Wall clock time and date at job start Tue Mar 31 2020 05:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47143 * 2 1 4 4 N 1.46506 * 109.47155 * 184.68736 * 3 2 1 5 5 N 1.28441 * 125.19018 * 269.20950 * 4 3 2 6 6 C 1.30889 * 110.94627 * 179.81739 * 5 4 3 7 7 C 1.39643 * 107.87902 * 0.43694 * 6 5 4 8 8 C 1.36643 * 125.19395 * 89.50982 * 4 3 2 9 9 C 1.47017 * 126.89608 * 359.97438 * 8 4 3 10 10 O 1.21677 * 120.00069 * 8.45073 * 9 8 4 11 11 N 1.34779 * 120.00173 * 188.45370 * 9 8 4 12 12 C 1.36841 * 120.00108 * 187.32510 * 11 9 8 13 13 H 1.07995 * 120.00523 * 40.92297 * 12 11 9 14 14 C 1.39051 * 119.99860 * 220.93321 * 12 11 9 15 15 N 1.31370 * 120.00080 * 28.06474 * 14 12 11 16 16 Si 1.86799 * 120.00032 * 208.06955 * 14 12 11 17 17 H 1.48504 * 109.46626 * 89.99827 * 16 14 12 18 18 H 1.48502 * 109.47194 * 209.99351 * 16 14 12 19 19 H 1.48490 * 109.47144 * 329.99956 * 16 14 12 20 20 C 1.46501 * 119.99885 * 7.31700 * 11 9 8 21 21 C 1.50702 * 109.46976 * 271.32357 * 20 11 9 22 22 O 1.20823 * 120.00251 * 354.25095 * 21 20 11 23 23 O 1.34228 * 119.99430 * 174.25669 * 21 20 11 24 24 H 1.09003 * 109.47372 * 295.24922 * 1 2 3 25 25 H 1.08997 * 109.47267 * 55.24988 * 1 2 3 26 26 H 1.08998 * 109.47461 * 175.25288 * 1 2 3 27 27 H 1.09002 * 109.47100 * 120.00013 * 2 1 3 28 28 H 1.08998 * 109.47154 * 239.99907 * 2 1 3 29 29 H 1.08998 * 109.47122 * 304.68448 * 3 2 1 30 30 H 1.09001 * 109.47391 * 64.69325 * 3 2 1 31 31 H 1.08002 * 126.05911 * 180.16159 * 6 5 4 32 32 H 1.07998 * 127.32830 * 179.74899 * 7 6 5 33 33 H 0.97000 * 120.00048 * 179.97438 * 15 14 12 34 34 H 1.09005 * 109.47053 * 31.31973 * 20 11 9 35 35 H 1.08998 * 109.46927 * 151.32269 * 20 11 9 36 36 H 0.96706 * 116.99685 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5006 1.4440 -0.1129 5 7 4.3195 1.4307 0.8766 6 6 5.5596 1.4325 0.4577 7 6 5.5405 1.4586 -0.9384 8 6 4.1998 1.4657 -1.2867 9 6 3.6412 1.4909 -2.6464 10 8 2.4460 1.6488 -2.8103 11 7 4.4532 1.3389 -3.7114 12 6 3.9614 1.5111 -4.9767 13 1 3.2732 2.3173 -5.1837 14 6 4.3476 0.6479 -5.9962 15 7 4.6958 -0.5871 -5.7144 16 14 4.3715 1.2443 -7.7662 17 1 5.7073 1.8127 -8.0789 18 1 4.0931 0.1044 -8.6765 19 1 3.3332 2.2898 -7.9503 20 6 5.8622 0.9896 -3.5144 21 6 6.6746 2.2491 -3.3566 22 8 6.1519 3.3280 -3.5069 23 8 7.9789 2.1721 -3.0491 24 1 -0.3634 0.4384 0.9295 25 1 -0.3633 0.5857 -0.8443 26 1 -0.3634 -1.0241 -0.0850 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6097 1.9800 -0.8450 30 1 1.7469 1.9315 0.9290 31 1 6.4413 1.4207 1.0814 32 1 6.3903 1.4707 -1.6048 33 1 4.9649 -1.1894 -6.4256 34 1 5.9629 0.3776 -2.6180 35 1 6.2222 0.4308 -4.3782 36 1 8.4586 3.0070 -2.9586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605392113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:51 Heat of formation + Delta-G solvation = -23.075389 kcal Electronic energy + Delta-G solvation = -23062.916458 eV Core-core repulsion = 19550.301098 eV Total energy + Delta-G solvation = -3512.615361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.08913 -39.88077 -38.14485 -35.71708 -35.28620 -34.56651 -32.33650 -31.12877 -30.21822 -28.00442 -26.23444 -25.28076 -22.28856 -21.76395 -21.52529 -20.93984 -19.00583 -17.59602 -17.30586 -16.59440 -16.17348 -15.82653 -15.33718 -15.09393 -14.88505 -14.83005 -14.25362 -13.64149 -13.37934 -13.21230 -12.92192 -12.53501 -12.37107 -11.93283 -11.83357 -11.71732 -11.45274 -11.19193 -11.14604 -10.91798 -10.77162 -10.60606 -10.44193 -10.22195 -9.99950 -9.19910 -8.79903 -8.68430 -8.47101 -7.80328 -6.60939 -4.18705 1.91894 2.75484 2.90167 3.06033 3.10326 3.18882 3.24284 3.43253 3.97936 4.18162 4.56145 4.85932 4.90551 5.05246 5.23393 5.30654 5.36468 5.58712 5.64452 5.74385 5.77908 5.87580 5.91492 6.05139 6.12070 6.17922 6.31344 6.37190 6.39547 6.92043 6.95436 7.23172 7.39815 7.96829 8.20874 8.44019 8.53707 8.89860 9.05753 9.67286 10.44417 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.007429 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.407207 B = 3768.138537 C = 5046.044588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.118 3.882 4 N -0.263 5.263 5 N -0.298 5.298 6 C -0.005 4.005 7 C -0.239 4.239 8 C 0.004 3.996 9 C 0.530 3.470 10 O -0.562 6.562 11 N -0.398 5.398 12 C -0.313 4.313 13 H 0.098 0.902 14 C 0.045 3.955 15 N -0.848 5.848 16 Si 0.917 3.083 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.265 1.265 20 C 0.100 3.900 21 C 0.453 3.547 22 O -0.499 6.499 23 O -0.527 6.527 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.180 0.820 32 H 0.163 0.837 33 H 0.274 0.726 34 H 0.114 0.886 35 H 0.133 0.867 36 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 0.297 7.747 8.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C -0.002 4.002 4 N -0.049 5.049 5 N -0.130 5.130 6 C -0.182 4.182 7 C -0.268 4.268 8 C -0.126 4.126 9 C 0.319 3.681 10 O -0.445 6.445 11 N -0.117 5.117 12 C -0.440 4.440 13 H 0.115 0.885 14 C -0.163 4.163 15 N -0.483 5.483 16 Si 0.742 3.258 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.189 1.189 20 C -0.026 4.026 21 C 0.293 3.707 22 O -0.384 6.384 23 O -0.339 6.339 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.138 0.862 30 H 0.108 0.892 31 H 0.197 0.803 32 H 0.180 0.820 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.151 0.849 36 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 1.121 0.120 8.454 8.529 hybrid contribution 1.199 0.762 -1.494 2.062 sum 2.320 0.882 6.960 7.390 Atomic orbital electron populations 1.21643 0.94305 1.02292 1.02021 1.21801 0.96845 0.95465 1.03069 1.22244 0.73180 0.99568 1.05234 1.45686 1.07273 1.50116 1.01874 1.73062 1.01361 1.21406 1.17145 1.23424 0.94316 1.06436 0.93979 1.22863 0.95629 1.11889 0.96380 1.22037 0.91846 1.08662 0.90026 1.17017 0.86184 0.83096 0.81807 1.90612 1.14255 1.54341 1.85322 1.42635 1.03877 1.59924 1.05235 1.19380 1.29925 1.12941 0.81764 0.88486 1.25499 0.96497 0.93448 1.00843 1.70056 1.40441 1.02831 1.34970 0.86080 0.79266 0.78907 0.81530 1.20005 1.20709 1.18890 1.21699 0.83349 0.90752 1.06796 1.24802 0.80152 0.93606 0.72096 1.90694 1.71497 1.30767 1.45470 1.84613 1.24665 1.41552 1.83057 0.92792 0.91737 0.92198 0.91717 0.90713 0.86197 0.89212 0.80336 0.81997 0.91608 0.86849 0.84913 0.74318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.91 37.15 0.37 -1.43 16 2 C -0.13 -2.03 6.26 -26.73 -0.17 -2.20 16 3 C 0.12 1.97 5.88 -4.04 -0.02 1.95 16 4 N -0.26 -5.10 3.35 -57.14 -0.19 -5.29 16 5 N -0.30 -5.46 11.90 30.59 0.36 -5.10 16 6 C 0.00 -0.08 12.03 -17.43 -0.21 -0.29 16 7 C -0.24 -4.49 8.32 -38.95 -0.32 -4.82 16 8 C 0.00 0.08 6.75 -82.06 -0.55 -0.47 16 9 C 0.53 13.26 7.57 -12.70 -0.10 13.16 16 10 O -0.56 -15.10 14.65 5.21 0.08 -15.03 16 11 N -0.40 -10.00 1.98 -117.46 -0.23 -10.23 16 12 C -0.31 -8.44 8.73 -15.01 -0.13 -8.57 16 13 H 0.10 2.76 7.95 -52.49 -0.42 2.35 16 14 C 0.05 1.14 4.71 -17.45 -0.08 1.06 16 15 N -0.85 -21.58 12.20 55.50 0.68 -20.90 16 16 Si 0.92 19.78 29.64 -169.99 -5.04 14.74 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.26 -5.78 7.11 56.52 0.40 -5.37 16 20 C 0.10 2.13 5.12 -5.19 -0.03 2.10 16 21 C 0.45 8.83 5.79 36.01 0.21 9.04 16 22 O -0.50 -11.39 17.20 -18.75 -0.32 -11.71 16 23 O -0.53 -7.68 12.99 -39.25 -0.51 -8.19 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.12 2.22 6.20 -51.93 -0.32 1.90 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.18 2.24 8.06 -52.49 -0.42 1.81 16 32 H 0.16 2.85 3.02 -52.49 -0.16 2.69 16 33 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 34 H 0.11 2.19 5.13 -51.93 -0.27 1.93 16 35 H 0.13 2.93 6.07 -51.93 -0.31 2.61 16 36 H 0.40 3.98 9.10 45.56 0.41 4.40 16 LS Contribution 308.98 15.07 4.66 4.66 Total: -1.00 -32.22 308.98 -4.72 -36.94 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -3.16 Total: 10.59 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -1.04 Total: 9.54 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.62 Total: -41.53 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.76 Total: -34.93 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.04 Total: 14.74 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.22 -4.72 -36.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605392113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.862 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds