Wall clock time and date at job start Tue Mar 31 2020 05:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 119.99985 * 2 1 4 4 O 1.21559 * 120.00070 * 186.14290 * 3 2 1 5 5 C 1.47849 * 119.99928 * 6.14646 * 3 2 1 6 6 C 1.39938 * 120.02468 * 329.32213 * 5 3 2 7 7 C 1.38331 * 120.35403 * 180.02562 * 6 5 3 8 8 C 1.37752 * 120.41503 * 359.97373 * 7 6 5 9 9 C 1.40755 * 120.04332 * 0.04703 * 8 7 6 10 10 C 1.41428 * 120.17796 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00169 * 331.40510 * 10 9 8 12 12 C 1.39943 * 120.00349 * 151.39895 * 10 9 8 13 13 N 1.30827 * 119.99467 * 2.83175 * 12 10 9 14 14 Si 1.86797 * 120.00237 * 182.82588 * 12 10 9 15 15 H 1.48500 * 109.46591 * 85.00802 * 14 12 10 16 16 H 1.48503 * 109.47002 * 205.00089 * 14 12 10 17 17 H 1.48497 * 109.47242 * 325.00208 * 14 12 10 18 18 C 1.39008 * 120.02885 * 149.33785 * 5 3 2 19 19 C 1.39846 * 120.00209 * 180.02562 * 2 1 3 20 20 C 1.38890 * 120.07505 * 188.30540 * 19 2 1 21 21 C 1.38110 * 119.92914 * 179.79148 * 20 19 2 22 22 C 1.38285 * 120.07208 * 0.48805 * 21 20 19 23 23 C 1.38291 * 120.14435 * 359.74291 * 22 21 20 24 24 C 1.38105 * 120.07001 * 0.02562 * 23 22 21 25 25 H 1.09004 * 109.46888 * 89.21402 * 1 2 3 26 26 H 1.08996 * 109.46958 * 209.20900 * 1 2 3 27 27 H 1.09004 * 109.47145 * 329.20710 * 1 2 3 28 28 H 1.07994 * 119.82208 * 0.04267 * 6 5 3 29 29 H 1.07998 * 119.78907 * 179.97438 * 7 6 5 30 30 H 1.07998 * 119.97812 * 180.02562 * 8 7 6 31 31 H 0.97003 * 119.99948 * 179.97438 * 13 12 10 32 32 H 1.08002 * 120.19719 * 359.70656 * 18 5 3 33 33 H 1.08004 * 120.03587 * 0.02562 * 20 19 2 34 34 H 1.07998 * 119.96526 * 180.23666 * 21 20 19 35 35 H 1.07998 * 119.92999 * 179.72771 * 22 21 20 36 36 H 1.07996 * 119.96305 * 179.97438 * 23 22 21 37 37 H 1.08001 * 120.03363 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3493 1.1703 -0.1127 5 6 1.4060 2.4440 0.1371 6 6 0.1018 2.5592 -0.3568 7 6 -0.5900 3.7506 -0.2327 8 6 -0.0038 4.8370 0.3787 9 6 1.3074 4.7402 0.8812 10 6 1.9122 5.8539 1.5090 11 1 1.6238 6.8557 1.2263 12 6 2.8843 5.6581 2.4964 13 7 3.2736 4.4465 2.7998 14 14 3.6260 7.1266 3.3812 15 1 2.7525 7.5120 4.5186 16 1 4.9737 6.7680 3.8914 17 1 3.7414 8.2669 2.4370 18 6 2.0120 3.5310 0.7564 19 6 2.1643 -1.2111 -0.0005 20 6 3.5422 -1.2192 0.1731 21 6 4.2293 -2.4173 0.1763 22 6 3.5480 -3.6072 -0.0031 23 6 2.1766 -3.6023 -0.1810 24 6 1.4830 -2.4080 -0.1805 25 1 -0.3633 0.0141 -1.0276 26 1 -0.3633 -0.8970 0.5015 27 1 -0.3633 0.8828 0.5261 28 1 -0.3673 1.7133 -0.8372 29 1 -1.5960 3.8296 -0.6175 30 1 -0.5505 5.7637 0.4722 31 1 3.9477 4.3107 3.4840 32 1 3.0168 3.4452 1.1430 33 1 4.0755 -0.2899 0.3092 34 1 5.3003 -2.4246 0.3151 35 1 4.0881 -4.5425 -0.0045 36 1 1.6475 -4.5333 -0.3213 37 1 0.4121 -2.4048 -0.3199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042390114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:25 Heat of formation + Delta-G solvation = 45.685743 kcal Electronic energy + Delta-G solvation = -21002.017522 eV Core-core repulsion = 17903.233131 eV Total energy + Delta-G solvation = -3098.784391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54197 -38.31579 -37.06014 -35.44480 -33.76963 -31.06664 -30.65536 -29.54760 -29.07435 -26.96506 -25.39832 -23.45805 -22.39470 -21.12360 -20.93256 -19.27395 -17.61264 -17.15538 -16.36110 -15.71012 -15.47809 -15.26084 -14.88687 -14.24048 -14.01931 -13.69302 -13.43092 -13.08548 -12.88222 -12.73258 -12.51765 -12.47291 -12.00654 -11.66296 -11.55404 -11.15199 -11.11384 -10.96002 -10.56053 -10.41403 -9.98142 -9.94958 -9.76483 -9.36820 -8.82764 -8.70290 -7.78334 -7.58124 -7.46871 -6.71274 -4.53661 1.47909 1.63641 2.19742 2.75766 3.04171 3.07927 3.08615 3.18177 3.55662 3.88320 4.11679 4.56358 4.92153 5.10653 5.19858 5.24870 5.44296 5.45596 5.57886 5.63207 5.79296 5.80846 5.97323 6.04391 6.21155 6.27036 6.48420 6.59189 6.64280 6.80309 6.82463 6.91770 6.96587 7.19840 7.30892 7.42046 7.54658 7.65284 7.77397 7.93652 8.11884 8.45694 8.63009 8.76563 8.78782 10.13973 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.004657 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.127332 B = 6010.895275 C = 7055.693024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.557 5.557 3 C 0.568 3.432 4 O -0.518 6.518 5 C -0.133 4.133 6 C -0.228 4.228 7 C -0.104 4.104 8 C -0.201 4.201 9 C 0.091 3.909 10 C -0.454 4.454 11 H 0.080 0.920 12 C 0.067 3.933 13 N -0.802 5.802 14 Si 0.920 3.080 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.262 1.262 18 C -0.092 4.092 19 C 0.166 3.834 20 C -0.165 4.165 21 C -0.098 4.098 22 C -0.159 4.159 23 C -0.100 4.100 24 C -0.170 4.170 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.282 0.718 32 H 0.154 0.846 33 H 0.177 0.823 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 -10.308 -2.594 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.278 5.278 3 C 0.363 3.637 4 O -0.396 6.396 5 C -0.136 4.136 6 C -0.248 4.248 7 C -0.123 4.123 8 C -0.221 4.221 9 C 0.089 3.911 10 C -0.484 4.484 11 H 0.098 0.902 12 C -0.149 4.149 13 N -0.429 5.429 14 Si 0.744 3.256 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.186 1.186 18 C -0.112 4.112 19 C 0.070 3.930 20 C -0.184 4.184 21 C -0.116 4.116 22 C -0.178 4.178 23 C -0.118 4.118 24 C -0.191 4.191 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.193 0.807 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.681 -10.309 -2.485 10.938 hybrid contribution 0.078 0.405 0.443 0.605 sum -2.603 -9.903 -2.042 10.442 Atomic orbital electron populations 1.22717 0.78480 1.04984 1.02322 1.45443 1.07684 1.04366 1.70300 1.19148 0.86852 0.83585 0.74124 1.90421 1.14403 1.86388 1.48388 1.19410 0.95297 0.92670 1.06225 1.21109 0.95200 0.98610 1.09844 1.20476 0.98105 0.93522 1.00178 1.21233 0.95698 0.97910 1.07269 1.17649 0.90364 0.93024 0.90087 1.19609 1.17689 0.94112 1.16959 0.90198 1.25973 0.94975 0.97181 0.96753 1.69656 1.24991 1.21739 1.26496 0.86128 0.78506 0.81145 0.79787 1.19340 1.20126 1.18584 1.22169 1.01182 0.91050 0.96814 1.18107 0.92055 0.85166 0.97633 1.22572 0.93224 1.01541 1.01093 1.21140 0.99765 0.92112 0.98628 1.21044 0.94517 0.97938 1.04310 1.20812 0.94313 0.96935 0.99774 1.20805 0.99856 0.91369 1.07038 0.91812 0.91411 0.86961 0.86992 0.88665 0.88487 0.90629 0.82928 0.80707 0.86135 0.86668 0.86283 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 8.05 59.85 0.48 1.28 16 2 N -0.56 -10.13 3.10 -121.88 -0.38 -10.51 16 3 C 0.57 12.52 7.36 -12.32 -0.09 12.43 16 4 O -0.52 -12.52 13.24 5.31 0.07 -12.45 16 5 C -0.13 -3.06 5.52 -105.04 -0.58 -3.64 16 6 C -0.23 -4.59 7.50 -38.91 -0.29 -4.88 16 7 C -0.10 -2.12 10.01 -39.73 -0.40 -2.52 16 8 C -0.20 -4.60 9.78 -38.81 -0.38 -4.98 16 9 C 0.09 2.35 5.61 -106.87 -0.60 1.75 16 10 C -0.45 -11.66 9.08 -37.73 -0.34 -12.00 16 11 H 0.08 1.95 7.85 -52.48 -0.41 1.53 16 12 C 0.07 1.66 5.43 -17.34 -0.09 1.57 16 13 N -0.80 -20.69 10.27 55.55 0.57 -20.12 16 14 Si 0.92 18.52 29.56 -169.99 -5.02 13.50 16 15 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 16 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 18 C -0.09 -2.39 8.29 -38.44 -0.32 -2.71 16 19 C 0.17 2.88 6.48 -83.72 -0.54 2.34 16 20 C -0.16 -2.97 8.96 -39.39 -0.35 -3.32 16 21 C -0.10 -1.45 10.04 -39.61 -0.40 -1.84 16 22 C -0.16 -2.05 10.04 -39.54 -0.40 -2.44 16 23 C -0.10 -1.25 10.04 -39.61 -0.40 -1.65 16 24 C -0.17 -2.39 9.14 -39.39 -0.36 -2.75 16 25 H 0.06 0.79 7.25 -51.93 -0.38 0.41 16 26 H 0.07 0.79 6.56 -51.93 -0.34 0.44 16 27 H 0.11 1.72 4.94 -51.93 -0.26 1.46 16 28 H 0.11 1.87 4.46 -52.49 -0.23 1.63 16 29 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 32 H 0.15 4.30 5.54 -52.49 -0.29 4.01 16 33 H 0.18 3.61 4.75 -55.00 -0.26 3.35 16 34 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.44 6.40 -52.49 -0.34 1.10 16 LS Contribution 305.14 15.07 4.60 4.60 Total: -1.00 -28.46 305.14 -8.98 -37.44 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -3.76 Total: 10.91 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -5.06 Total: -23.37 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 0.19 Total: -30.63 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.07 Total: -12.45 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.46 -8.98 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042390114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.125 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds