Wall clock time and date at job start Tue Mar 31 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47358 * 240.00071 * 2 1 3 5 5 O 1.45198 * 109.47444 * 119.99881 * 2 1 3 6 6 C 1.34778 * 116.99640 * 60.00134 * 5 2 1 7 7 O 1.21547 * 120.00044 * 0.02562 * 6 5 2 8 8 C 1.47081 * 119.99757 * 180.02562 * 6 5 2 9 9 C 1.38130 * 126.45596 * 359.97426 * 8 6 5 10 10 N 1.34231 * 107.56623 * 180.30281 * 9 8 6 11 11 H 0.97000 * 125.66104 * 179.73836 * 10 9 8 12 12 N 1.39915 * 108.68300 * 359.58002 * 10 9 8 13 13 C 1.31114 * 108.85084 * 0.42738 * 12 10 9 14 14 N 1.39271 * 126.09761 * 179.71185 * 13 12 10 15 15 C 1.34775 * 119.99701 * 0.04118 * 14 13 12 16 16 O 1.21753 * 120.00225 * 0.02562 * 15 14 13 17 17 C 1.41842 * 119.99588 * 180.02562 * 15 14 13 18 18 H 1.07999 * 120.00236 * 0.02562 * 17 15 14 19 19 C 1.40138 * 119.99618 * 180.02562 * 17 15 14 20 20 N 1.30625 * 120.00253 * 359.97438 * 19 17 15 21 21 Si 1.86807 * 119.99801 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47087 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46974 * 119.99507 * 21 19 17 24 24 H 1.48496 * 109.46819 * 239.99473 * 21 19 17 25 25 H 1.09002 * 109.47811 * 299.99826 * 1 2 3 26 26 H 1.08999 * 109.47520 * 60.00135 * 1 2 3 27 27 H 1.09003 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46980 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46897 * 299.99691 * 3 2 1 30 30 H 1.08998 * 109.46736 * 60.00261 * 3 2 1 31 31 H 1.08993 * 109.46825 * 300.00048 * 4 2 1 32 32 H 1.09001 * 109.46715 * 59.99927 * 4 2 1 33 33 H 1.08998 * 109.47171 * 179.97438 * 4 2 1 34 34 H 1.08002 * 126.21331 * 0.03242 * 9 8 6 35 35 H 0.97001 * 120.00312 * 180.02562 * 14 13 12 36 36 H 0.97000 * 120.00219 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6519 -1.9736 1.3384 7 8 0.9510 -2.5112 0.5034 8 6 2.1048 -2.7300 2.5157 9 6 2.9001 -2.2550 3.5403 10 7 3.0845 -3.2609 4.4097 11 1 3.6068 -3.2145 5.2258 12 7 2.3953 -4.3866 3.9455 13 6 1.8075 -4.0860 2.8126 14 7 1.0308 -4.9443 2.0382 15 6 0.8273 -6.2149 2.4388 16 8 1.3220 -6.6123 3.4779 17 6 0.0367 -7.0892 1.6498 18 1 -0.4018 -6.7368 0.7279 19 6 -0.1754 -8.4102 2.0667 20 7 0.3553 -8.8366 3.1815 21 14 -1.2172 -9.5615 1.0279 22 1 -1.6999 -8.8406 -0.1772 23 1 -0.3997 -10.7294 0.6123 24 1 -2.3806 -10.0294 1.8234 25 1 -0.3635 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2492 32 1 1.6766 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 3.3041 -1.2569 3.6242 35 1 0.6362 -4.6276 1.2106 36 1 0.2088 -9.7511 3.4698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643699894.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:36 Heat of formation + Delta-G solvation = -48.977702 kcal Electronic energy + Delta-G solvation = -22120.313418 eV Core-core repulsion = 18606.574849 eV Total energy + Delta-G solvation = -3513.738569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.97754 -40.01219 -37.41880 -36.56585 -33.95842 -33.50442 -32.30573 -30.05339 -29.79752 -27.46293 -27.37999 -26.57241 -23.75799 -22.26088 -20.86599 -19.33544 -18.94875 -17.97542 -16.99980 -16.54827 -15.97972 -15.74109 -15.44758 -14.98680 -14.53365 -14.11162 -13.99934 -13.90444 -13.64192 -12.70414 -12.56701 -12.56113 -12.43827 -12.20810 -11.90430 -11.87797 -11.40648 -11.25230 -11.17950 -11.11535 -10.55469 -10.27470 -10.22898 -10.13352 -9.99212 -9.63344 -8.86939 -8.50043 -7.62683 -7.38477 -6.28215 -4.79600 1.69082 2.82077 2.82468 3.11790 3.18884 3.23419 3.28004 3.66587 4.06118 4.52082 4.57543 4.70121 4.73827 4.88372 4.92995 5.23504 5.39713 5.45243 5.48520 5.63125 5.69582 5.76416 5.83799 5.86823 5.89684 6.00982 6.28560 6.33067 6.46944 6.78596 7.33978 7.47940 7.73145 8.08829 8.16465 8.25223 8.40523 8.90196 9.43152 10.49100 10.70227 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.004686 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.974102 B = 5973.789278 C = 7110.700472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.119 3.881 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.354 6.354 6 C 0.550 3.450 7 O -0.517 6.517 8 C -0.322 4.322 9 C 0.134 3.866 10 N -0.462 5.462 11 H 0.441 0.559 12 N -0.287 5.287 13 C 0.382 3.618 14 N -0.651 5.651 15 C 0.535 3.465 16 O -0.537 6.537 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.088 3.912 20 N -0.749 5.749 21 Si 0.913 3.087 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.275 1.275 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.185 0.815 35 H 0.411 0.589 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.887 18.654 -4.443 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.083 3.917 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.272 6.272 6 C 0.397 3.603 7 O -0.407 6.407 8 C -0.339 4.339 9 C -0.024 4.024 10 N -0.164 5.164 11 H 0.284 0.716 12 N -0.121 5.121 13 C 0.122 3.878 14 N -0.304 5.304 15 C 0.342 3.658 16 O -0.415 6.415 17 C -0.571 4.571 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.377 5.377 21 Si 0.738 3.262 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.202 0.798 35 H 0.248 0.752 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.171 17.033 -3.043 17.798 hybrid contribution -0.582 0.441 -1.203 1.407 sum 3.590 17.474 -4.245 18.337 Atomic orbital electron populations 1.22496 0.94173 1.05153 1.02232 1.22064 0.94354 0.91898 0.83385 1.21832 1.02021 0.92983 1.02758 1.22497 1.01502 1.03619 0.96433 1.86567 1.70426 1.25372 1.44861 1.19863 0.76669 0.79395 0.84339 1.90691 1.36813 1.69904 1.43252 1.19138 1.18807 0.94976 1.00942 1.23034 0.95274 0.94616 0.89469 1.46384 1.40382 1.08756 1.20854 0.71563 1.78476 1.17783 1.02288 1.13515 1.19569 0.90904 0.87258 0.90085 1.44235 1.49727 1.11800 1.24604 1.17298 0.82758 0.78721 0.87032 1.90734 1.52365 1.73252 1.25184 1.20048 1.32425 0.95897 1.08718 0.90951 1.25750 0.94698 0.98412 0.94615 1.70031 1.33206 1.16208 1.18290 0.86216 0.79691 0.79871 0.80471 1.18470 1.19984 1.19989 0.92213 0.91454 0.89332 0.91651 0.90643 0.91646 0.89325 0.91461 0.92212 0.79817 0.75186 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 8.37 37.15 0.31 -1.81 16 2 C 0.12 1.37 1.13 -90.62 -0.10 1.27 16 3 C -0.14 -1.15 8.85 37.16 0.33 -0.82 16 4 C -0.18 -2.12 8.37 37.16 0.31 -1.81 16 5 O -0.35 -4.89 9.71 -40.70 -0.40 -5.29 16 6 C 0.55 9.31 7.25 34.32 0.25 9.56 16 7 O -0.52 -9.62 10.74 -19.30 -0.21 -9.83 16 8 C -0.32 -5.83 6.14 -104.93 -0.64 -6.47 16 9 C 0.13 1.83 11.85 -16.54 -0.20 1.63 16 10 N -0.46 -7.13 7.27 30.86 0.22 -6.91 16 11 H 0.44 4.83 8.96 -182.74 -1.64 3.19 16 12 N -0.29 -6.64 10.85 31.57 0.34 -6.30 16 13 C 0.38 8.82 7.78 -154.75 -1.20 7.61 16 14 N -0.65 -16.52 5.39 -13.52 -0.07 -16.59 16 15 C 0.53 15.95 7.54 -14.88 -0.11 15.84 16 16 O -0.54 -17.83 13.59 5.14 0.07 -17.76 16 17 C -0.54 -15.42 9.31 -37.49 -0.35 -15.77 16 18 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 19 C 0.09 2.45 5.50 -17.35 -0.10 2.35 16 20 N -0.75 -22.41 11.73 55.55 0.65 -21.76 16 21 Si 0.91 20.13 29.56 -169.99 -5.02 15.10 16 22 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.18 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.41 9.63 6.90 -40.82 -0.28 9.34 16 36 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -37.38 311.08 -6.69 -44.06 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.46 Total: 8.98 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -1.50 Total: 11.60 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 1.15 Total: -51.56 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.53 Total: -32.87 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -37.38 -6.69 -44.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643699894.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.916 kcal (2) G-P(sol) polarization free energy of solvation -37.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds