Wall clock time and date at job start Tue Mar 31 2020 05:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47361 * 2 1 4 4 H 1.09001 * 109.46879 * 55.00059 * 3 2 1 5 5 C 1.50703 * 109.47242 * 295.00680 * 3 2 1 6 6 O 1.20830 * 119.99824 * 240.00241 * 5 3 2 7 7 O 1.34231 * 120.00235 * 59.99384 * 5 3 2 8 8 C 1.50696 * 109.47220 * 175.00199 * 3 2 1 9 9 O 1.21290 * 120.00012 * 0.02562 * 8 3 2 10 10 N 1.34777 * 119.99736 * 179.97438 * 8 3 2 11 11 C 1.40159 * 119.99983 * 179.97438 * 10 8 3 12 12 C 1.40409 * 125.97033 * 0.02562 * 11 10 8 13 13 C 1.35241 * 107.86602 * 179.73843 * 12 11 10 14 14 N 1.34966 * 107.86079 * 0.39163 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.87198 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97718 * 179.97438 * 11 10 8 25 25 H 1.08997 * 109.46549 * 299.99340 * 1 2 3 26 26 H 1.08992 * 109.46954 * 59.99862 * 1 2 3 27 27 H 1.09004 * 109.46692 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46738 * 239.99960 * 2 1 3 29 29 H 1.09002 * 109.47056 * 120.00676 * 2 1 3 30 30 H 0.96695 * 117.00071 * 180.02562 * 7 5 3 31 31 H 0.97003 * 120.00166 * 0.02562 * 10 8 3 32 32 H 1.08002 * 126.06850 * 0.02562 * 12 11 10 33 33 H 1.08003 * 126.07024 * 180.26845 * 13 12 11 34 34 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 35 35 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 36 36 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6413 2.1163 -1.2876 6 8 2.4897 2.5531 -2.0288 7 8 0.3437 2.2311 -1.6112 8 6 3.5420 1.4442 0.1238 9 8 4.1451 0.3949 0.2036 10 7 4.2150 2.6117 0.1447 11 6 5.6118 2.6134 0.2604 12 6 6.4324 1.4786 0.3617 13 6 7.7144 1.9000 0.4496 14 7 7.7099 3.2493 0.4148 15 6 8.8889 4.1160 0.4861 16 6 8.9094 5.0354 -0.7078 17 1 8.1226 4.9800 -1.4456 18 6 9.9324 5.9473 -0.8582 19 7 10.8876 6.0185 0.0430 20 14 9.9575 7.0875 -2.3377 21 1 11.1494 7.9701 -2.2624 22 1 10.0166 6.2810 -3.5832 23 1 8.7263 7.9178 -2.3436 24 7 6.3814 3.6758 0.2920 25 1 -0.3632 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.1370 2.6707 -2.4473 31 1 3.7326 3.4509 0.0805 32 1 6.0992 0.4512 0.3639 33 1 8.5868 1.2691 0.5348 34 1 9.7905 3.5034 0.4883 35 1 8.8497 4.7082 1.4002 36 1 10.8746 5.4266 0.8114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609890507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:29 Heat of formation + Delta-G solvation = -51.448404 kcal Electronic energy + Delta-G solvation = -21577.774197 eV Core-core repulsion = 18063.928490 eV Total energy + Delta-G solvation = -3513.845707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31177 -40.48492 -39.18543 -36.53192 -35.17769 -34.68351 -33.66338 -31.00088 -29.42453 -28.99754 -26.23395 -23.78668 -23.37971 -22.47365 -21.02878 -20.16496 -19.59781 -18.52269 -17.56903 -17.18361 -17.04170 -16.67331 -15.93658 -15.22931 -14.88716 -14.36620 -14.27306 -13.97282 -13.77187 -13.63032 -13.23211 -12.99154 -12.45792 -12.25349 -12.13573 -12.07367 -11.82390 -11.48949 -11.23337 -11.15116 -10.82241 -10.79255 -10.46864 -10.14739 -10.12657 -9.73466 -8.99482 -8.57262 -8.21114 -7.53727 -6.57437 -4.31284 1.77045 1.92972 2.52574 2.74266 2.92957 3.39327 3.41022 3.59395 3.66461 3.67815 4.17663 4.39227 4.42827 4.60770 4.80262 5.03513 5.09038 5.16424 5.39026 5.46471 5.69088 5.70198 5.77513 6.05752 6.09402 6.15764 6.38940 6.47475 6.57414 6.74662 7.30191 7.42176 7.47564 7.69332 7.83229 8.07220 8.35664 8.53738 8.62742 9.36825 10.80256 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027080 B = 0.003690 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.736060 B = 7585.795491 C = 8411.744045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 C -0.099 4.099 4 H 0.138 0.862 5 C 0.485 3.515 6 O -0.494 6.494 7 O -0.505 6.505 8 C 0.537 3.463 9 O -0.505 6.505 10 N -0.616 5.616 11 C 0.260 3.740 12 C -0.284 4.284 13 C 0.051 3.949 14 N -0.317 5.317 15 C 0.249 3.751 16 C -0.608 4.608 17 H 0.064 0.936 18 C 0.023 3.977 19 N -0.905 5.905 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.285 1.285 24 N -0.299 5.299 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.411 0.589 31 H 0.411 0.589 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.182 -10.318 0.767 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.139 4.139 3 C -0.121 4.121 4 H 0.156 0.844 5 C 0.325 3.675 6 O -0.380 6.380 7 O -0.318 6.318 8 C 0.321 3.679 9 O -0.378 6.378 10 N -0.262 5.262 11 C 0.007 3.993 12 C -0.316 4.316 13 C -0.099 4.099 14 N -0.098 5.098 15 C 0.131 3.869 16 C -0.646 4.646 17 H 0.082 0.918 18 C -0.181 4.181 19 N -0.541 5.541 20 Si 0.904 3.096 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.211 1.211 24 N -0.130 5.130 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.271 0.729 31 H 0.246 0.754 32 H 0.179 0.821 33 H 0.186 0.814 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.401 -8.576 0.246 21.213 hybrid contribution -1.207 -1.269 0.172 1.760 sum -20.608 -9.845 0.418 22.843 Atomic orbital electron populations 1.22022 0.94099 1.02390 1.03484 1.21347 0.96530 0.90897 1.05095 1.21349 0.93819 1.01090 0.95845 0.84413 1.22851 0.80548 0.76490 0.87586 1.90891 1.51371 1.44618 1.51098 1.84563 1.27465 1.74159 1.45640 1.19633 0.87960 0.83470 0.76844 1.90671 1.68337 1.31038 1.47717 1.42297 1.03602 1.09487 1.70812 1.19060 0.83686 0.93344 1.03235 1.21510 0.90647 0.99761 1.19648 1.22562 0.99059 0.85715 1.02534 1.48803 1.04887 1.04543 1.51584 1.19767 0.78274 0.89507 0.99336 1.22119 1.12828 1.21392 1.08308 0.91806 1.25925 0.91932 0.97675 1.02613 1.70854 1.33220 1.38704 1.11283 0.83420 0.76312 0.75779 0.74128 1.20516 1.21212 1.21125 1.77364 0.88304 1.19983 1.27323 0.92353 0.90466 0.92066 0.90506 0.89064 0.72890 0.75365 0.82147 0.81420 0.93579 0.94736 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.55 37.16 0.36 -0.61 16 2 C -0.10 -0.82 4.74 -26.73 -0.13 -0.94 16 3 C -0.10 -0.91 2.66 -92.93 -0.25 -1.16 16 4 H 0.14 0.84 8.14 -51.93 -0.42 0.41 16 5 C 0.48 4.74 7.47 36.01 0.27 5.01 16 6 O -0.49 -7.03 16.15 -18.75 -0.30 -7.33 16 7 O -0.51 -3.05 10.57 -39.26 -0.41 -3.47 16 8 C 0.54 7.70 6.62 -10.99 -0.07 7.63 16 9 O -0.50 -8.52 13.05 5.55 0.07 -8.45 16 10 N -0.62 -10.08 4.84 -11.13 -0.05 -10.13 16 11 C 0.26 5.43 8.11 -154.39 -1.25 4.18 16 12 C -0.28 -5.76 9.61 -39.83 -0.38 -6.15 16 13 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 14 N -0.32 -7.57 3.67 -62.56 -0.23 -7.80 16 15 C 0.25 6.41 5.57 -5.19 -0.03 6.39 16 16 C -0.61 -17.46 9.24 -34.44 -0.32 -17.78 16 17 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 18 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 19 N -0.91 -26.63 13.65 55.43 0.76 -25.87 16 20 Si 1.08 25.37 29.90 -169.99 -5.08 20.29 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 N -0.30 -7.16 12.42 31.44 0.39 -6.77 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.47 5.46 -51.93 -0.28 0.18 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.75 7.96 -51.93 -0.41 0.33 16 30 H 0.41 1.02 9.10 45.56 0.41 1.43 16 31 H 0.41 5.85 8.51 -40.82 -0.35 5.50 16 32 H 0.16 3.09 5.92 -52.49 -0.31 2.78 16 33 H 0.17 2.78 8.06 -52.48 -0.42 2.35 16 34 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 35 H 0.03 0.92 8.00 -51.93 -0.42 0.50 16 36 H 0.27 7.66 7.22 -40.82 -0.29 7.37 16 LS Contribution 314.58 15.07 4.74 4.74 Total: -1.00 -36.35 314.58 -5.60 -41.95 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -3.38 Total: 4.89 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.10 Total: -2.04 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.86 Total: -50.58 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.65 Total: -19.25 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.29 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.35 -5.60 -41.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609890507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.499 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds