Wall clock time and date at job start Tue Mar 31 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.34771 * 120.00694 * 84.99510 * 12 2 1 14 14 O 1.21602 * 119.99533 * 0.02562 * 13 12 2 15 15 N 1.34768 * 120.00545 * 180.02562 * 13 12 2 16 16 C 1.40789 * 120.00220 * 180.02562 * 15 13 12 17 17 C 1.40138 * 126.11501 * 0.02614 * 16 15 13 18 18 C 1.38023 * 107.10467 * 179.97438 * 17 16 15 19 19 C 1.46463 * 126.18025 * 180.02562 * 18 17 16 20 20 O 1.21620 * 120.00303 * 359.96723 * 19 18 17 21 21 O 1.34907 * 119.99638 * 179.97438 * 19 18 17 22 22 N 1.37663 * 107.63287 * 359.97438 * 18 17 16 23 23 C 1.46503 * 125.64829 * 180.02562 * 22 18 17 24 24 C 1.35831 * 108.69762 * 359.77192 * 22 18 17 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99940 * 265.00592 * 12 2 1 30 30 H 0.97002 * 120.00208 * 0.02562 * 15 13 12 31 31 H 1.08002 * 126.45036 * 359.97438 * 17 16 15 32 32 H 0.96704 * 116.99655 * 179.97438 * 21 19 18 33 33 H 1.09000 * 109.46973 * 89.99474 * 23 22 18 34 34 H 1.08996 * 109.46696 * 209.99539 * 23 22 18 35 35 H 1.09002 * 109.46687 * 330.00251 * 23 22 18 36 36 H 1.07995 * 125.60187 * 180.23329 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 7 2.0183 -0.6904 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8582 1.1618 -2.4116 15 7 2.5958 -0.6535 -3.4577 16 6 2.7307 0.0491 -4.6703 17 6 2.4377 1.4038 -4.8771 18 6 2.7111 1.6808 -6.2013 19 6 2.5521 2.9771 -6.8641 20 8 2.1435 3.9352 -6.2362 21 8 2.8589 3.1084 -8.1713 22 7 3.1612 0.5187 -6.7861 23 6 3.5646 0.3681 -8.1864 24 6 3.1747 -0.4638 -5.8483 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7006 1.1552 3.4844 29 1 2.2490 -1.6317 -1.1528 30 1 2.8258 -1.5948 -3.4145 31 1 2.0675 2.1001 -4.1391 32 1 2.7373 3.9832 -8.5650 33 1 4.6299 0.5782 -8.2822 34 1 3.3644 -0.6518 -8.5145 35 1 2.9997 1.0662 -8.8042 36 1 3.4845 -1.4853 -6.0123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609725816.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:57 Heat of formation + Delta-G solvation = -64.338066 kcal Electronic energy + Delta-G solvation = -21477.679727 eV Core-core repulsion = 17963.275082 eV Total energy + Delta-G solvation = -3514.404645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.52289 -39.75802 -39.02876 -36.20058 -35.22355 -34.17068 -32.55968 -31.71456 -29.49721 -28.47535 -26.13193 -25.20066 -24.10689 -21.90269 -20.43791 -20.22344 -19.53724 -18.31182 -17.81672 -17.47644 -16.08881 -16.03552 -15.46225 -15.31904 -15.00536 -14.67971 -14.47213 -13.98023 -13.81543 -13.31555 -12.94989 -12.63855 -12.45658 -12.33004 -12.16438 -11.75225 -11.65413 -11.05884 -10.98770 -10.83185 -10.72853 -10.34483 -10.20881 -10.17908 -9.23929 -8.98809 -8.52890 -8.45643 -7.97894 -7.40786 -6.08642 -4.17620 1.18617 2.56995 2.60255 2.86531 3.19670 3.26268 3.33237 3.35901 3.46657 4.09750 4.35902 4.62776 4.77779 4.94396 5.02477 5.11929 5.24019 5.31252 5.48857 5.88031 6.04752 6.31170 6.54986 6.73810 6.88400 7.04094 7.06961 7.20077 7.28917 7.36113 7.55993 7.67161 7.81744 7.90958 8.07766 8.20927 8.79508 8.93131 9.34578 9.52025 10.97441 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035170 B = 0.003350 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.952926 B = 8356.004526 C = 8867.457764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.721 5.721 13 C 0.695 3.305 14 O -0.581 6.581 15 N -0.673 5.673 16 C 0.093 3.907 17 C -0.087 4.087 18 C -0.048 4.048 19 C 0.555 3.445 20 O -0.501 6.501 21 O -0.524 6.524 22 N -0.422 5.422 23 C 0.074 3.926 24 C -0.016 4.016 25 H 0.016 0.984 26 H 0.025 0.975 27 H 0.090 0.910 28 H 0.264 0.736 29 H 0.385 0.615 30 H 0.401 0.599 31 H 0.180 0.820 32 H 0.412 0.588 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.417 -4.270 -21.862 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.372 5.372 13 C 0.395 3.605 14 O -0.458 6.458 15 N -0.321 5.321 16 C -0.009 4.009 17 C -0.116 4.116 18 C -0.158 4.158 19 C 0.400 3.600 20 O -0.388 6.388 21 O -0.337 6.337 22 N -0.100 5.100 23 C -0.067 4.067 24 C -0.154 4.154 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.217 0.783 30 H 0.235 0.765 31 H 0.197 0.803 32 H 0.271 0.729 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.068 -3.178 -21.661 22.471 hybrid contribution 0.490 -0.966 0.605 1.240 sum 5.558 -4.144 -21.056 22.168 Atomic orbital electron populations 1.22106 0.98582 0.99027 1.00988 1.18675 0.90824 0.93815 0.78843 0.93203 1.21251 1.32290 1.13283 0.90276 0.92048 1.24883 0.94857 0.94994 0.99024 1.69916 1.35832 1.22483 1.23754 0.86388 0.78539 0.79499 0.82603 1.19789 1.20894 1.20925 1.45810 1.68992 1.13242 1.09174 1.16090 0.78803 0.85381 0.80232 1.90809 1.56798 1.14301 1.83929 1.42177 1.70085 1.12822 1.07020 1.16653 1.06122 0.92425 0.85686 1.21885 1.01161 0.95567 0.92999 1.19251 1.17834 0.85114 0.93572 1.19450 0.74049 0.87233 0.79265 1.90992 1.43040 1.39313 1.65482 1.84607 1.81672 1.41240 1.26203 1.43609 1.49447 1.07656 1.09252 1.22184 1.01822 1.03992 0.78669 1.21245 1.11638 0.94698 0.87772 0.96493 0.95593 0.89134 0.92625 0.78281 0.76457 0.80292 0.72946 0.90780 0.89858 0.88424 0.81061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.41 16 2 C 0.28 7.22 2.56 -69.08 -0.18 7.04 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 4 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.08 11.31 55.43 0.63 -24.45 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.72 -15.09 5.07 -59.81 -0.30 -15.40 16 13 C 0.69 14.38 8.50 -86.93 -0.74 13.65 16 14 O -0.58 -14.40 13.18 5.28 0.07 -14.33 16 15 N -0.67 -10.43 5.48 -14.39 -0.08 -10.51 16 16 C 0.09 1.42 6.91 -83.85 -0.58 0.84 16 17 C -0.09 -1.54 9.44 -38.95 -0.37 -1.90 16 18 C -0.05 -0.70 6.88 -82.01 -0.56 -1.26 16 19 C 0.56 7.54 8.29 34.04 0.28 7.82 16 20 O -0.50 -8.64 17.67 -19.36 -0.34 -8.98 16 21 O -0.52 -4.44 10.85 -41.06 -0.45 -4.88 16 22 N -0.42 -4.66 3.17 -120.04 -0.38 -5.04 16 23 C 0.07 0.48 10.56 59.85 0.63 1.12 16 24 C -0.02 -0.18 11.42 -16.61 -0.19 -0.37 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.48 6.06 -51.93 -0.31 2.17 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.39 6.79 8.55 -40.82 -0.35 6.45 16 30 H 0.40 4.57 8.84 -40.82 -0.36 4.21 16 31 H 0.18 3.81 5.97 -52.49 -0.31 3.50 16 32 H 0.41 1.67 9.11 45.56 0.42 2.08 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 0.62 6.14 -51.93 -0.32 0.30 16 36 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -35.59 314.35 -6.18 -41.77 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -3.29 Total: 10.67 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -1.75 Total: 10.74 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.14 Total: -55.40 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.72 Total: -28.19 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.59 -6.18 -41.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609725816.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.572 kcal (2) G-P(sol) polarization free energy of solvation -35.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds