Wall clock time and date at job start Tue Mar 31 2020 06:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.50696 * 109.46996 * 240.00332 * 2 1 3 5 5 H 1.08000 * 119.99925 * 239.99847 * 4 2 1 6 6 C 1.37873 * 120.00616 * 59.99875 * 4 2 1 7 7 N 1.31521 * 119.99448 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00491 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46983 * 59.99694 * 8 6 4 10 10 H 1.48498 * 109.47202 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47313 * 300.00006 * 8 6 4 12 12 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 13 13 C 1.34784 * 119.99971 * 275.00026 * 12 2 1 14 14 O 1.21597 * 120.00036 * 359.72707 * 13 12 2 15 15 N 1.34771 * 119.99547 * 179.97438 * 13 12 2 16 16 C 1.40795 * 119.99614 * 179.97438 * 15 13 12 17 17 C 1.40139 * 126.11074 * 0.03179 * 16 15 13 18 18 C 1.38022 * 107.09733 * 179.97438 * 17 16 15 19 19 C 1.46465 * 126.18124 * 179.97438 * 18 17 16 20 20 O 1.21632 * 119.99928 * 359.97351 * 19 18 17 21 21 O 1.34903 * 120.00209 * 179.97438 * 19 18 17 22 22 N 1.37654 * 107.63787 * 359.97438 * 18 17 16 23 23 C 1.46507 * 125.65323 * 179.97438 * 22 18 17 24 24 C 1.35833 * 108.69689 * 359.75896 * 22 18 17 25 25 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 26 26 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 27 27 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99446 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99984 * 94.99874 * 12 2 1 30 30 H 0.96999 * 120.00409 * 0.02562 * 15 13 12 31 31 H 1.07996 * 126.45309 * 359.97438 * 17 16 15 32 32 H 0.96701 * 117.00470 * 180.02562 * 21 19 18 33 33 H 1.09003 * 109.46746 * 89.99826 * 23 22 18 34 34 H 1.08999 * 109.47252 * 210.00042 * 23 22 18 35 35 H 1.08997 * 109.46868 * 330.00513 * 23 22 18 36 36 H 1.08002 * 125.60302 * 180.24510 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4205 -5.2204 11 1 3.8063 -1.1209 -4.0082 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8626 1.1628 2.4106 15 7 2.5959 -0.6537 3.4577 16 6 2.7309 0.0488 4.6703 17 6 2.4368 1.4033 4.8773 18 6 2.7096 1.6800 6.2017 19 6 2.5496 2.9760 6.8650 20 8 2.1415 3.9344 6.2369 21 8 2.8549 3.1068 8.1725 22 7 3.1593 0.5178 6.7865 23 6 3.5620 0.3670 8.1871 24 6 3.1632 -0.4671 5.8512 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.7089 1.1615 -3.4844 29 1 2.2491 -1.6317 1.1526 30 1 2.8266 -1.5948 3.4141 31 1 2.0665 2.0996 4.1395 32 1 2.7326 3.9814 8.5666 33 1 2.6964 0.0824 8.7853 34 1 4.3268 -0.4058 8.2640 35 1 3.9622 1.3121 8.5538 36 1 3.4634 -1.4911 6.0176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609725815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:53 Heat of formation + Delta-G solvation = -64.292225 kcal Electronic energy + Delta-G solvation = -21477.443748 eV Core-core repulsion = 17963.041091 eV Total energy + Delta-G solvation = -3514.402657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.52348 -39.75682 -39.02810 -36.19956 -35.22138 -34.17061 -32.55737 -31.71344 -29.49723 -28.47508 -26.13213 -25.19664 -24.10704 -21.90145 -20.43795 -20.22180 -19.53703 -18.31183 -17.81648 -17.47603 -16.08486 -16.03516 -15.45873 -15.31596 -15.00289 -14.68596 -14.47266 -13.97460 -13.81494 -13.32952 -12.94183 -12.63820 -12.46122 -12.31996 -12.16310 -11.75169 -11.64577 -11.06833 -10.96594 -10.82845 -10.74329 -10.35006 -10.21646 -10.17579 -9.23826 -9.00139 -8.52358 -8.45532 -7.97792 -7.40784 -6.08170 -4.17338 1.18615 2.56994 2.60284 2.86501 3.19665 3.28285 3.33023 3.34170 3.46492 4.09772 4.36130 4.62840 4.77793 4.94409 5.02394 5.11930 5.24253 5.31291 5.48903 5.88032 6.04765 6.31195 6.55037 6.73836 6.88522 7.04081 7.06955 7.20033 7.28953 7.36169 7.56068 7.66883 7.81757 7.91156 8.07855 8.21064 8.79286 8.93223 9.34618 9.52138 10.97868 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035133 B = 0.003351 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.783027 B = 8354.527876 C = 8865.063040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.721 5.721 13 C 0.695 3.305 14 O -0.581 6.581 15 N -0.673 5.673 16 C 0.093 3.907 17 C -0.087 4.087 18 C -0.048 4.048 19 C 0.555 3.445 20 O -0.501 6.501 21 O -0.524 6.524 22 N -0.422 5.422 23 C 0.074 3.926 24 C -0.016 4.016 25 H 0.016 0.984 26 H 0.090 0.910 27 H 0.025 0.975 28 H 0.265 0.735 29 H 0.385 0.615 30 H 0.401 0.599 31 H 0.180 0.820 32 H 0.412 0.588 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.521 -4.230 21.810 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.372 5.372 13 C 0.395 3.605 14 O -0.458 6.458 15 N -0.321 5.321 16 C -0.009 4.009 17 C -0.116 4.116 18 C -0.158 4.158 19 C 0.400 3.600 20 O -0.388 6.388 21 O -0.337 6.337 22 N -0.100 5.100 23 C -0.067 4.067 24 C -0.154 4.154 25 H 0.035 0.965 26 H 0.108 0.892 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.217 0.783 30 H 0.235 0.765 31 H 0.197 0.803 32 H 0.271 0.729 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.174 -3.129 21.602 22.432 hybrid contribution 0.463 -0.992 -0.584 1.240 sum 5.637 -4.120 21.018 22.148 Atomic orbital electron populations 1.22105 0.98591 0.99023 1.00965 1.18662 0.90811 0.93802 0.78815 0.93202 1.21175 1.32521 1.13257 0.90307 0.92155 1.24880 0.94858 0.94978 0.98999 1.69904 1.35764 1.22355 1.23975 0.86496 0.79131 0.79526 0.81840 1.20219 1.21153 1.20205 1.45811 1.69007 1.13250 1.09158 1.16092 0.78795 0.85387 0.80230 1.90807 1.56907 1.14186 1.83925 1.42179 1.70044 1.12843 1.07042 1.16653 1.06269 0.92366 0.85597 1.21884 1.01151 0.95632 0.92945 1.19248 1.17808 0.85186 0.93521 1.19453 0.74052 0.87227 0.79269 1.90996 1.43030 1.39267 1.65543 1.84604 1.81554 1.41342 1.26218 1.43608 1.49519 1.07510 1.09329 1.22184 1.01259 1.04769 0.78453 1.21244 1.11890 0.94493 0.87728 0.96505 0.89159 0.95589 0.92511 0.78284 0.76457 0.80291 0.72943 0.90787 0.89853 0.88424 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 2 C 0.28 7.24 2.56 -69.08 -0.18 7.07 16 3 H 0.05 1.49 7.57 -51.93 -0.39 1.10 16 4 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.72 -15.10 5.07 -59.81 -0.30 -15.41 16 13 C 0.69 14.39 8.50 -86.92 -0.74 13.65 16 14 O -0.58 -14.40 13.18 5.28 0.07 -14.33 16 15 N -0.67 -10.43 5.48 -14.39 -0.08 -10.51 16 16 C 0.09 1.42 6.91 -83.85 -0.58 0.84 16 17 C -0.09 -1.54 9.44 -38.95 -0.37 -1.90 16 18 C -0.05 -0.70 6.88 -82.02 -0.56 -1.26 16 19 C 0.56 7.54 8.29 34.04 0.28 7.83 16 20 O -0.50 -8.64 17.67 -19.37 -0.34 -8.98 16 21 O -0.52 -4.44 10.85 -41.05 -0.45 -4.88 16 22 N -0.42 -4.66 3.17 -120.04 -0.38 -5.04 16 23 C 0.07 0.48 10.56 59.85 0.63 1.12 16 24 C -0.02 -0.18 11.42 -16.61 -0.19 -0.37 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.39 6.79 8.55 -40.82 -0.35 6.44 16 30 H 0.40 4.57 8.84 -40.82 -0.36 4.21 16 31 H 0.18 3.81 5.97 -52.49 -0.31 3.50 16 32 H 0.41 1.67 9.11 45.56 0.42 2.08 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.62 6.14 -51.93 -0.32 0.30 16 36 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 314.38 15.07 4.74 4.74 Total: -1.00 -35.57 314.38 -6.18 -41.75 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -3.29 Total: 10.73 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: -1.75 Total: 10.74 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.14 Total: -55.44 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.72 Total: -28.20 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.57 -6.18 -41.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609725815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.544 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds