Wall clock time and date at job start Tue Mar 31 2020 05:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47271 * 2 1 4 4 C 1.46491 * 120.00214 * 277.52393 * 3 2 1 5 5 C 1.50700 * 109.47615 * 270.00291 * 4 3 2 6 6 H 1.08003 * 119.99803 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00277 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99995 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99972 * 180.02562 * 7 5 4 10 10 H 1.48488 * 109.47198 * 59.99849 * 9 7 5 11 11 H 1.48502 * 109.46902 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47015 * 299.99547 * 9 7 5 13 13 C 1.34780 * 119.99658 * 97.52870 * 3 2 1 14 14 O 1.21585 * 119.99765 * 185.78068 * 13 3 2 15 15 C 1.47602 * 120.00040 * 5.78320 * 13 3 2 16 16 C 1.39723 * 120.08400 * 314.16685 * 15 13 3 17 17 C 1.37723 * 119.95413 * 180.02562 * 16 15 13 18 18 C 1.38924 * 120.11806 * 0.02562 * 17 16 15 19 19 O 1.35772 * 119.91941 * 180.27622 * 18 17 16 20 20 C 1.42899 * 116.99973 * 359.71990 * 19 18 17 21 21 C 1.39166 * 120.16257 * 359.97438 * 18 17 16 22 22 F 1.35104 * 119.97728 * 180.02562 * 21 18 17 23 23 C 1.37897 * 120.04678 * 359.97438 * 21 18 17 24 24 H 1.08997 * 109.47810 * 189.52999 * 1 2 3 25 25 H 1.09001 * 109.47013 * 309.53348 * 1 2 3 26 26 H 1.09008 * 109.47027 * 69.52816 * 1 2 3 27 27 H 1.09010 * 109.46754 * 240.00064 * 2 1 3 28 28 H 1.08995 * 109.47088 * 120.00426 * 2 1 3 29 29 H 1.09003 * 109.47563 * 30.00466 * 4 3 2 30 30 H 1.09001 * 109.47166 * 149.99990 * 4 3 2 31 31 H 0.96995 * 120.00260 * 179.97438 * 8 7 5 32 32 H 1.08009 * 120.01764 * 359.97438 * 16 15 13 33 33 H 1.08008 * 119.94291 * 180.02562 * 17 16 15 34 34 H 1.08999 * 109.46839 * 60.00333 * 20 19 18 35 35 H 1.08994 * 109.46804 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.47368 * 300.00390 * 20 19 18 37 37 H 1.07995 * 120.05784 * 180.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1059 2.1272 -1.2577 5 6 3.4639 1.9134 -1.8751 6 1 4.1894 1.2851 -1.3799 7 6 3.7805 2.5209 -3.0717 8 7 2.8973 3.2865 -3.6745 9 14 5.4636 2.2553 -3.8374 10 1 5.6625 0.8086 -4.1059 11 1 5.5527 3.0127 -5.1117 12 1 6.5136 2.7344 -2.9030 13 6 2.3871 1.9655 1.1572 14 8 2.6921 3.1424 1.1738 15 6 2.4208 1.1767 2.4043 16 6 1.3555 0.3327 2.7282 17 6 1.3895 -0.4017 3.8928 18 6 2.4811 -0.3045 4.7466 19 8 2.5130 -1.0346 5.8909 20 6 1.3883 -1.8755 6.1554 21 6 3.5449 0.5346 4.4288 22 9 4.6048 0.6259 5.2616 23 6 3.5183 1.2722 3.2640 24 1 -0.3634 -1.0134 0.1701 25 1 -0.3633 0.6541 0.7926 26 1 -0.3633 0.3594 -0.9628 27 1 1.8932 -0.5139 -0.8901 28 1 1.8932 -0.5139 0.8899 29 1 1.3354 1.7749 -1.9436 30 1 1.9592 3.1893 -1.0612 31 1 3.1201 3.7142 -4.5161 32 1 0.5055 0.2570 2.0661 33 1 0.5661 -1.0544 4.1428 34 1 1.2789 -2.6002 5.3486 35 1 1.5414 -2.4010 7.0980 36 1 0.4867 -1.2665 6.2215 37 1 4.3439 1.9231 3.0170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061669015.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:18 Heat of formation + Delta-G solvation = -80.563324 kcal Electronic energy + Delta-G solvation = -21985.642958 eV Core-core repulsion = 18450.614772 eV Total energy + Delta-G solvation = -3535.028186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.77761 -40.41108 -39.21470 -36.96345 -35.48695 -32.86984 -30.98985 -30.55346 -30.06094 -27.94140 -26.90323 -23.81219 -23.09280 -22.82676 -22.02888 -19.17221 -18.38443 -17.25052 -17.01873 -16.44086 -16.31436 -15.85982 -15.47983 -15.13988 -15.03762 -14.43804 -14.41196 -14.15951 -13.58331 -13.45670 -12.82697 -12.59727 -12.52026 -12.19965 -12.11777 -11.96726 -11.61979 -11.37486 -11.26916 -11.12060 -10.89646 -10.72949 -10.53959 -10.15864 -9.68631 -9.12949 -9.03844 -8.45202 -8.25031 -7.72979 -6.06345 -4.11504 0.92134 1.05069 2.89331 3.11248 3.31539 3.36039 3.38797 3.58713 3.91554 4.15439 4.43043 4.52748 4.75185 4.80205 4.84904 4.98802 5.09548 5.17043 5.28085 5.29218 5.41991 5.53998 5.61965 5.72320 5.86860 5.98028 5.98846 6.19644 6.26130 6.43701 6.47836 7.02001 7.06635 7.41213 7.48592 7.89799 8.20246 8.32555 8.83973 8.99869 9.53744 11.01714 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.004468 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.397336 B = 6265.820307 C = 6878.419402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 N -0.587 5.587 4 C 0.246 3.754 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.550 3.450 14 O -0.533 6.533 15 C -0.121 4.121 16 C -0.074 4.074 17 C -0.190 4.190 18 C 0.105 3.895 19 O -0.310 6.310 20 C 0.026 3.974 21 C 0.063 3.937 22 F -0.132 7.132 23 C -0.068 4.068 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -12.157 15.509 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.029 4.029 3 N -0.318 5.318 4 C 0.127 3.873 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.336 3.664 14 O -0.411 6.411 15 C -0.125 4.125 16 C -0.092 4.092 17 C -0.208 4.208 18 C 0.058 3.942 19 O -0.223 6.223 20 C -0.069 4.069 21 C 0.043 3.957 22 F -0.111 7.111 23 C -0.087 4.087 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.141 -11.420 15.483 20.196 hybrid contribution 0.856 -0.295 -0.440 1.006 sum -5.285 -11.715 15.044 19.786 Atomic orbital electron populations 1.22357 0.96731 1.01377 1.02837 1.21677 0.93594 0.84400 1.03228 1.48180 1.61858 1.13338 1.08396 1.19323 0.97104 0.92858 0.78027 1.21403 0.99487 1.30136 1.05893 0.92426 1.24923 0.97346 0.94830 0.96859 1.69917 1.34585 1.31205 1.17565 0.86556 0.84256 0.78186 0.78430 1.20219 1.21147 1.20134 1.17973 0.78607 0.86862 0.82938 1.90782 1.48866 1.15603 1.85823 1.19990 0.95522 0.99827 0.97112 1.21772 0.98652 0.92938 0.95885 1.21039 0.98607 1.05053 0.96148 1.19160 0.94318 0.93206 0.87519 1.86092 1.43590 1.55398 1.37189 1.23129 0.88016 0.93358 1.02426 1.16740 0.85413 1.01914 0.91603 1.91502 1.53925 1.95308 1.70318 1.21052 0.99329 0.97409 0.90943 0.91862 0.92420 0.91493 0.89953 0.90739 0.94723 0.93569 0.92609 0.83109 0.84127 0.92261 0.88030 0.92323 0.83136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.14 37.15 0.34 -1.84 16 2 C 0.10 1.48 5.59 -4.04 -0.02 1.46 16 3 N -0.59 -12.24 2.46 -176.27 -0.43 -12.68 16 4 C 0.25 6.31 5.22 -5.20 -0.03 6.29 16 5 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 9 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.55 11.66 7.26 -12.44 -0.09 11.57 16 14 O -0.53 -13.62 16.54 5.29 0.09 -13.53 16 15 C -0.12 -2.00 5.07 -104.96 -0.53 -2.54 16 16 C -0.07 -0.95 7.40 -39.22 -0.29 -1.24 16 17 C -0.19 -2.06 9.01 -39.52 -0.36 -2.42 16 18 C 0.10 1.33 6.70 -38.98 -0.26 1.07 16 19 O -0.31 -3.59 10.35 -19.03 -0.20 -3.78 16 20 C 0.03 0.17 9.81 101.05 0.99 1.16 16 21 C 0.06 0.93 7.30 -39.36 -0.29 0.65 16 22 F -0.13 -2.03 17.10 2.25 0.04 -2.00 16 23 C -0.07 -1.09 9.66 -39.15 -0.38 -1.46 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.70 6.32 -51.93 -0.33 0.37 16 26 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 27 H 0.08 1.34 8.13 -51.92 -0.42 0.92 16 28 H 0.07 1.01 5.10 -51.93 -0.26 0.75 16 29 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.15 1.71 3.71 -52.48 -0.19 1.52 16 33 H 0.14 1.04 6.28 -52.48 -0.33 0.71 16 34 H 0.06 0.32 7.64 -51.93 -0.40 -0.08 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 37 H 0.15 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -33.49 316.48 -5.73 -39.22 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.37 Total: -2.31 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.34 Total: -0.83 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.30 Total: -38.25 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.11 Total: -17.32 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.49 -5.73 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061669015.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.346 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds