Wall clock time and date at job start Tue Mar 31 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47483 * 2 1 4 4 H 1.09006 * 109.47056 * 305.00727 * 3 2 1 5 5 C 1.50701 * 109.46646 * 65.00236 * 3 2 1 6 6 O 1.20832 * 119.99841 * 120.00368 * 5 3 2 7 7 O 1.34232 * 120.00170 * 299.99965 * 5 3 2 8 8 C 1.50696 * 109.47220 * 185.00291 * 3 2 1 9 9 O 1.21290 * 120.00012 * 0.02562 * 8 3 2 10 10 N 1.34777 * 119.99736 * 179.97438 * 8 3 2 11 11 C 1.40159 * 119.99983 * 179.97438 * 10 8 3 12 12 C 1.40409 * 125.97033 * 0.02562 * 11 10 8 13 13 C 1.35241 * 107.86602 * 179.73843 * 12 11 10 14 14 N 1.34966 * 107.86079 * 0.39163 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.87198 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97718 * 179.97438 * 11 10 8 25 25 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46919 * 299.99450 * 1 2 3 27 27 H 1.08996 * 109.47462 * 59.99739 * 1 2 3 28 28 H 1.09000 * 109.46530 * 239.99889 * 2 1 3 29 29 H 1.09003 * 109.46904 * 120.00612 * 2 1 3 30 30 H 0.96704 * 116.99740 * 180.02562 * 7 5 3 31 31 H 0.97003 * 120.00166 * 0.02562 * 10 8 3 32 32 H 1.08002 * 126.06850 * 0.02562 * 12 11 10 33 33 H 1.08003 * 126.07024 * 180.26845 * 13 12 11 34 34 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 35 35 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 36 36 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6414 2.1161 1.2878 6 8 2.4899 2.5529 2.0289 7 8 0.3438 2.2310 1.6114 8 6 3.5419 1.4442 -0.1239 9 8 4.1450 0.3949 -0.2048 10 7 4.2149 2.6117 -0.1459 11 6 5.6118 2.6134 -0.2606 12 6 6.4324 1.4784 -0.3609 13 6 7.7135 1.9002 -0.4598 14 7 7.7099 3.2491 -0.4152 15 6 8.8887 4.1159 -0.4879 16 6 8.7179 5.1030 -1.6137 17 1 7.8207 5.0866 -2.2147 18 6 9.7069 6.0269 -1.8766 19 7 10.7971 6.0503 -1.1413 20 14 9.4948 7.2510 -3.2716 21 1 10.6872 8.1334 -3.3416 22 1 9.3454 6.5182 -4.5546 23 1 8.2833 8.0743 -3.0278 24 7 6.3812 3.6757 -0.2940 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.1372 2.6711 2.4474 31 1 3.7325 3.4508 -0.0816 32 1 6.0992 0.4511 -0.3636 33 1 8.5850 1.2695 -0.5553 34 1 9.7756 3.5085 -0.6687 35 1 9.0026 4.6540 0.4531 36 1 10.9072 5.4149 -0.4167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609890505.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:27 Heat of formation + Delta-G solvation = -51.666394 kcal Electronic energy + Delta-G solvation = -21546.795032 eV Core-core repulsion = 18032.939872 eV Total energy + Delta-G solvation = -3513.855160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32105 -40.49019 -39.19021 -36.55138 -35.18016 -34.68568 -33.66803 -31.00281 -29.42453 -29.00062 -26.23788 -23.79812 -23.38342 -22.47666 -21.03098 -20.16772 -19.59957 -18.54479 -17.57622 -17.18773 -17.04976 -16.67823 -15.93437 -15.27590 -14.81810 -14.44274 -14.25241 -13.97361 -13.78625 -13.63427 -13.22635 -13.00365 -12.45601 -12.26055 -12.13746 -12.07892 -11.83233 -11.49534 -11.24249 -11.15895 -10.83374 -10.80796 -10.47977 -10.16197 -10.11948 -9.73495 -9.00385 -8.58187 -8.21105 -7.53727 -6.58149 -4.32150 1.75141 1.92270 2.56055 2.69033 2.94104 3.37522 3.39596 3.57977 3.66313 3.67727 4.17340 4.38805 4.42146 4.60658 4.79111 5.03612 5.08883 5.15780 5.39018 5.46484 5.69155 5.70255 5.77121 6.05490 6.07100 6.15760 6.38990 6.47473 6.57554 6.75220 7.30202 7.41870 7.45680 7.68886 7.82975 8.07205 8.34059 8.53495 8.61873 9.36145 10.79503 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029249 B = 0.003459 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.072517 B = 8091.798283 C = 8402.565318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 C -0.099 4.099 4 H 0.139 0.861 5 C 0.486 3.514 6 O -0.496 6.496 7 O -0.505 6.505 8 C 0.537 3.463 9 O -0.505 6.505 10 N -0.616 5.616 11 C 0.260 3.740 12 C -0.284 4.284 13 C 0.051 3.949 14 N -0.316 5.316 15 C 0.249 3.751 16 C -0.608 4.608 17 H 0.063 0.937 18 C 0.023 3.977 19 N -0.905 5.905 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.285 1.285 24 N -0.299 5.299 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.411 0.589 31 H 0.411 0.589 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.886 -10.425 2.820 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.139 4.139 3 C -0.121 4.121 4 H 0.156 0.844 5 C 0.327 3.673 6 O -0.382 6.382 7 O -0.318 6.318 8 C 0.321 3.679 9 O -0.378 6.378 10 N -0.262 5.262 11 C 0.007 3.993 12 C -0.316 4.316 13 C -0.099 4.099 14 N -0.098 5.098 15 C 0.131 3.869 16 C -0.646 4.646 17 H 0.082 0.918 18 C -0.182 4.182 19 N -0.540 5.540 20 Si 0.904 3.096 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.211 1.211 24 N -0.130 5.130 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.271 0.729 31 H 0.246 0.754 32 H 0.179 0.821 33 H 0.186 0.814 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.227 -8.641 1.865 21.162 hybrid contribution -1.077 -1.310 1.386 2.190 sum -20.305 -9.951 3.250 22.844 Atomic orbital electron populations 1.22021 0.94097 1.02398 1.03488 1.21345 0.96533 0.90885 1.05099 1.21357 0.93848 1.01105 0.95839 0.84361 1.22856 0.80525 0.76400 0.87554 1.90875 1.51399 1.44759 1.51173 1.84573 1.27461 1.74092 1.45641 1.19627 0.87947 0.83472 0.76843 1.90671 1.68335 1.31043 1.47715 1.42297 1.03595 1.09482 1.70823 1.19058 0.83716 0.93316 1.03227 1.21509 0.90676 0.99769 1.19611 1.22561 0.99142 0.85711 1.02455 1.48800 1.04907 1.04504 1.51593 1.19770 0.78484 0.89612 0.99055 1.22104 1.07526 1.18385 1.16634 0.91833 1.25931 0.92201 0.98515 1.01547 1.70849 1.27060 1.37184 1.18926 0.83414 0.76084 0.75586 0.74500 1.20515 1.21228 1.21141 1.77364 0.88278 1.19915 1.27428 0.92060 0.90497 0.92317 0.89030 0.90530 0.72913 0.75364 0.82147 0.81420 0.93572 0.94735 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.55 37.16 0.35 -0.61 16 2 C -0.10 -0.82 4.74 -26.73 -0.13 -0.94 16 3 C -0.10 -0.92 2.66 -92.93 -0.25 -1.17 16 4 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 5 C 0.49 4.64 7.47 36.01 0.27 4.91 16 6 O -0.50 -6.82 16.15 -18.75 -0.30 -7.12 16 7 O -0.50 -2.95 10.57 -39.26 -0.41 -3.37 16 8 C 0.54 7.71 6.62 -10.99 -0.07 7.64 16 9 O -0.50 -8.52 13.05 5.55 0.07 -8.45 16 10 N -0.62 -10.09 4.84 -11.13 -0.05 -10.14 16 11 C 0.26 5.43 8.11 -154.39 -1.25 4.18 16 12 C -0.28 -5.77 9.61 -39.83 -0.38 -6.15 16 13 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 14 N -0.32 -7.57 3.67 -62.56 -0.23 -7.80 16 15 C 0.25 6.41 5.57 -5.19 -0.03 6.38 16 16 C -0.61 -17.30 9.24 -34.44 -0.32 -17.62 16 17 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 18 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 19 N -0.90 -26.56 13.65 55.43 0.76 -25.81 16 20 Si 1.08 25.04 29.90 -169.99 -5.08 19.96 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 24 N -0.30 -7.17 12.42 31.44 0.39 -6.78 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.46 5.46 -51.93 -0.28 0.18 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.76 7.95 -51.93 -0.41 0.35 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.41 0.90 9.10 45.56 0.41 1.32 16 31 H 0.41 5.86 8.51 -40.82 -0.35 5.51 16 32 H 0.16 3.10 5.92 -52.49 -0.31 2.78 16 33 H 0.17 2.78 8.06 -52.48 -0.42 2.35 16 34 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 35 H 0.03 0.93 8.00 -51.93 -0.42 0.51 16 36 H 0.27 7.68 7.22 -40.82 -0.29 7.38 16 LS Contribution 314.58 15.07 4.74 4.74 Total: -1.00 -36.09 314.58 -5.60 -41.69 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.38 Total: 5.07 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.10 Total: -1.99 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.86 Total: -50.53 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.65 Total: -18.94 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.09 -5.60 -41.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609890505.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.973 kcal (2) G-P(sol) polarization free energy of solvation -36.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds