Wall clock time and date at job start Tue Mar 31 2020 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35998 * 117.00419 * 2 1 4 4 C 1.38485 * 120.08343 * 359.97389 * 3 2 1 5 5 C 1.38303 * 120.02728 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.90505 * 180.02562 * 5 4 3 7 7 N 1.46892 * 109.47026 * 90.00151 * 6 5 4 8 8 C 1.46896 * 111.00131 * 293.95448 * 7 6 5 9 9 C 1.46898 * 111.00133 * 169.99647 * 7 6 5 10 10 C 1.50694 * 109.47545 * 190.00195 * 9 7 6 11 11 H 1.08000 * 120.00229 * 359.97438 * 10 9 7 12 12 C 1.37884 * 120.00412 * 180.02562 * 10 9 7 13 13 N 1.31520 * 119.99573 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00101 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47342 * 60.00108 * 14 12 10 16 16 H 1.48502 * 109.46830 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47196 * 299.99946 * 14 12 10 18 18 C 1.38265 * 120.18820 * 359.97438 * 5 4 3 19 19 C 1.38205 * 120.16961 * 359.73881 * 18 5 4 20 20 C 1.38799 * 119.96973 * 0.53567 * 19 18 5 21 21 S 1.76199 * 120.09524 * 179.74608 * 20 19 18 22 22 C 1.81405 * 102.99690 * 359.72285 * 21 20 19 23 23 H 1.09003 * 109.47893 * 180.02562 * 1 2 3 24 24 H 1.09012 * 109.47257 * 300.00397 * 1 2 3 25 25 H 1.08998 * 109.47440 * 60.00161 * 1 2 3 26 26 H 1.08005 * 119.98613 * 0.02562 * 4 3 2 27 27 H 1.09006 * 109.46874 * 210.00147 * 6 5 4 28 28 H 1.09000 * 109.47245 * 330.00104 * 6 5 4 29 29 H 1.08996 * 109.47628 * 59.99965 * 8 7 6 30 30 H 1.09000 * 109.47250 * 180.02562 * 8 7 6 31 31 H 1.09002 * 109.46804 * 299.99799 * 8 7 6 32 32 H 1.09007 * 109.47147 * 310.00497 * 9 7 6 33 33 H 1.09000 * 109.47226 * 69.99978 * 9 7 6 34 34 H 0.96993 * 119.99665 * 180.02562 * 13 12 10 35 35 H 1.08002 * 119.91901 * 180.02562 * 18 5 4 36 36 H 1.07998 * 120.01741 * 180.26204 * 19 18 5 37 37 H 1.09000 * 109.47133 * 299.99798 * 22 21 20 38 38 H 1.08998 * 109.47280 * 60.00548 * 22 21 20 39 39 H 1.09008 * 109.46557 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2940 2.3743 -0.0005 5 6 1.9232 3.6059 -0.0011 6 6 1.1016 4.8693 -0.0011 7 7 0.8353 5.2801 1.3838 8 6 -0.0246 4.3041 2.0664 9 6 0.2452 6.6246 1.4299 10 6 0.2131 7.1106 2.8560 11 1 0.5927 6.4833 3.6489 12 6 -0.3018 8.3557 3.1487 13 7 -0.7645 9.1195 2.1831 14 14 -0.3422 8.9578 4.9165 15 1 1.0410 9.0061 5.4547 16 1 -0.9386 10.3170 4.9629 17 1 -1.1605 8.0292 5.7370 18 6 3.3038 3.6814 -0.0005 19 6 4.0625 2.5262 0.0060 20 6 3.4382 1.2866 0.0008 21 16 4.4023 -0.1883 0.0023 22 6 6.1050 0.4374 0.0027 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.2154 2.3191 -0.0006 27 1 1.6496 5.6589 -0.5154 28 1 0.1573 4.6886 -0.5145 29 1 0.4680 3.3319 2.0789 30 1 -0.2064 4.6329 3.0896 31 1 -0.9740 4.2236 1.5369 32 1 0.8459 7.3059 0.8273 33 1 -0.7702 6.5895 1.0351 34 1 -1.1264 9.9955 2.3889 35 1 3.7906 4.6454 -0.0005 36 1 5.1407 2.5880 0.0107 37 1 6.2693 1.0444 -0.8877 38 1 6.2685 1.0456 0.8923 39 1 6.8005 -0.4020 0.0041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058528208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:48 Heat of formation + Delta-G solvation = -6.713339 kcal Electronic energy + Delta-G solvation = -19571.284407 eV Core-core repulsion = 16605.671772 eV Total energy + Delta-G solvation = -2965.612634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.12823 -37.84045 -36.15702 -32.79522 -31.46522 -30.29292 -28.98771 -27.75308 -27.14677 -26.38525 -23.98166 -22.11445 -21.56898 -20.23666 -18.07429 -16.98466 -16.43401 -16.03018 -15.80421 -15.09438 -14.91307 -14.46335 -14.42483 -14.02788 -13.86138 -13.82419 -13.51051 -12.88783 -12.63781 -12.41985 -11.99867 -11.89259 -11.86871 -11.37942 -11.16098 -11.04791 -10.93350 -10.85249 -10.66686 -10.46630 -10.19090 -9.87848 -9.49339 -9.23680 -8.45870 -8.40506 -7.32370 -7.16870 -6.04882 -4.06315 1.24974 1.51060 1.51771 2.42967 3.23594 3.32468 3.36382 3.39597 3.73264 4.41764 4.78931 4.87186 4.91387 4.92129 5.07595 5.11316 5.18276 5.25735 5.31790 5.34090 5.44320 5.49782 5.56645 5.73697 5.90772 6.09756 6.19317 6.20778 6.29514 6.33485 6.71530 6.77598 6.82604 7.23639 7.29494 7.33405 7.76643 8.03891 8.15547 8.50481 9.01011 9.57889 11.05968 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025040 B = 0.003651 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.932800 B = 7668.070556 C = 8123.796913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.142 3.858 4 C -0.184 4.184 5 C -0.022 4.022 6 C 0.087 3.913 7 N -0.533 5.533 8 C 0.035 3.965 9 C 0.193 3.807 10 C -0.508 4.508 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.117 4.117 19 C -0.097 4.097 20 C -0.127 4.127 21 S -0.106 6.106 22 C -0.150 4.150 23 H 0.099 0.901 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.130 0.870 27 H 0.080 0.920 28 H 0.033 0.967 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.009 0.991 32 H 0.031 0.969 33 H -0.009 1.009 34 H 0.262 0.738 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 -17.326 -6.685 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.092 3.908 4 C -0.205 4.205 5 C -0.025 4.025 6 C -0.041 4.041 7 N -0.257 5.257 8 C -0.114 4.114 9 C 0.068 3.932 10 C -0.546 4.546 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.137 4.137 19 C -0.121 4.121 20 C -0.240 4.240 21 S 0.134 5.866 22 C -0.319 4.319 23 H 0.117 0.883 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.147 0.853 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.028 0.972 32 H 0.049 0.951 33 H 0.009 0.991 34 H 0.072 0.928 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.950 -18.513 -6.465 21.159 hybrid contribution -0.760 1.968 0.532 2.176 sum 7.190 -16.544 -5.932 18.990 Atomic orbital electron populations 1.23061 0.78371 1.03773 1.01605 1.86096 1.21238 1.26389 1.88686 1.18268 0.90085 0.84580 0.97850 1.21075 0.99836 0.91411 1.08208 1.19829 0.93975 0.94223 0.94462 1.21091 0.97039 0.93421 0.92539 1.62144 1.47769 1.04543 1.11228 1.22286 0.93552 0.95092 1.00452 1.19761 0.92637 0.82859 0.97948 1.21116 1.39745 1.01062 0.92721 0.91883 1.24986 0.95437 0.96669 0.97479 1.69948 1.41584 1.10532 1.31831 0.86549 0.78392 0.77715 0.84698 1.20127 1.21338 1.20277 1.20883 0.93182 0.98032 1.01592 1.20947 0.99482 0.90705 1.00918 1.20807 0.93309 0.97082 1.12827 1.85495 0.99232 1.08498 1.93344 1.23684 0.96790 1.05862 1.05544 0.88301 0.92439 0.92667 0.85253 0.90140 0.94938 0.93402 0.90677 0.97226 0.95115 0.99072 0.92845 0.85224 0.85496 0.89954 0.89847 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.24 9.87 -19.73 -0.19 -4.44 16 3 C 0.14 2.09 6.69 -39.07 -0.26 1.83 16 4 C -0.18 -2.72 6.95 -39.47 -0.27 -3.00 16 5 C -0.02 -0.35 4.89 -104.59 -0.51 -0.86 16 6 C 0.09 1.56 5.11 -4.98 -0.03 1.53 16 7 N -0.53 -11.46 4.74 -245.84 -1.17 -12.63 16 8 C 0.03 0.69 8.95 60.06 0.54 1.22 16 9 C 0.19 4.98 4.72 -4.98 -0.02 4.95 16 10 C -0.51 -14.22 8.46 -34.44 -0.29 -14.51 16 11 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 12 C 0.06 1.57 5.46 -17.81 -0.10 1.47 16 13 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 14 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.12 -1.72 9.69 -39.58 -0.38 -2.10 16 19 C -0.10 -1.29 9.36 -39.39 -0.37 -1.66 16 20 C -0.13 -1.81 6.12 -38.95 -0.24 -2.05 16 21 S -0.11 -1.30 22.05 -107.50 -2.37 -3.67 16 22 C -0.15 -1.25 9.15 101.05 0.92 -0.32 16 23 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.56 7.67 -51.92 -0.40 0.16 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.13 1.75 6.27 -52.48 -0.33 1.42 16 27 H 0.08 1.41 7.87 -51.93 -0.41 1.00 16 28 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16 29 H 0.05 0.85 6.16 -51.93 -0.32 0.53 16 30 H 0.07 1.59 6.76 -51.93 -0.35 1.24 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 33 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 36 H 0.13 1.36 5.88 -52.49 -0.31 1.05 16 37 H 0.08 0.62 7.76 -51.92 -0.40 0.22 16 38 H 0.08 0.67 7.74 -51.92 -0.40 0.26 16 39 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -31.18 331.96 -8.80 -39.98 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.77 Total: -2.75 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -0.02 Total: -12.22 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.43 Total: -38.46 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.19 Total: -4.44 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.37 Total: -3.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.18 -8.80 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058528208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.266 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds