Wall clock time and date at job start Tue Mar 31 2020 05:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99916 * 2 1 4 4 C 1.50696 * 109.47067 * 270.00296 * 3 2 1 5 5 H 1.07995 * 119.99988 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99958 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99874 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 119.99892 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47427 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47049 * 120.00069 * 8 6 4 11 11 H 1.48505 * 109.47177 * 239.99651 * 8 6 4 12 12 C 1.34773 * 120.00178 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99826 * 180.02562 * 12 2 1 14 14 C 1.50697 * 119.99927 * 0.02562 * 12 2 1 15 15 C 1.53008 * 109.47139 * 179.97438 * 14 12 2 16 16 O 1.42895 * 109.47006 * 179.97438 * 15 14 12 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47081 * 269.99728 * 1 2 3 25 25 H 1.08997 * 109.47221 * 29.99899 * 1 2 3 26 26 H 1.08996 * 109.46724 * 150.00205 * 1 2 3 27 27 H 1.09005 * 109.47266 * 30.00014 * 3 2 1 28 28 H 1.09002 * 109.47324 * 149.99398 * 3 2 1 29 29 H 0.96998 * 119.99807 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47470 * 60.00043 * 14 12 2 31 31 H 1.09003 * 109.47335 * 299.99268 * 14 12 2 32 32 H 1.09005 * 109.46539 * 60.00110 * 15 14 12 33 33 H 1.08995 * 109.46786 * 300.00247 * 15 14 12 34 34 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 35 35 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 36 36 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2416 6 6 3.1259 2.8781 -1.6727 7 7 3.5524 3.6187 -0.6731 8 14 3.4378 3.4170 -3.4338 9 1 2.8618 2.4159 -4.3672 10 1 2.7996 4.7373 -3.6678 11 1 4.9004 3.5260 -3.6665 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4722 0.0005 15 6 2.3798 -3.6352 0.0005 16 8 1.6653 -4.8727 0.0011 17 6 2.4058 -6.0129 0.0007 18 6 3.7910 -5.9410 0.0057 19 6 4.5422 -7.1003 0.0000 20 6 3.9130 -8.3336 0.0005 21 9 4.6489 -9.4667 0.0010 22 6 2.5305 -8.4069 0.0008 23 6 1.7767 -7.2491 0.0012 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3632 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1385 0.5139 29 1 4.0292 4.4446 -0.8504 30 1 0.7592 -2.5302 -0.8896 31 1 0.7585 -2.5299 0.8904 32 1 3.0064 -3.5774 0.8906 33 1 3.0064 -3.5774 -0.8894 34 1 4.2820 -4.9791 0.0104 35 1 5.6208 -7.0447 -0.0002 36 1 2.0409 -9.3696 0.0008 37 1 0.6982 -7.3065 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034653003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:14 Heat of formation + Delta-G solvation = -96.342660 kcal Electronic energy + Delta-G solvation = -20822.808728 eV Core-core repulsion = 17287.096299 eV Total energy + Delta-G solvation = -3535.712429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.99847 -40.30241 -39.07322 -37.37173 -34.94255 -32.78668 -31.97123 -31.33934 -29.33090 -27.84375 -25.99023 -24.75087 -23.22423 -22.51142 -21.65408 -18.82475 -18.20034 -17.56540 -16.79752 -16.67132 -16.29630 -16.05373 -15.68779 -15.34370 -14.83280 -14.68250 -14.41138 -14.13766 -13.83335 -13.25461 -13.21575 -12.78213 -12.61416 -12.35768 -12.23455 -11.94688 -11.70930 -11.67762 -11.23944 -10.95069 -10.90924 -10.70378 -10.62572 -10.21089 -9.66993 -9.43183 -9.08010 -8.48713 -8.29064 -7.74357 -6.09431 -4.14461 0.91947 1.00189 2.87533 3.26500 3.27331 3.34743 3.35146 3.39046 3.99839 4.10345 4.40953 4.45643 4.55328 4.82916 4.89695 4.98780 5.07143 5.11874 5.25571 5.32702 5.44743 5.60233 5.66079 5.76160 5.79563 5.88689 5.90077 5.92575 6.04485 6.16557 6.48663 6.96576 7.19176 7.36764 7.44877 7.86534 8.17139 8.29849 8.81824 8.97185 9.50870 10.98778 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027759 B = 0.002932 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.423713 B = 9546.148816 C =10085.570009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.599 5.599 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.509 3.491 13 O -0.545 6.545 14 C -0.139 4.139 15 C 0.074 3.926 16 O -0.315 6.315 17 C 0.130 3.870 18 C -0.180 4.180 19 C -0.110 4.110 20 C 0.052 3.948 21 F -0.144 7.144 22 C -0.115 4.115 23 C -0.128 4.128 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.263 0.737 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 -19.943 2.579 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.331 5.331 3 C 0.125 3.875 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.295 3.705 13 O -0.423 6.423 14 C -0.179 4.179 15 C -0.002 4.002 16 O -0.228 6.228 17 C 0.083 3.917 18 C -0.198 4.198 19 C -0.129 4.129 20 C 0.032 3.968 21 F -0.123 7.123 22 C -0.134 4.134 23 C -0.146 4.146 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.158 0.842 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.287 -19.733 2.625 20.597 hybrid contribution 0.449 0.367 -0.987 1.145 sum -4.837 -19.366 1.639 20.028 Atomic orbital electron populations 1.21690 0.81179 1.02818 1.00628 1.48139 1.06370 1.07717 1.70848 1.19336 0.92603 0.77928 0.97649 1.21457 1.36618 1.06311 0.92239 0.92383 1.24947 0.95314 0.96364 0.97523 1.69939 1.38348 1.14326 1.30715 0.86429 0.78119 0.78338 0.84459 1.19787 1.20918 1.20834 1.19944 0.87905 0.84843 0.77830 1.90685 1.13792 1.87294 1.50542 1.21535 0.99224 0.91914 1.05220 1.22567 0.94391 0.79939 1.03253 1.86001 1.35898 1.12796 1.88130 1.19032 0.89950 0.86834 0.95841 1.21313 0.92836 0.99797 1.05878 1.20978 1.01037 0.90551 1.00366 1.17582 0.89381 0.82160 1.07636 1.91481 1.77149 1.49230 1.94431 1.20921 0.91786 0.99354 1.01324 1.20281 1.00803 0.88750 1.04803 0.93524 0.90604 0.92237 0.94830 0.93740 0.92705 0.88258 0.88419 0.90858 0.90734 0.83841 0.84432 0.84209 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.24 59.85 0.61 1.82 16 2 N -0.60 -12.21 2.86 -182.95 -0.52 -12.73 16 3 C 0.24 6.24 5.16 -5.20 -0.03 6.22 16 4 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.51 9.96 7.67 -10.99 -0.08 9.88 16 13 O -0.54 -12.94 15.56 5.56 0.09 -12.85 16 14 C -0.14 -1.90 4.62 -27.88 -0.13 -2.03 16 15 C 0.07 0.98 4.03 37.16 0.15 1.13 16 16 O -0.31 -3.92 10.14 -19.58 -0.20 -4.12 16 17 C 0.13 1.50 6.69 -39.23 -0.26 1.24 16 18 C -0.18 -2.02 9.04 -39.44 -0.36 -2.37 16 19 C -0.11 -1.15 10.02 -39.53 -0.40 -1.55 16 20 C 0.05 0.55 7.30 -39.42 -0.29 0.26 16 21 F -0.14 -1.60 17.27 2.25 0.04 -1.57 16 22 C -0.12 -1.06 10.02 -39.53 -0.40 -1.46 16 23 C -0.13 -1.25 9.99 -39.44 -0.39 -1.64 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.17 8.07 -51.93 -0.42 0.76 16 26 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 27 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.10 1.22 7.40 -51.93 -0.38 0.83 16 31 H 0.10 1.13 8.11 -51.93 -0.42 0.71 16 32 H 0.07 0.98 7.61 -51.93 -0.40 0.59 16 33 H 0.07 1.04 7.63 -51.93 -0.40 0.65 16 34 H 0.14 1.58 6.30 -52.49 -0.33 1.25 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -32.48 325.07 -6.69 -39.17 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.72 Total: -1.87 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.99 Total: -1.94 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.21 Total: -38.29 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.11 Total: -16.97 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.48 -6.69 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034653003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.172 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds