Wall clock time and date at job start Tue Mar 31 2020 05:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47044 * 2 1 4 4 C 1.34227 * 117.00400 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99788 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00426 * 180.02562 * 4 3 2 7 7 N 1.46508 * 109.47165 * 179.97438 * 6 4 3 8 8 C 1.36932 * 120.00368 * 264.28820 * 7 6 4 9 9 H 1.07998 * 120.00214 * 195.72977 * 8 7 6 10 10 C 1.38814 * 119.99819 * 15.72275 * 8 7 6 11 11 N 1.31625 * 120.00015 * 22.41781 * 10 8 7 12 12 Si 1.86798 * 120.00049 * 202.41528 * 10 8 7 13 13 H 1.48498 * 109.47153 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.47182 * 120.00096 * 12 10 8 15 15 H 1.48496 * 109.47324 * 239.99796 * 12 10 8 16 16 C 1.46503 * 119.99627 * 84.01273 * 7 6 4 17 17 C 1.50702 * 109.47210 * 89.99909 * 16 7 6 18 18 C 1.38244 * 119.97438 * 269.72818 * 17 16 7 19 19 C 1.38194 * 120.02306 * 179.72936 * 18 17 16 20 20 C 1.38468 * 119.97620 * 0.56141 * 19 18 17 21 21 F 1.35094 * 120.02515 * 179.68839 * 20 19 18 22 22 C 1.38456 * 119.94575 * 359.70707 * 20 19 18 23 23 C 1.38202 * 119.97491 * 0.02562 * 22 20 19 24 24 H 1.08992 * 109.47285 * 59.99797 * 1 2 3 25 25 H 1.08999 * 109.47036 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46614 * 299.99364 * 1 2 3 27 27 H 1.09003 * 109.46614 * 240.00636 * 2 1 3 28 28 H 1.08990 * 109.47677 * 120.00559 * 2 1 3 29 29 H 1.09004 * 109.47033 * 60.00324 * 6 4 3 30 30 H 1.08998 * 109.47583 * 299.99739 * 6 4 3 31 31 H 0.96995 * 119.99821 * 179.97438 * 11 10 8 32 32 H 1.09004 * 109.46917 * 210.00097 * 16 7 6 33 33 H 1.09002 * 109.47458 * 329.99903 * 16 7 6 34 34 H 1.08000 * 119.98908 * 359.97070 * 18 17 16 35 35 H 1.07999 * 120.01564 * 180.25179 * 19 18 17 36 36 H 1.07997 * 120.01477 * 179.97438 * 22 20 19 37 37 H 1.08002 * 119.98835 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 7 5.3837 2.8608 -0.0001 8 6 6.0737 2.9423 1.1798 9 1 7.1353 3.1411 1.1720 10 6 5.4088 2.7696 2.3860 11 7 4.2688 2.1127 2.4209 12 14 6.1320 3.4696 3.9597 13 1 7.4106 4.1596 3.6528 14 1 5.1773 4.4390 4.5549 15 1 6.3825 2.3671 4.9225 16 6 6.1081 2.6909 -1.2621 17 6 6.4304 4.0438 -1.8425 18 6 5.5417 4.6535 -2.7083 19 6 5.8336 5.8966 -3.2367 20 6 7.0222 6.5263 -2.9078 21 9 7.3114 7.7387 -3.4287 22 6 7.9140 5.9122 -2.0449 23 6 7.6174 4.6715 -1.5134 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 3.5851 3.4691 0.8905 30 1 3.5843 3.4702 -0.8895 31 1 3.8044 1.9917 3.2638 32 1 7.0332 2.1442 -1.0792 33 1 5.4889 2.1325 -1.9642 34 1 4.6171 4.1598 -2.9687 35 1 5.1374 6.3746 -3.9098 36 1 8.8415 6.4022 -1.7880 37 1 8.3127 4.1924 -0.8400 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050964532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:42 Heat of formation + Delta-G solvation = -84.971986 kcal Electronic energy + Delta-G solvation = -22014.082308 eV Core-core repulsion = 18478.862948 eV Total energy + Delta-G solvation = -3535.219360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.63503 -39.14208 -38.68336 -36.04395 -34.71086 -32.02790 -31.16319 -30.80259 -30.02577 -27.33718 -25.57562 -23.07409 -22.65454 -22.05143 -20.75355 -19.73519 -17.40364 -16.91847 -16.44809 -15.88578 -15.71185 -15.35084 -15.33542 -14.97163 -14.73955 -13.79424 -13.65909 -13.57281 -13.22581 -13.13810 -12.89429 -12.45766 -12.26688 -11.90296 -11.53333 -11.37798 -11.30982 -11.01008 -10.89085 -10.83580 -10.58714 -10.41674 -10.12575 -10.04468 -9.56523 -9.20814 -8.76652 -8.59618 -8.18619 -7.12760 -5.96972 -3.30033 1.51443 1.58174 3.32392 3.40971 3.42804 3.74202 3.88918 4.00517 4.44483 4.55814 5.03296 5.14110 5.21223 5.37942 5.38923 5.45762 5.49481 5.63576 5.67625 5.68769 5.88718 6.04010 6.22064 6.26116 6.30962 6.32601 6.38941 6.42661 6.52704 6.57845 6.77874 6.98873 7.04514 7.25811 7.63457 7.74050 8.11679 8.95359 9.32518 9.64492 10.06526 11.13713 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013855 B = 0.005855 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.378482 B = 4780.968201 C = 6290.070338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.065 3.935 3 O -0.380 6.380 4 C 0.465 3.535 5 O -0.507 6.507 6 C 0.189 3.811 7 N -0.559 5.559 8 C -0.256 4.256 9 H 0.081 0.919 10 C 0.003 3.997 11 N -0.901 5.901 12 Si 0.907 3.093 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.292 1.292 16 C 0.179 3.821 17 C -0.086 4.086 18 C -0.087 4.087 19 C -0.156 4.156 20 C 0.077 3.923 21 F -0.150 7.150 22 C -0.156 4.156 23 C -0.073 4.073 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.051 0.949 31 H 0.257 0.743 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 3.055 -8.778 9.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.010 4.010 3 O -0.298 6.298 4 C 0.305 3.695 5 O -0.392 6.392 6 C 0.060 3.940 7 N -0.277 5.277 8 C -0.384 4.384 9 H 0.099 0.901 10 C -0.195 4.195 11 N -0.545 5.545 12 Si 0.737 3.263 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.219 1.219 16 C 0.053 3.947 17 C -0.089 4.089 18 C -0.106 4.106 19 C -0.175 4.175 20 C 0.057 3.943 21 F -0.129 7.129 22 C -0.175 4.175 23 C -0.092 4.092 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.503 2.721 -8.625 9.169 hybrid contribution 0.311 0.221 1.037 1.105 sum -1.192 2.943 -7.589 8.226 Atomic orbital electron populations 1.21753 0.94170 1.01743 1.02829 1.22617 0.93972 0.83105 1.01317 1.86540 1.27690 1.29903 1.85629 1.25540 0.78558 0.95077 0.70288 1.90466 1.60047 1.43177 1.45532 1.20318 0.83499 0.88577 1.01645 1.43926 0.99852 1.81939 1.01977 1.19275 0.93788 1.42705 0.82668 0.90145 1.24827 0.97816 0.98902 0.97982 1.69883 1.18436 1.40338 1.25853 0.86146 0.78471 0.78592 0.83095 1.20191 1.21427 1.21863 1.19816 0.97352 0.89433 0.88148 1.21128 0.93251 0.99991 0.94514 1.20914 0.99174 0.94009 0.96521 1.21035 0.96400 0.96830 1.03252 1.17661 0.96158 0.81942 0.98495 1.91442 1.93753 1.42242 1.85486 1.21091 1.00026 0.97027 0.99329 1.20946 0.97054 0.93581 0.97569 0.92169 0.91442 0.91864 0.92916 0.92141 0.86785 0.93098 0.93256 0.91754 0.93110 0.85604 0.85515 0.85495 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.29 37.16 0.38 -1.57 16 2 C 0.06 1.16 6.19 37.16 0.23 1.38 16 3 O -0.38 -8.05 10.22 -39.25 -0.40 -8.46 16 4 C 0.47 11.05 6.17 36.00 0.22 11.28 16 5 O -0.51 -13.57 15.89 -18.75 -0.30 -13.87 16 6 C 0.19 4.27 5.49 -5.19 -0.03 4.24 16 7 N -0.56 -12.95 2.02 -175.97 -0.35 -13.30 16 8 C -0.26 -6.55 9.66 -15.06 -0.15 -6.69 16 9 H 0.08 2.00 7.92 -52.49 -0.42 1.59 16 10 C 0.00 0.08 4.86 -17.43 -0.08 -0.01 16 11 N -0.90 -24.94 9.30 55.49 0.52 -24.43 16 12 Si 0.91 21.12 29.61 -169.99 -5.03 16.08 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 C 0.18 3.47 5.76 -5.19 -0.03 3.44 16 17 C -0.09 -1.44 5.46 -104.62 -0.57 -2.02 16 18 C -0.09 -1.32 9.70 -39.59 -0.38 -1.70 16 19 C -0.16 -2.22 10.03 -39.51 -0.40 -2.62 16 20 C 0.08 1.15 7.30 -39.42 -0.29 0.86 16 21 F -0.15 -2.25 17.27 2.25 0.04 -2.21 16 22 C -0.16 -2.30 10.03 -39.51 -0.40 -2.70 16 23 C -0.07 -1.16 9.70 -39.59 -0.38 -1.54 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 28 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 29 H 0.11 2.81 6.34 -51.93 -0.33 2.48 16 30 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.06 1.26 7.98 -51.93 -0.41 0.84 16 33 H 0.05 0.95 8.01 -51.93 -0.42 0.53 16 34 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -30.22 325.87 -7.43 -37.65 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.94 Total: 1.27 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.87 Total: 2.35 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.16 Total: -37.73 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.70 Total: -22.32 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.22 -7.43 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050964532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.325 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds