Wall clock time and date at job start Tue Mar 31 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21302 * 119.99705 * 2 1 4 4 C 1.46783 * 119.99641 * 180.02562 * 2 1 3 5 5 C 1.40033 * 120.21484 * 0.26946 * 4 2 1 6 6 C 1.37869 * 119.85609 * 180.25254 * 5 4 2 7 7 F 1.35092 * 119.85861 * 179.74514 * 6 5 4 8 8 C 1.38806 * 120.28304 * 359.72997 * 6 5 4 9 9 C 1.38057 * 120.43465 * 0.02562 * 8 6 5 10 10 C 1.50700 * 119.93042 * 180.02562 * 9 8 6 11 11 N 1.46895 * 109.47474 * 259.98291 * 10 9 8 12 12 C 1.46904 * 110.99791 * 293.95527 * 11 10 9 13 13 C 1.46901 * 111.00194 * 169.99880 * 11 10 9 14 14 C 1.50697 * 109.46938 * 189.99450 * 13 11 10 15 15 H 1.08001 * 120.00123 * 0.02562 * 14 13 11 16 16 C 1.37881 * 119.99794 * 179.97438 * 14 13 11 17 17 N 1.31509 * 119.99988 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99999 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47367 * 59.99930 * 18 16 14 20 20 H 1.48498 * 109.47158 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47006 * 300.00292 * 18 16 14 22 22 C 1.38665 * 120.13918 * 359.97438 * 9 8 6 23 23 O 1.35632 * 120.14562 * 179.97438 * 22 9 8 24 24 H 1.08997 * 109.46818 * 269.99528 * 1 2 3 25 25 H 1.09004 * 109.46650 * 29.99120 * 1 2 3 26 26 H 1.08991 * 109.47476 * 149.99494 * 1 2 3 27 27 H 1.08006 * 120.07058 * 0.02562 * 5 4 2 28 28 H 1.08001 * 119.78425 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47220 * 19.98168 * 10 9 8 30 30 H 1.09004 * 109.47025 * 139.97883 * 10 9 8 31 31 H 1.08997 * 109.46789 * 59.99876 * 12 11 10 32 32 H 1.08999 * 109.47198 * 180.02562 * 12 11 10 33 33 H 1.08998 * 109.47146 * 299.99637 * 12 11 10 34 34 H 1.08992 * 109.47274 * 310.00193 * 13 11 10 35 35 H 1.09002 * 109.46565 * 70.00416 * 13 11 10 36 36 H 0.97006 * 120.00163 * 180.02562 * 17 16 14 37 37 H 0.96700 * 114.00200 * 89.99996 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2712 -0.0006 5 6 1.5452 -2.4865 -0.0068 6 6 2.2419 -3.6762 -0.0020 7 9 1.5708 -4.8486 -0.0028 8 6 3.6300 -3.6745 0.0033 9 6 4.3278 -2.4833 0.0044 10 6 5.8348 -2.4947 0.0096 11 7 6.3216 -2.2560 1.3748 12 6 5.9808 -0.9000 1.8257 13 6 7.7684 -2.4933 1.4669 14 6 8.1884 -2.4804 2.9141 15 1 7.4540 -2.3131 3.6881 16 6 9.5102 -2.6833 3.2501 17 7 10.4043 -2.8876 2.3077 18 14 10.0307 -2.6681 5.0441 19 1 9.3059 -3.7355 5.7790 20 1 11.4933 -2.9079 5.1371 21 1 9.7070 -1.3479 5.6422 22 6 3.6451 -1.2764 -0.0004 23 8 4.3305 -0.1060 0.0012 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8901 -0.5137 26 1 -0.3634 -0.8898 -0.5139 27 1 0.4652 -2.4918 -0.0116 28 1 4.1676 -4.6111 0.0066 29 1 6.1920 -3.4636 -0.3393 30 1 6.2063 -1.7111 -0.6509 31 1 4.8981 -0.7746 1.8137 32 1 6.3532 -0.7497 2.8390 33 1 6.4386 -0.1695 1.1587 34 1 8.0063 -3.4622 1.0280 35 1 8.3001 -1.7096 0.9273 36 1 11.3342 -3.0307 2.5441 37 1 4.5334 0.2322 -0.8817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050132677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:17 Heat of formation + Delta-G solvation = -89.081892 kcal Electronic energy + Delta-G solvation = -21920.100253 eV Core-core repulsion = 18384.702674 eV Total energy + Delta-G solvation = -3535.397579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.97890 -40.59414 -38.67333 -36.58752 -36.22995 -32.95214 -32.10670 -30.13180 -29.30455 -27.23198 -26.56722 -24.50635 -23.49536 -21.86807 -20.52090 -19.51492 -18.49098 -17.32935 -17.10431 -16.28960 -16.05706 -15.52353 -15.50413 -14.96380 -14.88881 -14.67798 -14.17939 -14.05719 -13.82168 -13.53655 -13.03075 -12.52246 -12.42301 -12.31420 -11.94673 -11.89790 -11.64533 -11.39299 -11.08447 -10.95018 -10.69568 -10.62556 -10.28951 -9.89622 -9.70358 -9.28050 -9.09362 -8.57654 -8.41716 -7.24548 -6.02436 -4.03402 0.38831 0.95731 2.21424 3.33800 3.35077 3.38454 3.42328 3.75354 4.06569 4.12599 4.43355 4.48931 4.71796 4.88539 5.01998 5.12292 5.15106 5.22426 5.34166 5.42891 5.58488 5.63509 5.71476 5.79168 6.01646 6.05880 6.35141 6.40356 6.55305 6.57814 6.98795 7.26741 7.33442 7.37030 7.64212 7.79620 8.06627 8.19246 8.53479 9.03841 9.60645 11.08492 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.004256 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.884667 B = 6578.111649 C = 7226.923175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.394 3.606 3 O -0.439 6.439 4 C -0.181 4.181 5 C -0.105 4.105 6 C 0.076 3.924 7 F -0.138 7.138 8 C -0.090 4.090 9 C -0.073 4.073 10 C 0.094 3.906 11 N -0.535 5.535 12 C 0.043 3.957 13 C 0.194 3.806 14 C -0.506 4.506 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.900 5.900 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.168 3.832 23 O -0.464 6.464 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.016 0.984 34 H 0.029 0.971 35 H -0.008 1.008 36 H 0.262 0.738 37 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.395 1.656 -8.686 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.271 3.729 3 O -0.313 6.313 4 C -0.183 4.183 5 C -0.125 4.125 6 C 0.057 3.943 7 F -0.117 7.117 8 C -0.110 4.110 9 C -0.074 4.074 10 C -0.034 4.034 11 N -0.259 5.259 12 C -0.105 4.105 13 C 0.069 3.931 14 C -0.545 4.545 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.540 5.540 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.122 3.878 23 O -0.275 6.275 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.010 0.990 36 H 0.071 0.929 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -19.135 1.766 -7.795 20.738 hybrid contribution 0.671 0.190 -0.018 0.698 sum -18.464 1.956 -7.814 20.145 Atomic orbital electron populations 1.22240 0.93848 1.04736 1.04846 1.22178 0.91425 0.87279 0.72004 1.90599 1.71893 1.33727 1.35100 1.20685 0.93637 0.94953 1.09025 1.21204 1.00655 0.90032 1.00571 1.17454 0.90125 0.81210 1.05552 1.91508 1.80324 1.45659 1.94196 1.21232 0.91854 0.99712 0.98167 1.20267 0.97696 0.91156 0.98282 1.20945 0.87825 1.01592 0.93045 1.62219 1.19180 1.26648 1.17887 1.22310 0.99416 0.88205 1.00535 1.19748 0.79758 0.96010 0.97604 1.21112 0.92979 1.48384 0.92031 0.91910 1.24975 0.96533 0.95426 0.97619 1.69944 1.02275 1.49417 1.32327 0.86550 0.77232 0.78629 0.84953 1.20157 1.21348 1.20259 1.18520 0.88225 0.86165 0.94924 1.85029 1.74630 1.35406 1.32477 0.88445 0.89404 0.89662 0.83761 0.83643 0.90132 0.94349 0.92513 0.91501 0.96514 0.95273 0.99012 0.92874 0.75525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 9.76 36.01 0.35 -1.03 16 2 C 0.39 4.44 7.22 -30.85 -0.22 4.22 16 3 O -0.44 -6.43 15.91 -16.39 -0.26 -6.69 16 4 C -0.18 -2.16 5.88 -104.95 -0.62 -2.78 16 5 C -0.11 -1.08 9.33 -39.04 -0.36 -1.45 16 6 C 0.08 0.90 7.28 -39.51 -0.29 0.61 16 7 F -0.14 -1.65 17.26 2.25 0.04 -1.61 16 8 C -0.09 -1.18 9.63 -39.44 -0.38 -1.56 16 9 C -0.07 -1.06 5.16 -104.53 -0.54 -1.60 16 10 C 0.09 1.62 4.99 -4.98 -0.02 1.59 16 11 N -0.53 -11.61 4.74 -245.83 -1.17 -12.78 16 12 C 0.04 0.91 7.86 60.07 0.47 1.38 16 13 C 0.19 5.04 4.72 -4.98 -0.02 5.01 16 14 C -0.51 -14.37 8.46 -34.44 -0.29 -14.67 16 15 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 18 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.17 2.34 5.44 -38.60 -0.21 2.13 16 23 O -0.46 -6.66 7.61 -40.52 -0.31 -6.96 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.41 6.45 -51.93 -0.34 0.07 16 27 H 0.14 1.02 6.35 -52.48 -0.33 0.68 16 28 H 0.15 1.78 8.03 -52.49 -0.42 1.36 16 29 H 0.08 1.33 7.78 -51.93 -0.40 0.93 16 30 H 0.04 0.64 7.83 -51.93 -0.41 0.23 16 31 H 0.06 1.11 4.99 -51.93 -0.26 0.85 16 32 H 0.07 1.52 6.76 -51.93 -0.35 1.17 16 33 H 0.02 0.34 7.71 -51.93 -0.40 -0.06 16 34 H 0.03 0.80 7.93 -51.93 -0.41 0.38 16 35 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.39 4.06 9.06 45.56 0.41 4.48 16 LS Contribution 313.59 15.07 4.73 4.73 Total: -1.00 -32.78 313.59 -7.18 -39.95 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -3.69 Total: -0.80 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.23 Total: -6.64 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.43 Total: -38.82 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.57 Total: -13.65 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.78 -7.18 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.129 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds