Wall clock time and date at job start Tue Mar 31 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47271 * 2 1 4 4 C 1.46491 * 120.00214 * 277.52393 * 3 2 1 5 5 C 1.50700 * 109.47615 * 270.00291 * 4 3 2 6 6 H 1.08003 * 119.99803 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00277 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99995 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99972 * 180.02562 * 7 5 4 10 10 H 1.48488 * 109.47198 * 59.99849 * 9 7 5 11 11 H 1.48502 * 109.46902 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47015 * 299.99547 * 9 7 5 13 13 C 1.34780 * 119.99658 * 97.52870 * 3 2 1 14 14 O 1.21585 * 119.99765 * 185.78068 * 13 3 2 15 15 C 1.47602 * 120.00040 * 5.78320 * 13 3 2 16 16 C 1.39723 * 120.08400 * 314.16685 * 15 13 3 17 17 C 1.37723 * 119.95413 * 180.02562 * 16 15 13 18 18 C 1.38924 * 120.11806 * 0.02562 * 17 16 15 19 19 O 1.35772 * 119.91941 * 180.27622 * 18 17 16 20 20 C 1.42899 * 116.99973 * 359.71990 * 19 18 17 21 21 C 1.39166 * 120.16257 * 359.97438 * 18 17 16 22 22 F 1.35104 * 119.97728 * 180.02562 * 21 18 17 23 23 C 1.37897 * 120.04678 * 359.97438 * 21 18 17 24 24 H 1.08997 * 109.47810 * 189.52999 * 1 2 3 25 25 H 1.09001 * 109.47013 * 309.53348 * 1 2 3 26 26 H 1.09008 * 109.47027 * 69.52816 * 1 2 3 27 27 H 1.09010 * 109.46754 * 240.00064 * 2 1 3 28 28 H 1.08995 * 109.47088 * 120.00426 * 2 1 3 29 29 H 1.09003 * 109.47563 * 30.00466 * 4 3 2 30 30 H 1.09001 * 109.47166 * 149.99990 * 4 3 2 31 31 H 0.96995 * 120.00260 * 179.97438 * 8 7 5 32 32 H 1.08009 * 120.01764 * 359.97438 * 16 15 13 33 33 H 1.08008 * 119.94291 * 180.02562 * 17 16 15 34 34 H 1.08999 * 109.46839 * 60.00333 * 20 19 18 35 35 H 1.08994 * 109.46804 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.47368 * 300.00390 * 20 19 18 37 37 H 1.07995 * 120.05784 * 180.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1059 2.1272 -1.2577 5 6 3.4639 1.9134 -1.8751 6 1 4.1894 1.2851 -1.3799 7 6 3.7805 2.5209 -3.0717 8 7 2.8973 3.2865 -3.6745 9 14 5.4636 2.2553 -3.8374 10 1 5.6625 0.8086 -4.1059 11 1 5.5527 3.0127 -5.1117 12 1 6.5136 2.7344 -2.9030 13 6 2.3871 1.9655 1.1572 14 8 2.6921 3.1424 1.1738 15 6 2.4208 1.1767 2.4043 16 6 1.3555 0.3327 2.7282 17 6 1.3895 -0.4017 3.8928 18 6 2.4811 -0.3045 4.7466 19 8 2.5130 -1.0346 5.8909 20 6 1.3883 -1.8755 6.1554 21 6 3.5449 0.5346 4.4288 22 9 4.6048 0.6259 5.2616 23 6 3.5183 1.2722 3.2640 24 1 -0.3634 -1.0134 0.1701 25 1 -0.3633 0.6541 0.7926 26 1 -0.3633 0.3594 -0.9628 27 1 1.8932 -0.5139 -0.8901 28 1 1.8932 -0.5139 0.8899 29 1 1.3354 1.7749 -1.9436 30 1 1.9592 3.1893 -1.0612 31 1 3.1201 3.7142 -4.5161 32 1 0.5055 0.2570 2.0661 33 1 0.5661 -1.0544 4.1428 34 1 1.2789 -2.6002 5.3486 35 1 1.5414 -2.4010 7.0980 36 1 0.4867 -1.2665 6.2215 37 1 4.3439 1.9231 3.0170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061669015.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:17 Heat of formation + Delta-G solvation = -102.628600 kcal Electronic energy + Delta-G solvation = -21986.599780 eV Core-core repulsion = 18450.614772 eV Total energy + Delta-G solvation = -3535.985008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.93224 -41.60143 -40.47432 -38.14016 -37.13204 -34.93538 -32.25896 -31.77513 -31.27999 -29.24426 -28.17983 -25.47679 -24.46653 -23.90283 -23.40082 -20.59454 -19.34740 -18.73569 -18.49433 -18.09874 -17.28663 -17.22093 -17.01364 -16.39829 -16.09410 -15.98381 -15.80758 -15.29134 -14.90479 -14.77130 -14.36663 -13.96262 -13.68719 -13.42054 -13.37671 -13.23337 -13.08117 -12.88172 -12.63743 -12.51003 -12.29955 -12.12816 -11.99307 -11.82737 -11.74245 -10.81954 -10.64763 -10.11263 -9.53559 -9.29408 -8.23605 -6.38464 -0.21324 -0.01542 1.36259 1.40486 1.47536 1.68892 2.07244 2.18217 2.39688 2.52984 3.06112 3.11006 3.47141 3.60600 3.88022 3.97433 4.13133 4.32856 4.37356 4.41514 4.47147 4.54971 4.65557 4.78442 4.84977 4.93138 4.97529 4.98179 5.06839 5.15795 5.22882 5.38453 5.45660 5.55585 5.81735 6.04614 6.20238 6.64758 6.71844 7.22150 7.37636 8.83445 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.004468 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.397336 B = 6265.820307 C = 6878.419402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 N -0.590 5.590 4 C 0.261 3.739 5 C -0.549 4.549 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.544 3.456 14 O -0.595 6.595 15 C -0.144 4.144 16 C -0.058 4.058 17 C -0.167 4.167 18 C 0.120 3.880 19 O -0.326 6.326 20 C 0.010 3.990 21 C 0.044 3.956 22 F -0.141 7.141 23 C -0.079 4.079 24 H 0.109 0.891 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.031 0.969 30 H 0.000 1.000 31 H 0.268 0.732 32 H 0.171 0.829 33 H 0.191 0.809 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.761 -15.525 16.921 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.034 4.034 3 N -0.320 5.320 4 C 0.140 3.860 5 C -0.587 4.587 6 H 0.070 0.930 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.333 3.667 14 O -0.477 6.477 15 C -0.148 4.148 16 C -0.076 4.076 17 C -0.185 4.185 18 C 0.073 3.927 19 O -0.239 6.239 20 C -0.083 4.083 21 C 0.025 3.975 22 F -0.120 7.120 23 C -0.099 4.099 24 H 0.127 0.873 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.049 0.951 30 H 0.018 0.982 31 H 0.077 0.923 32 H 0.188 0.812 33 H 0.208 0.792 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.095 0.905 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.476 -14.855 16.914 23.720 hybrid contribution 1.197 0.667 -0.741 1.558 sum -6.279 -14.188 16.173 22.412 Atomic orbital electron populations 1.22318 0.93785 1.04293 1.02174 1.22044 0.95971 0.81290 1.04128 1.48182 1.61886 1.15135 1.06779 1.18775 0.96155 0.90994 0.80052 1.21687 1.00359 1.30307 1.06361 0.92966 1.25819 1.01322 0.94341 0.97339 1.70032 1.36593 1.31887 1.18009 0.85500 0.79011 0.79032 0.77482 1.18398 1.20168 1.20515 1.18711 0.77092 0.86538 0.84355 1.90730 1.51493 1.18458 1.86995 1.19558 0.97798 1.01948 0.95460 1.21943 0.97462 0.91420 0.96793 1.21449 0.98867 1.04114 0.94103 1.19246 0.93553 0.91888 0.88019 1.86105 1.46056 1.55515 1.36204 1.23587 0.87070 0.93426 1.04244 1.16806 0.86314 1.03089 0.91330 1.91470 1.54592 1.95495 1.70423 1.20875 0.99099 0.98017 0.91935 0.87259 0.91739 0.93347 0.90834 0.88046 0.95131 0.98215 0.92303 0.81162 0.79180 0.90241 0.86117 0.90492 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.74 9.14 71.98 0.66 -3.08 16 2 C 0.09 2.62 5.59 86.38 0.48 3.10 16 3 N -0.59 -25.41 2.46 -829.86 -2.04 -27.45 16 4 C 0.26 14.17 5.22 85.63 0.45 14.61 16 5 C -0.55 -31.94 9.39 25.60 0.24 -31.70 16 6 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.65 5.46 84.66 0.46 1.11 16 8 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 9 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 13 C 0.54 24.14 7.26 86.71 0.63 24.77 16 14 O -0.59 -32.73 16.54 -3.98 -0.07 -32.79 16 15 C -0.14 -4.78 5.07 -20.09 -0.10 -4.88 16 16 C -0.06 -1.31 7.40 22.51 0.17 -1.14 16 17 C -0.17 -2.81 9.01 22.31 0.20 -2.61 16 18 C 0.12 2.69 6.70 22.66 0.15 2.84 16 19 O -0.33 -6.32 10.35 -91.00 -0.94 -7.26 16 20 C 0.01 0.08 9.81 113.37 1.11 1.19 16 21 C 0.04 1.29 7.30 22.41 0.16 1.45 16 22 F -0.14 -4.37 17.10 44.97 0.77 -3.60 16 23 C -0.08 -2.63 9.66 22.55 0.22 -2.41 16 24 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 1.36 6.32 -2.39 -0.02 1.35 16 26 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.07 2.33 8.13 -2.38 -0.02 2.32 16 28 H 0.10 2.49 5.10 -2.39 -0.01 2.48 16 29 H 0.03 1.65 8.07 -2.39 -0.02 1.64 16 30 H 0.00 -0.02 7.35 -2.39 -0.02 -0.04 16 31 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.17 3.15 3.71 -2.91 -0.01 3.14 16 33 H 0.19 1.37 6.28 -2.91 -0.02 1.35 16 34 H 0.08 0.36 7.64 -2.39 -0.02 0.34 16 35 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.37 7.66 -2.39 -0.02 0.36 16 37 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -79.01 316.48 5.96 -73.05 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 1.10 Total: 3.34 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 4.83 Total: 3.27 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -1.76 Total: -83.22 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.01 Total: -40.05 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.77 Total: -3.60 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -79.01 5.96 -73.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061669015.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.574 kcal (2) G-P(sol) polarization free energy of solvation -79.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds