Wall clock time and date at job start Tue Mar 31 2020 05:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 H 1.09005 * 109.47003 * 179.82917 * 3 2 1 5 5 C 1.50699 * 109.47279 * 299.82917 * 3 2 1 6 6 H 1.07997 * 120.00027 * 120.00281 * 5 3 2 7 7 C 1.37883 * 119.99632 * 299.99539 * 5 3 2 8 8 N 1.31511 * 120.00334 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99642 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46953 * 90.00384 * 9 7 5 11 11 H 1.48500 * 109.46944 * 210.00604 * 9 7 5 12 12 H 1.48500 * 109.47305 * 330.00136 * 9 7 5 13 13 N 1.46905 * 109.47121 * 59.82952 * 3 2 1 14 14 C 1.46899 * 110.99698 * 85.90698 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.62018 * 14 13 3 16 16 C 1.37845 * 119.93703 * 104.72885 * 15 14 13 17 17 C 1.39687 * 119.87226 * 179.77197 * 16 15 14 18 18 C 1.47594 * 120.12061 * 180.22985 * 17 16 15 19 19 O 1.21490 * 120.00114 * 0.26572 * 18 17 16 20 20 O 1.34724 * 120.00220 * 180.27689 * 18 17 16 21 21 C 1.39722 * 119.75623 * 0.49993 * 17 16 15 22 22 C 1.37799 * 119.87243 * 359.75107 * 21 17 16 23 23 C 1.38644 * 119.94091 * 285.00125 * 15 14 13 24 24 F 1.35105 * 119.87443 * 0.02562 * 23 15 14 25 25 H 1.09005 * 109.46974 * 175.59088 * 1 2 3 26 26 H 1.08999 * 109.47630 * 55.59394 * 1 2 3 27 27 H 1.09007 * 109.47036 * 295.58788 * 1 2 3 28 28 H 1.08992 * 109.47588 * 120.00288 * 2 1 3 29 29 H 1.09005 * 109.47217 * 240.00429 * 2 1 3 30 30 H 0.97000 * 120.00142 * 179.97438 * 8 7 5 31 31 H 1.00892 * 110.99805 * 209.86516 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.61849 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.62526 * 14 13 3 34 34 H 1.07996 * 120.05923 * 0.02562 * 16 15 14 35 35 H 0.96699 * 117.00503 * 180.02562 * 20 18 17 36 36 H 1.07993 * 120.06358 * 179.73105 * 21 17 16 37 37 H 1.08002 * 119.93525 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 0.0031 5 6 1.5410 2.1517 -1.2326 6 1 0.9199 3.0299 -1.1361 7 6 1.8778 1.6794 -2.4834 8 7 2.6339 0.6099 -2.6009 9 14 1.2600 2.5590 -4.0113 10 1 2.2397 3.5999 -4.4134 11 1 1.0979 1.5789 -5.1151 12 1 -0.0488 3.1972 -3.7199 13 7 1.5468 2.1362 1.1974 14 6 2.4390 1.9091 2.3422 15 6 1.9618 2.7200 3.5194 16 6 1.3118 2.0990 4.5643 17 6 0.8743 2.8512 5.6570 18 6 0.1822 2.1911 6.7812 19 8 -0.0036 0.9907 6.7595 20 8 -0.2437 2.9198 7.8313 21 6 1.0892 4.2316 5.6793 22 6 1.7355 4.8426 4.6268 23 6 2.1724 4.0901 3.5468 24 9 2.8047 4.6945 2.5171 25 1 -0.3633 -1.0247 -0.0790 26 1 -0.3634 0.5807 -0.8478 27 1 -0.3633 0.4439 0.9269 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 2.8705 0.2774 -3.4809 31 1 1.4289 3.1226 1.0210 32 1 2.4326 0.8509 2.6034 33 1 3.4523 2.2123 2.0789 34 1 1.1447 1.0323 4.5401 35 1 -0.6914 2.4432 8.5437 36 1 0.7492 4.8186 6.5196 37 1 1.9019 5.9097 4.6427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:38 Heat of formation + Delta-G solvation = -118.953177 kcal Electronic energy + Delta-G solvation = -21651.372977 eV Core-core repulsion = 18114.680082 eV Total energy + Delta-G solvation = -3536.692895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.94950 -40.54541 -38.79200 -36.31770 -36.26310 -33.38150 -31.46667 -31.07878 -29.96688 -26.65694 -24.73526 -24.47269 -23.09041 -22.25541 -20.91813 -19.04771 -18.26911 -17.73537 -17.17715 -16.37745 -16.26604 -15.87456 -15.54504 -14.93810 -14.57697 -14.12470 -13.89068 -13.76568 -13.56900 -13.24845 -12.97267 -12.56819 -12.33243 -12.15151 -11.76402 -11.72372 -11.57887 -11.03921 -10.91515 -10.84603 -10.71206 -10.39566 -10.12235 -9.73018 -9.39393 -9.17062 -8.88444 -8.75548 -8.46677 -7.31396 -6.02526 -4.08013 0.42318 1.08832 2.30271 2.78568 3.29433 3.36448 3.39967 3.48489 4.10504 4.39895 4.50383 4.65466 4.84241 5.00458 5.12610 5.28457 5.48473 5.59451 5.70836 5.83487 5.94592 6.02281 6.13213 6.23738 6.36820 6.54473 6.64121 6.69101 6.85853 7.23455 7.26910 7.47593 7.68113 7.73778 7.77458 7.82646 8.22952 8.33818 8.60838 8.99589 9.56637 11.03395 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024322 B = 0.004134 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.937413 B = 6770.973462 C = 7452.159018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.003 0.997 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.678 5.678 14 C 0.095 3.905 15 C -0.111 4.111 16 C -0.010 4.010 17 C -0.147 4.147 18 C 0.531 3.469 19 O -0.511 6.511 20 O -0.514 6.514 21 C -0.040 4.040 22 C -0.170 4.170 23 C 0.143 3.857 24 F -0.125 7.125 25 H 0.014 0.986 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.010 0.990 29 H 0.088 0.912 30 H 0.261 0.739 31 H 0.332 0.668 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.148 0.852 35 H 0.414 0.586 36 H 0.145 0.855 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 6.439 17.921 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.020 0.980 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.309 5.309 14 C -0.034 4.034 15 C -0.113 4.113 16 C -0.029 4.029 17 C -0.148 4.148 18 C 0.375 3.625 19 O -0.401 6.401 20 O -0.326 6.326 21 C -0.059 4.059 22 C -0.189 4.189 23 C 0.123 3.877 24 F -0.103 7.103 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.166 0.834 35 H 0.272 0.728 36 H 0.162 0.838 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.330 5.702 17.560 18.609 hybrid contribution 0.262 0.797 -0.833 1.182 sum -2.068 6.499 16.727 18.064 Atomic orbital electron populations 1.21453 0.97466 0.97478 1.01348 1.21441 0.95087 0.98096 0.99541 1.19190 0.93088 0.91526 0.85361 0.97973 1.21158 1.31730 1.11968 0.90260 0.92304 1.24874 0.95020 0.94977 0.98904 1.69878 1.36641 1.22650 1.23538 0.86569 0.79260 0.79342 0.82686 1.20794 1.21222 1.19844 1.60885 1.47996 1.16150 1.05889 1.20905 0.94842 0.98656 0.89005 1.20129 1.00757 0.92289 0.98101 1.21064 0.91266 1.00997 0.89533 1.19004 1.06674 0.94272 0.94862 1.20780 0.75535 0.84711 0.81459 1.90917 1.54070 1.15822 1.79245 1.84545 1.71344 1.45528 1.31220 1.21197 0.94145 0.93014 0.97524 1.21088 1.02851 1.01074 0.93876 1.17996 0.93714 0.90744 0.85207 1.91565 1.78866 1.83275 1.56627 0.96723 0.92489 0.93980 0.97120 0.89416 0.92926 0.85104 0.90073 0.94396 0.83407 0.72773 0.83763 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.52 37.15 0.35 -2.36 16 2 C -0.10 -2.49 5.59 -26.73 -0.15 -2.64 16 3 C 0.22 5.31 2.30 -68.86 -0.16 5.15 16 4 H 0.00 0.07 7.72 -51.93 -0.40 -0.33 16 5 C -0.51 -13.70 7.26 -34.44 -0.25 -13.95 16 6 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.68 -14.13 5.64 -109.21 -0.62 -14.74 16 14 C 0.10 1.67 5.34 -4.97 -0.03 1.65 16 15 C -0.11 -1.65 5.40 -104.61 -0.56 -2.21 16 16 C -0.01 -0.13 9.21 -39.18 -0.36 -0.49 16 17 C -0.15 -1.74 5.87 -104.98 -0.62 -2.36 16 18 C 0.53 6.10 8.27 34.55 0.29 6.38 16 19 O -0.51 -7.43 17.13 -19.26 -0.33 -7.76 16 20 O -0.51 -4.01 12.68 -40.56 -0.51 -4.52 16 21 C -0.04 -0.40 9.61 -39.19 -0.38 -0.78 16 22 C -0.17 -1.83 10.01 -39.58 -0.40 -2.22 16 23 C 0.14 1.98 7.06 -39.26 -0.28 1.70 16 24 F -0.13 -1.94 16.35 2.25 0.04 -1.90 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 1.38 7.07 -51.93 -0.37 1.01 16 27 H 0.04 0.90 7.74 -51.93 -0.40 0.50 16 28 H 0.01 0.23 7.60 -51.93 -0.39 -0.17 16 29 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.33 6.97 7.57 -39.30 -0.30 6.67 16 32 H 0.08 1.40 7.41 -51.93 -0.38 1.01 16 33 H 0.04 0.69 7.88 -51.93 -0.41 0.28 16 34 H 0.15 2.04 7.59 -52.49 -0.40 1.64 16 35 H 0.41 1.38 9.11 45.56 0.42 1.80 16 36 H 0.14 1.07 7.61 -52.49 -0.40 0.67 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 320.20 15.07 4.83 4.83 Total: -1.00 -30.47 320.20 -7.36 -37.83 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -3.73 Total: 5.02 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -2.63 Total: -10.48 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.01 Total: -39.11 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.84 Total: -12.29 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.47 -7.36 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.126 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds