Wall clock time and date at job start Tue Mar 31 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34781 * 119.99623 * 2 1 4 4 O 1.21616 * 119.99734 * 185.88056 * 3 2 1 5 5 C 1.47378 * 119.99933 * 5.88032 * 3 2 1 6 6 C 1.39253 * 120.28723 * 312.63485 * 5 3 2 7 7 C 1.38209 * 120.09204 * 180.28109 * 6 5 3 8 8 C 1.38841 * 120.67704 * 359.74538 * 7 6 5 9 9 C 1.37592 * 120.57737 * 359.97438 * 8 7 6 10 10 C 1.40709 * 119.87769 * 359.97438 * 9 8 7 11 11 C 1.40873 * 120.32411 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99907 * 151.65148 * 11 10 9 13 13 C 1.40284 * 120.00175 * 331.64675 * 11 10 9 14 14 N 1.30619 * 119.99964 * 334.17173 * 13 11 10 15 15 Si 1.86801 * 119.99816 * 154.17142 * 13 11 10 16 16 H 1.48503 * 109.46771 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.46976 * 300.00220 * 15 13 11 18 18 H 1.48499 * 109.47253 * 60.00146 * 15 13 11 19 19 C 1.39800 * 120.00361 * 179.97438 * 2 1 3 20 20 C 1.38902 * 120.07456 * 187.56423 * 19 2 1 21 21 C 1.38105 * 119.92415 * 179.76257 * 20 19 2 22 22 C 1.38286 * 120.07534 * 0.49301 * 21 20 19 23 23 C 1.38285 * 120.14788 * 359.75977 * 22 21 20 24 24 C 1.38106 * 120.07411 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47187 * 84.79662 * 1 2 3 26 26 H 1.09001 * 109.46529 * 204.79285 * 1 2 3 27 27 H 1.08997 * 109.47344 * 324.78732 * 1 2 3 28 28 H 1.07993 * 119.95684 * 0.02976 * 6 5 3 29 29 H 1.07994 * 119.66261 * 179.76917 * 7 6 5 30 30 H 1.08001 * 119.71101 * 180.02562 * 8 7 6 31 31 H 1.07993 * 120.05846 * 180.02562 * 9 8 7 32 32 H 0.97005 * 120.00106 * 354.62905 * 14 13 11 33 33 H 1.07998 * 120.04220 * 359.97438 * 20 19 2 34 34 H 1.08002 * 119.96691 * 180.25288 * 21 20 19 35 35 H 1.08007 * 119.93020 * 179.74639 * 22 21 20 36 36 H 1.08007 * 119.96617 * 179.97438 * 23 22 21 37 37 H 1.07996 * 120.03707 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3502 1.1701 -0.1079 5 6 1.4077 2.4402 0.1308 6 6 0.2773 2.6837 -0.6452 7 6 -0.4019 3.8812 -0.5235 8 6 0.0271 4.8511 0.3727 9 6 1.1371 4.6372 1.1571 10 6 1.8460 3.4262 1.0534 11 6 2.9840 3.1975 1.8515 12 1 3.2547 2.1897 2.1301 13 6 3.7659 4.2789 2.2845 14 7 3.7848 5.3884 1.5955 15 14 4.7800 4.1319 3.8464 16 1 5.5104 5.4029 4.0836 17 1 3.8813 3.8559 4.9959 18 1 5.7539 3.0203 3.7015 19 6 2.1641 -1.2107 0.0005 20 6 3.5441 -1.2175 0.1588 21 6 4.2310 -2.4156 0.1638 22 6 3.5477 -3.6069 0.0012 23 6 2.1745 -3.6033 -0.1618 24 6 1.4809 -2.4090 -0.1633 25 1 -0.3633 0.0932 -1.0234 26 1 -0.3632 -0.9330 0.4310 27 1 -0.3634 0.8396 0.5925 28 1 -0.0667 1.9376 -1.3460 29 1 -1.2756 4.0643 -1.1313 30 1 -0.5157 5.7811 0.4554 31 1 1.4632 5.3972 1.8517 32 1 3.3212 5.4391 0.7449 33 1 4.0789 -0.2873 0.2812 34 1 5.3035 -2.4220 0.2908 35 1 4.0878 -4.5422 0.0014 36 1 1.6439 -4.5354 -0.2889 37 1 0.4086 -2.4068 -0.2911 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058248144.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:31 Heat of formation + Delta-G solvation = 24.496099 kcal Electronic energy + Delta-G solvation = -21412.971281 eV Core-core repulsion = 18313.268038 eV Total energy + Delta-G solvation = -3099.703243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35371 -38.29248 -37.01426 -35.21881 -34.00995 -30.91642 -30.54763 -29.68165 -28.88314 -26.70356 -25.37075 -23.27668 -22.32638 -21.22101 -21.00825 -19.25962 -17.90035 -17.03862 -16.58357 -15.79697 -15.29259 -15.04206 -14.44018 -14.21899 -14.02253 -13.86252 -13.53244 -13.06725 -12.70999 -12.65031 -12.39395 -12.28479 -12.12387 -11.81661 -11.46028 -11.36294 -11.02818 -10.91160 -10.73583 -10.45341 -10.14228 -9.84064 -9.66947 -9.12902 -8.68309 -8.56991 -7.85078 -7.78844 -7.49890 -7.34376 -4.62050 1.59983 1.72454 2.27233 2.65535 3.11817 3.21265 3.31357 3.33188 3.60372 3.92968 4.20397 4.42221 5.01993 5.17143 5.27441 5.27986 5.37324 5.55609 5.58878 5.74786 5.84929 5.89703 5.94261 5.99564 6.07848 6.30214 6.40565 6.65218 6.66234 6.70265 6.87512 6.92610 6.94634 7.14873 7.39802 7.49187 7.54613 7.60589 7.71457 7.82553 8.01103 8.06844 8.53852 8.65352 8.91000 9.86783 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.006426 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.438883 B = 4356.099823 C = 5810.769267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.563 5.563 3 C 0.582 3.418 4 O -0.510 6.510 5 C -0.269 4.269 6 C -0.044 4.044 7 C -0.262 4.262 8 C -0.070 4.070 9 C -0.209 4.209 10 C 0.128 3.872 11 C -0.481 4.481 12 H 0.081 0.919 13 C 0.040 3.960 14 N -0.776 5.776 15 Si 1.064 2.936 16 H -0.271 1.271 17 H -0.272 1.272 18 H -0.272 1.272 19 C 0.170 3.830 20 C -0.168 4.168 21 C -0.097 4.097 22 C -0.162 4.162 23 C -0.100 4.100 24 C -0.175 4.175 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.301 0.699 33 H 0.179 0.821 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.455 -10.111 -0.797 11.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.286 5.286 3 C 0.377 3.623 4 O -0.387 6.387 5 C -0.274 4.274 6 C -0.063 4.063 7 C -0.281 4.281 8 C -0.089 4.089 9 C -0.228 4.228 10 C 0.124 3.876 11 C -0.507 4.507 12 H 0.099 0.901 13 C -0.184 4.184 14 N -0.397 5.397 15 Si 0.887 3.113 16 H -0.196 1.196 17 H -0.198 1.198 18 H -0.197 1.197 19 C 0.074 3.926 20 C -0.188 4.188 21 C -0.116 4.116 22 C -0.181 4.181 23 C -0.118 4.118 24 C -0.196 4.196 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.196 0.804 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.844 -9.081 0.113 9.516 hybrid contribution -1.335 -0.975 -1.213 2.050 sum -4.180 -10.056 -1.100 10.945 Atomic orbital electron populations 1.22073 0.78899 1.03746 1.02206 1.45682 1.07397 1.04547 1.70927 1.18699 0.86800 0.82948 0.73848 1.90396 1.14411 1.86040 1.47850 1.19145 1.03137 0.97052 1.08027 1.20796 0.92988 0.96177 0.96309 1.20218 1.04257 0.96449 1.07221 1.20747 0.95790 0.97009 0.95309 1.21162 0.98080 0.99614 1.03941 1.17341 0.91970 0.89877 0.88425 1.20677 1.07532 0.97140 1.25382 0.90098 1.27174 0.97061 0.91125 1.03031 1.70383 1.29875 1.27309 1.12150 0.83653 0.76421 0.77505 0.73770 1.19576 1.19771 1.19707 1.18127 0.92070 0.85276 0.97134 1.22688 0.93285 1.01679 1.01118 1.21144 0.99707 0.92156 0.98608 1.21014 0.94473 0.97865 1.04791 1.20789 0.94301 0.96871 0.99876 1.20798 0.99704 0.91425 1.07656 0.92286 0.91109 0.89196 0.88575 0.88770 0.88804 0.87366 0.88484 0.80436 0.86253 0.86805 0.86437 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 8.45 59.85 0.51 1.60 16 2 N -0.56 -10.78 3.10 -122.05 -0.38 -11.16 16 3 C 0.58 13.43 6.48 -12.54 -0.08 13.35 16 4 O -0.51 -13.08 12.22 5.26 0.06 -13.02 16 5 C -0.27 -6.35 5.03 -104.37 -0.52 -6.88 16 6 C -0.04 -0.91 7.69 -39.21 -0.30 -1.21 16 7 C -0.26 -5.31 10.03 -39.37 -0.39 -5.70 16 8 C -0.07 -1.49 10.01 -39.59 -0.40 -1.89 16 9 C -0.21 -5.02 7.99 -38.88 -0.31 -5.33 16 10 C 0.13 3.28 5.25 -106.54 -0.56 2.72 16 11 C -0.48 -12.68 7.78 -37.82 -0.29 -12.98 16 12 H 0.08 2.20 7.07 -52.48 -0.37 1.83 16 13 C 0.04 1.01 4.91 -17.30 -0.08 0.93 16 14 N -0.78 -20.12 12.43 55.56 0.69 -19.43 16 15 Si 1.06 21.52 30.01 -169.99 -5.10 16.41 16 16 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 17 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 C 0.17 3.11 6.48 -83.73 -0.54 2.56 16 20 C -0.17 -3.21 8.97 -39.38 -0.35 -3.56 16 21 C -0.10 -1.53 10.04 -39.61 -0.40 -1.93 16 22 C -0.16 -2.22 10.04 -39.55 -0.40 -2.61 16 23 C -0.10 -1.33 10.04 -39.61 -0.40 -1.72 16 24 C -0.17 -2.60 9.15 -39.38 -0.36 -2.96 16 25 H 0.06 0.78 7.04 -51.93 -0.37 0.41 16 26 H 0.07 0.86 6.26 -51.93 -0.33 0.54 16 27 H 0.09 1.43 6.13 -51.93 -0.32 1.12 16 28 H 0.10 1.72 6.08 -52.49 -0.32 1.40 16 29 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.11 2.66 6.74 -52.49 -0.35 2.30 16 32 H 0.30 8.05 6.85 -40.82 -0.28 7.77 16 33 H 0.18 3.91 4.71 -55.25 -0.26 3.65 16 34 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 37 H 0.12 1.51 6.27 -52.49 -0.33 1.18 16 LS Contribution 304.88 15.07 4.59 4.59 Total: -1.00 -28.61 304.88 -8.85 -37.46 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -3.83 Total: 10.77 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -4.89 Total: -25.62 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.31 Total: -30.59 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.06 Total: -13.02 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.10 Total: 16.41 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.61 -8.85 -37.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058248144.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.955 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds