 1.6751 2.0908 1.2666 14 6 0.4953 2.9497 1.0977 15 6 0.1158 3.5492 2.4272 16 6 0.3936 4.8737 2.6890 17 6 0.0418 5.4279 3.9220 18 6 0.3371 6.8454 4.2084 19 8 0.8876 7.5323 3.3711 20 8 -0.0038 7.3775 5.3983 21 6 -0.5907 4.6354 4.8833 22 6 -0.8645 3.3127 4.6104 23 6 -0.5123 2.7676 3.3847 24 9 -0.7876 1.4716 3.1205 25 1 -0.3633 0.4554 0.9213 26 1 -0.3633 0.5701 -0.8550 27 1 -0.3633 -1.0255 -0.0662 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8081 0.3045 -2.1236 31 1 2.4521 2.6137 1.6422 32 1 -0.3353 2.3554 0.7169 33 1 0.7249 3.7477 0.3916 34 1 0.8831 5.4817 1.9425 35 1 0.2104 8.3098 5.5398 36 1 -0.8646 5.0586 5.8385 37 1 -1.3537 2.6994 5.3525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:35 Heat of formation + Delta-G solvation = -113.352494 kcal Electronic energy + Delta-G solvation = -21748.420460 eV Core-core repulsion = 18211.970429 eV Total energy + Delta-G solvation = -3536.450031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.85181 -40.56472 -38.82734 -36.57553 -36.28640 -33.27274 -31.90214 -31.09417 -30.34325 -27.52949 -24.73135 -24.60767 -22.49482 -22.10921 -20.93675 -19.68722 -18.25726 -17.78704 -17.18006 -16.88135 -16.31266 -15.88295 -15.52647 -15.26089 -14.64817 -14.10198 -13.93918 -13.79001 -13.52988 -13.23238 -12.92761 -12.87171 -12.50855 -12.36737 -12.16449 -11.76881 -11.64497 -11.43957 -11.11853 -10.87250 -10.81686 -10.66164 -10.27255 -9.85280 -9.40242 -9.19903 -9.15058 -8.82126 -8.46531 -7.53584 -6.15434 -4.11236 0.42212 1.04452 2.29262 2.77022 3.25830 3.36054 3.39422 3.45791 4.12989 4.38584 4.47285 4.63045 4.81878 4.96045 5.03642 5.15568 5.36291 5.58997 5.65730 5.77875 5.92872 5.99114 6.01504 6.08536 6.09970 6.19404 6.25927 6.29724 6.62903 6.66079 6.78405 7.01510 7.04411 7.42993 7.61653 7.66541 7.90962 8.27938 8.55421 8.92494 9.50120 10.97352 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.004487 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.540104 B = 6239.433139 C = 7097.568064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C 0.193 3.807 4 H 0.005 0.995 5 C -0.535 4.535 6 H 0.076 0.924 7 C 0.079 3.921 8 N -0.889 5.889 9 Si 0.863 3.137 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.249 1.249 13 N -0.673 5.673 14 C 0.091 3.909 15 C -0.120 4.120 16 C -0.019 4.019 17 C -0.149 4.149 18 C 0.530 3.470 19 O -0.512 6.512 20 O -0.514 6.514 21 C -0.037 4.037 22 C -0.176 4.176 23 C 0.166 3.834 24 F -0.118 7.118 25 H 0.059 0.941 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.264 0.736 31 H 0.341 0.659 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.146 0.854 35 H 0.414 0.586 36 H 0.145 0.855 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.742 8.751 12.159 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C 0.084 3.916 4 H 0.023 0.977 5 C -0.573 4.573 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.690 3.310 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.173 1.173 13 N -0.304 5.304 14 C -0.038 4.038 15 C -0.121 4.121 16 C -0.038 4.038 17 C -0.150 4.150 18 C 0.375 3.625 19 O -0.401 6.401 20 O -0.326 6.326 21 C -0.055 4.055 22 C -0.194 4.194 23 C 0.145 3.855 24 F -0.096 7.096 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.160 0.840 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.164 0.836 35 H 0.273 0.727 36 H 0.162 0.838 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.895 7.841 11.952 20.645 hybrid contribution 0.167 0.924 -1.327 1.626 sum -14.729 8.765 10.625 20.166 Atomic orbital electron populations 1.21928 0.98633 0.99623 1.00786 1.21840 0.92724 0.99179 1.00797 1.19481 0.95622 0.90863 0.85608 0.97715 1.21207 0.89382 1.42361 1.04338 0.90616 1.24888 0.94763 0.94029 0.98742 1.69981 1.11621 1.42557 1.28403 0.87199 0.82500 0.77829 0.83492 1.20900 1.21231 1.17305 1.60633 1.06829 1.32691 1.30289 1.21022 0.96787 0.95799 0.90199 1.20082 1.00682 0.93330 0.98019 1.21117 0.93931 0.93694 0.95076 1.18956 1.08417 0.90743 0.96914 1.20785 0.74688 0.88064 0.78967 1.90918 1.39739 1.62247 1.47235 1.84544 1.77434 1.33558 1.37085 1.21212 0.93465 0.92334 0.98509 1.21126 1.05219 0.96436 0.96645 1.17864 0.95268 0.78786 0.93535 1.91559 1.90593 1.33429 1.94005 0.92183 0.94482 0.94618 0.93232 0.92206 0.92611 0.84039 0.89798 0.94169 0.83610 0.72750 0.83767 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.80 37.16 0.33 -2.49 16 2 C -0.11 -2.35 4.82 -26.73 -0.13 -2.48 16 3 C 0.19 4.43 1.74 -68.86 -0.12 4.31 16 4 H 0.01 0.12 6.37 -51.93 -0.33 -0.21 16 5 C -0.54 -14.64 9.04 -34.43 -0.31 -14.95 16 6 H 0.08 2.24 7.67 -52.49 -0.40 1.84 16 7 C 0.08 2.24 5.32 -17.82 -0.09 2.14 16 8 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 9 Si 0.86 20.97 25.71 -169.99 -4.37 16.60 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.25 -5.70 5.45 56.52 0.31 -5.39 16 13 N -0.67 -13.32 6.10 -109.21 -0.67 -13.98 16 14 C 0.09 1.50 4.86 -4.97 -0.02 1.47 16 15 C -0.12 -1.69 5.42 -104.62 -0.57 -2.26 16 16 C -0.02 -0.25 9.21 -39.19 -0.36 -0.61 16 17 C -0.15 -1.72 5.87 -104.98 -0.62 -2.34 16 18 C 0.53 6.03 8.27 34.55 0.29 6.31 16 19 O -0.51 -7.43 17.13 -19.25 -0.33 -7.76 16 20 O -0.51 -3.97 12.68 -40.58 -0.51 -4.48 16 21 C -0.04 -0.35 9.61 -39.19 -0.38 -0.73 16 22 C -0.18 -1.82 10.01 -39.58 -0.40 -2.21 16 23 C 0.17 2.21 7.25 -39.27 -0.28 1.92 16 24 F -0.12 -1.76 15.87 2.25 0.04 -1.72 16 25 H 0.06 1.07 5.63 -51.93 -0.29 0.77 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 1.15 4.79 -51.93 -0.25 0.90 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.34 6.93 7.94 -39.29 -0.31 6.62 16 32 H 0.08 1.37 5.83 -51.93 -0.30 1.07 16 33 H 0.04 0.65 7.93 -51.93 -0.41 0.24 16 34 H 0.15 1.93 7.59 -52.48 -0.40 1.53 16 35 H 0.41 1.38 9.11 45.56 0.42 1.79 16 36 H 0.14 1.03 7.61 -52.49 -0.40 0.63 16 37 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -31.97 312.59 -6.63 -38.60 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.60 Total: 5.94 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -2.67 Total: -11.92 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.11 Total: -39.98 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.84 Total: -12.24 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.37 Total: 16.60 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.97 -6.63 -38.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.748 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds