Wall clock time and date at job start Tue Mar 31 2020 05:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99916 * 2 1 4 4 C 1.50696 * 109.47067 * 270.00296 * 3 2 1 5 5 H 1.07995 * 119.99988 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99958 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99874 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 119.99892 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47427 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47049 * 120.00069 * 8 6 4 11 11 H 1.48505 * 109.47177 * 239.99651 * 8 6 4 12 12 C 1.34773 * 120.00178 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99826 * 180.02562 * 12 2 1 14 14 C 1.50697 * 119.99927 * 0.02562 * 12 2 1 15 15 C 1.53008 * 109.47139 * 179.97438 * 14 12 2 16 16 O 1.42895 * 109.47006 * 179.97438 * 15 14 12 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47081 * 269.99728 * 1 2 3 25 25 H 1.08997 * 109.47221 * 29.99899 * 1 2 3 26 26 H 1.08996 * 109.46724 * 150.00205 * 1 2 3 27 27 H 1.09005 * 109.47266 * 30.00014 * 3 2 1 28 28 H 1.09002 * 109.47324 * 149.99398 * 3 2 1 29 29 H 0.96998 * 119.99807 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47470 * 60.00043 * 14 12 2 31 31 H 1.09003 * 109.47335 * 299.99268 * 14 12 2 32 32 H 1.09005 * 109.46539 * 60.00110 * 15 14 12 33 33 H 1.08995 * 109.46786 * 300.00247 * 15 14 12 34 34 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 35 35 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 36 36 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2416 6 6 3.1259 2.8781 -1.6727 7 7 3.5524 3.6187 -0.6731 8 14 3.4378 3.4170 -3.4338 9 1 2.8618 2.4159 -4.3672 10 1 2.7996 4.7373 -3.6678 11 1 4.9004 3.5260 -3.6665 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4722 0.0005 15 6 2.3798 -3.6352 0.0005 16 8 1.6653 -4.8727 0.0011 17 6 2.4058 -6.0129 0.0007 18 6 3.7910 -5.9410 0.0057 19 6 4.5422 -7.1003 0.0000 20 6 3.9130 -8.3336 0.0005 21 9 4.6489 -9.4667 0.0010 22 6 2.5305 -8.4069 0.0008 23 6 1.7767 -7.2491 0.0012 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3632 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1385 0.5139 29 1 4.0292 4.4446 -0.8504 30 1 0.7592 -2.5302 -0.8896 31 1 0.7585 -2.5299 0.8904 32 1 3.0064 -3.5774 0.8906 33 1 3.0064 -3.5774 -0.8894 34 1 4.2820 -4.9791 0.0104 35 1 5.6208 -7.0447 -0.0002 36 1 2.0409 -9.3696 0.0008 37 1 0.6982 -7.3065 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034653003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:14 Heat of formation + Delta-G solvation = -116.221272 kcal Electronic energy + Delta-G solvation = -20823.670730 eV Core-core repulsion = 17287.096299 eV Total energy + Delta-G solvation = -3536.574431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.83493 -41.25908 -40.54107 -38.27238 -36.64010 -34.77783 -33.18249 -32.17877 -30.33389 -29.57237 -27.37274 -26.15853 -24.50960 -23.62957 -22.73322 -20.09310 -19.34453 -18.71792 -18.45403 -17.76424 -17.44466 -17.36888 -17.02668 -16.56615 -16.21159 -15.97664 -15.65342 -15.21069 -14.58936 -14.58096 -14.35921 -13.99559 -13.85169 -13.69141 -13.60327 -13.44939 -13.16215 -12.86610 -12.71020 -12.68585 -12.44159 -12.21925 -11.79247 -11.71826 -11.66482 -10.70980 -10.65930 -10.20323 -9.44672 -9.14631 -8.23756 -6.38498 0.14382 0.17464 1.36485 1.38711 1.50354 1.75701 1.82221 2.36101 2.54795 2.63116 3.06270 3.30534 3.59257 3.73781 3.78997 3.92904 3.96634 4.10424 4.29097 4.35096 4.46673 4.59880 4.69232 4.77735 4.79044 4.90744 4.98465 5.03217 5.11644 5.12710 5.22008 5.23669 5.54681 5.68245 5.81436 6.04497 6.27341 6.67467 6.75576 7.26002 7.42340 8.83597 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027759 B = 0.002932 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.423713 B = 9546.148816 C =10085.570009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.608 5.608 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.499 3.501 13 O -0.598 6.598 14 C -0.121 4.121 15 C 0.080 3.920 16 O -0.312 6.312 17 C 0.110 3.890 18 C -0.191 4.191 19 C -0.117 4.117 20 C 0.040 3.960 21 F -0.149 7.149 22 C -0.108 4.108 23 C -0.122 4.122 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.025 0.975 28 H -0.001 1.001 29 H 0.267 0.733 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 -21.583 1.698 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.339 5.339 3 C 0.135 3.865 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.195 1.195 11 H -0.208 1.208 12 C 0.288 3.712 13 O -0.480 6.480 14 C -0.160 4.160 15 C 0.004 3.996 16 O -0.226 6.226 17 C 0.064 3.936 18 C -0.210 4.210 19 C -0.136 4.136 20 C 0.021 3.979 21 F -0.127 7.127 22 C -0.126 4.126 23 C -0.141 4.141 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.043 0.957 28 H 0.017 0.983 29 H 0.076 0.924 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.155 0.845 35 H 0.166 0.834 36 H 0.186 0.814 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.369 -21.398 1.750 22.699 hybrid contribution 1.084 0.806 -0.659 1.503 sum -6.285 -20.592 1.091 21.557 Atomic orbital electron populations 1.22003 0.77541 1.04281 1.02870 1.48158 1.08632 1.06259 1.70839 1.18794 0.91217 0.80370 0.96085 1.21739 1.36767 1.06506 0.93067 0.92726 1.25869 0.94945 0.96466 1.01965 1.70054 1.38991 1.14834 1.33004 0.85359 0.77847 0.78424 0.79126 1.19022 1.19456 1.20830 1.20958 0.87630 0.86392 0.76200 1.90656 1.16475 1.88210 1.52705 1.21408 0.98720 0.88036 1.07844 1.22353 0.94183 0.80635 1.02382 1.85960 1.35584 1.12541 1.88516 1.19312 0.90133 0.87171 0.96983 1.21333 0.93170 0.99843 1.06675 1.21120 1.01726 0.90492 1.00277 1.17802 0.90148 0.81935 1.08006 1.91470 1.77394 1.49372 1.94510 1.21234 0.91150 1.00488 0.99727 1.20563 1.02026 0.87891 1.03603 0.90841 0.91557 0.88383 0.95675 0.98251 0.92387 0.85759 0.85221 0.91637 0.92089 0.84527 0.83445 0.81412 0.81822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.05 10.24 127.77 1.31 3.36 16 2 N -0.61 -24.66 2.86 -851.14 -2.43 -27.09 16 3 C 0.26 13.62 5.16 85.63 0.44 14.06 16 4 C -0.54 -30.85 9.39 25.60 0.24 -30.60 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.37 5.46 84.66 0.46 0.83 16 7 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 8 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 C 0.50 19.48 7.67 87.66 0.67 20.15 16 13 O -0.60 -29.52 15.56 -3.03 -0.05 -29.57 16 14 C -0.12 -3.02 4.62 29.85 0.14 -2.88 16 15 C 0.08 2.06 4.03 71.98 0.29 2.35 16 16 O -0.31 -7.18 10.14 -92.99 -0.94 -8.12 16 17 C 0.11 2.39 6.69 22.50 0.15 2.54 16 18 C -0.19 -4.27 9.04 22.36 0.20 -4.07 16 19 C -0.12 -2.40 10.02 22.30 0.22 -2.17 16 20 C 0.04 0.80 7.30 22.37 0.16 0.96 16 21 F -0.15 -3.12 17.27 44.97 0.78 -2.34 16 22 C -0.11 -1.70 10.02 22.30 0.22 -1.48 16 23 C -0.12 -2.07 9.99 22.36 0.22 -1.84 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 26 H 0.10 1.93 6.44 -2.39 -0.02 1.92 16 27 H 0.03 1.35 8.07 -2.38 -0.02 1.33 16 28 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 29 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.12 2.56 7.40 -2.39 -0.02 2.54 16 31 H 0.13 2.48 8.11 -2.39 -0.02 2.47 16 32 H 0.07 1.78 7.61 -2.38 -0.02 1.76 16 33 H 0.06 1.73 7.63 -2.39 -0.02 1.71 16 34 H 0.14 3.15 6.30 -2.91 -0.02 3.13 16 35 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -73.00 325.07 5.48 -67.52 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 1.07 Total: 7.46 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 4.74 Total: 1.20 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -2.15 Total: -82.65 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.99 Total: -37.69 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -73.00 5.48 -67.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034653003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.698 kcal (2) G-P(sol) polarization free energy of solvation -73.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds