Wall clock time and date at job start Tue Mar 31 2020 05:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46491 * 120.00147 * 2 1 4 4 C 1.50707 * 109.46890 * 270.00025 * 3 2 1 5 5 H 1.07990 * 120.00243 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99813 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99636 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00005 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47281 * 90.00056 * 8 6 4 10 10 H 1.48499 * 109.47131 * 209.99773 * 8 6 4 11 11 H 1.48501 * 109.47099 * 329.99679 * 8 6 4 12 12 C 1.34777 * 120.00026 * 179.97438 * 2 1 3 13 13 O 1.21284 * 120.00043 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00111 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.47443 * 179.97438 * 14 12 2 16 16 O 1.42893 * 109.47267 * 180.02562 * 15 14 12 17 17 C 1.35956 * 117.00026 * 179.97438 * 16 15 14 18 18 C 1.38657 * 120.06128 * 359.97438 * 17 16 15 19 19 C 1.38184 * 119.96964 * 180.02562 * 18 17 16 20 20 C 1.38265 * 120.09281 * 359.97438 * 19 18 17 21 21 C 1.38248 * 120.12705 * 0.02562 * 20 19 18 22 22 C 1.38332 * 120.03366 * 359.97438 * 21 20 19 23 23 F 1.35103 * 120.05240 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47081 * 270.00039 * 1 2 3 25 25 H 1.08998 * 109.47092 * 30.00545 * 1 2 3 26 26 H 1.09003 * 109.46928 * 150.00086 * 1 2 3 27 27 H 1.09005 * 109.47481 * 29.99504 * 3 2 1 28 28 H 1.08994 * 109.47479 * 149.99902 * 3 2 1 29 29 H 0.97007 * 119.99511 * 179.97438 * 7 6 4 30 30 H 1.09007 * 109.47324 * 59.99956 * 14 12 2 31 31 H 1.09001 * 109.47308 * 299.99976 * 14 12 2 32 32 H 1.08994 * 109.46599 * 59.99619 * 15 14 12 33 33 H 1.09001 * 109.46881 * 300.00277 * 15 14 12 34 34 H 1.08004 * 120.01774 * 0.03769 * 18 17 16 35 35 H 1.08000 * 119.95526 * 180.27319 * 19 18 17 36 36 H 1.08001 * 119.93128 * 179.97438 * 20 19 18 37 37 H 1.07998 * 119.98480 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7036 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6729 7 7 3.3456 3.2572 -2.9128 8 14 3.7330 3.9291 -0.2531 9 1 5.1066 3.5081 0.1228 10 1 3.7479 5.3559 -0.6646 11 1 2.8271 3.7592 0.9113 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6353 0.0005 16 8 1.6652 -4.8728 -0.0001 17 6 2.4056 -6.0130 -0.0007 18 6 3.7904 -5.9420 -0.0013 19 6 4.5411 -7.1021 -0.0024 20 6 3.9134 -8.3340 -0.0025 21 6 2.5330 -8.4095 -0.0019 22 6 1.7763 -7.2514 -0.0008 23 9 0.4273 -7.3247 0.0003 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5138 29 1 3.8219 4.0835 -3.0901 30 1 0.7591 -2.5303 -0.8897 31 1 0.7584 -2.5299 0.8903 32 1 3.0063 -3.5775 0.8904 33 1 3.0063 -3.5775 -0.8895 34 1 4.2820 -4.9803 -0.0006 35 1 5.6197 -7.0465 0.0016 36 1 4.5027 -9.2391 -0.0038 37 1 2.0451 -9.3729 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034651961.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:12 Heat of formation + Delta-G solvation = -89.968207 kcal Electronic energy + Delta-G solvation = -21098.116165 eV Core-core repulsion = 17562.680152 eV Total energy + Delta-G solvation = -3535.436012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.89843 -40.22096 -39.16175 -37.58984 -35.05719 -32.73419 -31.99299 -30.90840 -29.77476 -28.43050 -26.09812 -24.81759 -22.84710 -22.55557 -21.51316 -18.91047 -18.23911 -17.33027 -17.03790 -16.75020 -16.52119 -16.16022 -15.56837 -15.41635 -15.05196 -14.70658 -14.55707 -14.11498 -13.89342 -13.12380 -13.02669 -12.86929 -12.41881 -12.39707 -12.19441 -12.06381 -11.89371 -11.73457 -11.48716 -11.13710 -10.98191 -10.80581 -10.55970 -10.18993 -9.59785 -9.18698 -9.17929 -8.62964 -8.39043 -7.80217 -6.12639 -4.12022 0.89255 1.04028 2.78208 3.20015 3.26365 3.32413 3.33937 3.35847 3.85660 4.07179 4.35923 4.49429 4.59864 4.83928 4.95336 4.97089 4.97973 5.05789 5.21185 5.27990 5.41108 5.57427 5.70824 5.75019 5.80305 5.82322 5.84406 5.96100 6.13220 6.15786 6.44570 6.62714 6.87347 7.14523 7.23348 7.55742 8.12358 8.41515 8.80727 8.91076 9.47053 11.00683 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030651 B = 0.003191 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.285697 B = 8773.488316 C = 9278.481337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.594 5.594 3 C 0.215 3.785 4 C -0.531 4.531 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.512 3.488 13 O -0.544 6.544 14 C -0.138 4.138 15 C 0.074 3.926 16 O -0.311 6.311 17 C 0.106 3.894 18 C -0.181 4.181 19 C -0.088 4.088 20 C -0.135 4.135 21 C -0.119 4.119 22 C 0.063 3.937 23 F -0.134 7.134 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.032 0.968 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 -20.405 7.887 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.326 5.326 3 C 0.095 3.905 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.299 3.701 13 O -0.422 6.422 14 C -0.178 4.178 15 C -0.001 4.001 16 O -0.224 6.224 17 C 0.059 3.941 18 C -0.200 4.200 19 C -0.106 4.106 20 C -0.153 4.153 21 C -0.138 4.138 22 C 0.043 3.957 23 F -0.113 7.113 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.826 -20.176 7.777 21.806 hybrid contribution 0.196 0.799 0.488 0.957 sum -2.629 -19.377 8.264 21.229 Atomic orbital electron populations 1.21724 0.80626 1.03294 1.00702 1.47806 1.06496 1.06987 1.71292 1.19699 0.92487 0.79879 0.98480 1.21320 1.37187 1.07259 0.91206 0.90746 1.24868 0.95197 0.97341 0.95627 1.69900 1.41362 1.23547 1.18677 0.86832 0.80115 0.79773 0.82859 1.19879 1.21018 1.19054 1.19954 0.87862 0.84820 0.77487 1.90683 1.13790 1.87300 1.50418 1.21513 0.99234 0.91614 1.05465 1.22576 0.94365 0.79817 1.03311 1.86041 1.35571 1.12603 1.88197 1.19024 0.90712 0.85872 0.98486 1.21369 0.91746 1.00903 1.06001 1.21070 1.00399 0.91604 0.97568 1.20922 0.93442 0.98237 1.02700 1.20997 0.94436 0.96799 1.01544 1.17019 0.77391 0.91672 1.09599 1.91498 1.28454 1.96986 1.94318 0.93398 0.90370 0.91879 0.95058 0.94459 0.92500 0.87998 0.88300 0.90815 0.90568 0.83883 0.84967 0.84953 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.24 59.85 0.61 1.80 16 2 N -0.59 -11.93 2.86 -182.96 -0.52 -12.45 16 3 C 0.21 5.18 4.23 -5.20 -0.02 5.16 16 4 C -0.53 -15.14 9.94 -34.43 -0.34 -15.48 16 5 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 8 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 12 C 0.51 9.99 7.67 -10.99 -0.08 9.91 16 13 O -0.54 -12.71 15.56 5.55 0.09 -12.63 16 14 C -0.14 -1.96 4.62 -27.88 -0.13 -2.09 16 15 C 0.07 1.04 4.03 37.16 0.15 1.19 16 16 O -0.31 -4.37 10.00 -19.60 -0.20 -4.57 16 17 C 0.11 1.37 6.69 -39.18 -0.26 1.11 16 18 C -0.18 -2.03 9.04 -39.45 -0.36 -2.39 16 19 C -0.09 -0.79 10.04 -39.59 -0.40 -1.19 16 20 C -0.13 -1.09 10.04 -39.57 -0.40 -1.49 16 21 C -0.12 -1.10 10.02 -39.54 -0.40 -1.50 16 22 C 0.06 0.77 7.31 -39.30 -0.29 0.48 16 23 F -0.13 -1.79 17.11 2.25 0.04 -1.75 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 26 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 27 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 28 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.10 1.33 7.40 -51.93 -0.38 0.95 16 31 H 0.10 1.18 8.11 -51.93 -0.42 0.76 16 32 H 0.07 1.00 7.62 -51.93 -0.40 0.61 16 33 H 0.08 1.11 7.62 -51.93 -0.40 0.71 16 34 H 0.14 1.56 6.30 -52.48 -0.33 1.23 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 321.28 15.07 4.84 4.84 Total: -1.00 -34.11 321.28 -6.34 -40.46 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -4.69 Total: -1.35 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.01 Total: -2.50 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.25 Total: -39.17 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.11 Total: -17.19 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.11 -6.34 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651961.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.513 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds