Wall clock time and date at job start Tue Mar 31 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47483 * 2 1 4 4 H 1.09006 * 109.47056 * 305.00727 * 3 2 1 5 5 C 1.50701 * 109.46646 * 65.00236 * 3 2 1 6 6 O 1.20832 * 119.99841 * 120.00368 * 5 3 2 7 7 O 1.34232 * 120.00170 * 299.99965 * 5 3 2 8 8 C 1.50696 * 109.47220 * 185.00291 * 3 2 1 9 9 O 1.21290 * 120.00012 * 0.02562 * 8 3 2 10 10 N 1.34777 * 119.99736 * 179.97438 * 8 3 2 11 11 C 1.40159 * 119.99983 * 179.97438 * 10 8 3 12 12 C 1.40409 * 125.97033 * 0.02562 * 11 10 8 13 13 C 1.35241 * 107.86602 * 179.73843 * 12 11 10 14 14 N 1.34966 * 107.86079 * 0.39163 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.87198 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97718 * 179.97438 * 11 10 8 25 25 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46919 * 299.99450 * 1 2 3 27 27 H 1.08996 * 109.47462 * 59.99739 * 1 2 3 28 28 H 1.09000 * 109.46530 * 239.99889 * 2 1 3 29 29 H 1.09003 * 109.46904 * 120.00612 * 2 1 3 30 30 H 0.96704 * 116.99740 * 180.02562 * 7 5 3 31 31 H 0.97003 * 120.00166 * 0.02562 * 10 8 3 32 32 H 1.08002 * 126.06850 * 0.02562 * 12 11 10 33 33 H 1.08003 * 126.07024 * 180.26845 * 13 12 11 34 34 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 35 35 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 36 36 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6414 2.1161 1.2878 6 8 2.4899 2.5529 2.0289 7 8 0.3438 2.2310 1.6114 8 6 3.5419 1.4442 -0.1239 9 8 4.1450 0.3949 -0.2048 10 7 4.2149 2.6117 -0.1459 11 6 5.6118 2.6134 -0.2606 12 6 6.4324 1.4784 -0.3609 13 6 7.7135 1.9002 -0.4598 14 7 7.7099 3.2491 -0.4152 15 6 8.8887 4.1159 -0.4879 16 6 8.7179 5.1030 -1.6137 17 1 7.8207 5.0866 -2.2147 18 6 9.7069 6.0269 -1.8766 19 7 10.7971 6.0503 -1.1413 20 14 9.4948 7.2510 -3.2716 21 1 10.6872 8.1334 -3.3416 22 1 9.3454 6.5182 -4.5546 23 1 8.2833 8.0743 -3.0278 24 7 6.3812 3.6757 -0.2940 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.1372 2.6711 2.4474 31 1 3.7325 3.4508 -0.0816 32 1 6.0992 0.4511 -0.3636 33 1 8.5850 1.2695 -0.5553 34 1 9.7756 3.5085 -0.6687 35 1 9.0026 4.6540 0.4531 36 1 10.9072 5.4149 -0.4167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609890505.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:26 Heat of formation + Delta-G solvation = -77.651501 kcal Electronic energy + Delta-G solvation = -21547.921831 eV Core-core repulsion = 18032.939872 eV Total energy + Delta-G solvation = -3514.981958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.50921 -41.77340 -40.34413 -37.26986 -36.56023 -35.61902 -35.56034 -32.77313 -31.08257 -29.87319 -28.10206 -25.31097 -24.41297 -23.73722 -22.43511 -21.52300 -20.86602 -19.28472 -19.23728 -18.54408 -18.21115 -17.98816 -16.95510 -16.73479 -16.27258 -15.69969 -15.62969 -15.44871 -15.02931 -14.86488 -14.32971 -14.20260 -13.95704 -13.74842 -13.63294 -13.25996 -12.80732 -12.73659 -12.61924 -12.10165 -12.07080 -11.95679 -11.86629 -11.69981 -11.55112 -11.09331 -11.02536 -10.70759 -9.88226 -9.25689 -8.79815 -6.57851 0.70347 1.01639 1.18922 1.23678 1.50520 1.57236 1.78861 1.87205 2.17761 2.27392 2.48282 2.99735 3.16830 3.61659 3.83077 3.94506 4.10318 4.16857 4.46508 4.51986 4.52857 4.67882 4.74980 4.78651 4.87897 5.02363 5.18407 5.25503 5.49685 5.52776 5.59008 5.77149 5.89668 6.07528 6.24224 6.39168 6.80453 6.86758 6.94564 7.18253 8.56619 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029249 B = 0.003459 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.072517 B = 8091.798283 C = 8402.565318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.098 4.098 3 C -0.090 4.090 4 H 0.177 0.823 5 C 0.498 3.502 6 O -0.544 6.544 7 O -0.486 6.486 8 C 0.535 3.465 9 O -0.531 6.531 10 N -0.616 5.616 11 C 0.266 3.734 12 C -0.290 4.290 13 C 0.056 3.944 14 N -0.343 5.343 15 C 0.259 3.741 16 C -0.623 4.623 17 H 0.046 0.954 18 C -0.019 4.019 19 N -0.923 5.923 20 Si 1.121 2.879 21 H -0.275 1.275 22 H -0.269 1.269 23 H -0.275 1.275 24 N -0.346 5.346 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.431 0.569 31 H 0.420 0.580 32 H 0.172 0.828 33 H 0.204 0.796 34 H 0.056 0.944 35 H 0.015 0.985 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.076 -10.982 1.967 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.136 4.136 3 C -0.112 4.112 4 H 0.194 0.806 5 C 0.341 3.659 6 O -0.434 6.434 7 O -0.300 6.300 8 C 0.321 3.679 9 O -0.405 6.405 10 N -0.263 5.263 11 C 0.012 3.988 12 C -0.321 4.321 13 C -0.092 4.092 14 N -0.124 5.124 15 C 0.140 3.860 16 C -0.661 4.661 17 H 0.064 0.936 18 C -0.219 4.219 19 N -0.559 5.559 20 Si 0.942 3.058 21 H -0.200 1.200 22 H -0.195 1.195 23 H -0.201 1.201 24 N -0.177 5.177 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.294 0.706 31 H 0.257 0.743 32 H 0.190 0.810 33 H 0.221 0.779 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.489 -9.230 1.034 23.410 hybrid contribution -0.548 -1.264 1.720 2.204 sum -22.037 -10.494 2.755 24.563 Atomic orbital electron populations 1.21986 0.91963 1.03203 1.04195 1.21364 0.98177 0.89639 1.04377 1.21394 0.89805 1.02636 0.97378 0.80571 1.22755 0.81050 0.75238 0.86880 1.90878 1.52886 1.47056 1.52627 1.84519 1.24968 1.73664 1.46865 1.20572 0.89969 0.82265 0.75087 1.90641 1.69582 1.31788 1.48522 1.42545 1.01839 1.10915 1.71039 1.19475 0.85652 0.92807 1.00910 1.21742 0.90629 1.00104 1.19651 1.23214 1.00678 0.84705 1.00577 1.48594 1.04550 1.05386 1.53902 1.19439 0.79782 0.89623 0.97196 1.22294 1.06973 1.19527 1.17287 0.93561 1.27324 0.91516 0.99906 1.03127 1.70946 1.27888 1.37592 1.19488 0.82869 0.76501 0.73963 0.72506 1.19958 1.19456 1.20083 1.77274 0.88731 1.21716 1.30000 0.91305 0.90344 0.90968 0.89175 0.91995 0.70633 0.74320 0.81043 0.77887 0.92656 0.96741 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.55 71.98 0.69 -0.66 16 2 C -0.10 -1.36 4.74 30.59 0.14 -1.22 16 3 C -0.09 -1.47 2.66 -12.29 -0.03 -1.50 16 4 H 0.18 1.55 8.14 -2.38 -0.02 1.53 16 5 C 0.50 8.49 7.47 71.24 0.53 9.02 16 6 O -0.54 -14.53 16.15 21.94 0.35 -14.18 16 7 O -0.49 -4.16 10.57 -51.43 -0.54 -4.70 16 8 C 0.53 14.76 6.62 87.66 0.58 15.34 16 9 O -0.53 -17.53 13.05 -3.06 -0.04 -17.57 16 10 N -0.62 -19.89 4.84 -307.52 -1.49 -21.38 16 11 C 0.27 11.17 8.11 133.32 1.08 12.25 16 12 C -0.29 -11.67 9.61 22.11 0.21 -11.46 16 13 C 0.06 2.29 11.44 83.52 0.96 3.24 16 14 N -0.34 -16.66 3.67 -351.83 -1.29 -17.95 16 15 C 0.26 13.65 5.57 85.64 0.48 14.13 16 16 C -0.62 -36.03 9.24 25.60 0.24 -35.79 16 17 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 18 C -0.02 -1.09 5.46 84.65 0.46 -0.62 16 19 N -0.92 -54.63 13.65 21.45 0.29 -54.34 16 20 Si 1.12 50.02 29.90 68.60 2.05 52.07 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 24 N -0.35 -16.94 12.42 -54.45 -0.68 -17.62 16 25 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 26 H 0.08 0.66 5.46 -2.39 -0.01 0.65 16 27 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.09 1.31 7.95 -2.39 -0.02 1.29 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.43 0.58 9.10 -74.05 -0.67 -0.09 16 31 H 0.42 11.79 8.51 -92.71 -0.79 11.00 16 32 H 0.17 6.49 5.92 -2.91 -0.02 6.47 16 33 H 0.20 6.42 8.06 -2.91 -0.02 6.39 16 34 H 0.06 2.78 7.94 -2.39 -0.02 2.76 16 35 H 0.01 0.82 8.00 -2.39 -0.02 0.80 16 36 H 0.26 15.27 7.22 -92.71 -0.67 14.60 16 Total: -1.00 -79.36 314.58 3.77 -75.58 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -0.22 Total: 17.34 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.34 Total: 2.75 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -3.16 Total: -111.29 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.23 Total: -36.46 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.07 kcal Total: -79.36 3.77 -75.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609890505.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.069 kcal (2) G-P(sol) polarization free energy of solvation -79.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds