Wall clock time and date at job start Tue Mar 31 2020 05:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46933 * 2 1 4 4 C 1.37099 * 119.99755 * 263.06383 * 3 2 1 5 5 H 1.08002 * 119.99938 * 192.46687 * 4 3 2 6 6 C 1.38946 * 120.00348 * 12.46413 * 4 3 2 7 7 N 1.31413 * 119.99715 * 17.00367 * 6 4 3 8 8 Si 1.86797 * 120.00527 * 197.00846 * 6 4 3 9 9 H 1.48509 * 109.46775 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47704 * 119.99516 * 8 6 4 11 11 H 1.48499 * 109.47178 * 240.00433 * 8 6 4 12 12 C 1.34775 * 120.00104 * 83.06766 * 3 2 1 13 13 O 1.21300 * 119.99940 * 184.74089 * 12 3 2 14 14 C 1.50696 * 120.00166 * 4.73556 * 12 3 2 15 15 H 1.09007 * 109.47153 * 319.22457 * 14 12 3 16 16 C 1.52998 * 109.47176 * 79.22377 * 14 12 3 17 17 O 1.42902 * 109.47263 * 199.22943 * 14 12 3 18 18 C 1.35944 * 117.00082 * 156.72044 * 17 14 12 19 19 C 1.38703 * 120.02953 * 1.51851 * 18 17 14 20 20 C 1.38151 * 119.97037 * 179.97438 * 19 18 17 21 21 C 1.38463 * 120.02533 * 0.02562 * 20 19 18 22 22 F 1.35106 * 119.96421 * 179.97438 * 21 20 19 23 23 C 1.38446 * 120.06106 * 0.24922 * 21 20 19 24 24 C 1.38143 * 120.03291 * 359.49171 * 23 21 20 25 25 H 1.08998 * 109.46860 * 300.00015 * 1 2 3 26 26 H 1.08993 * 109.47193 * 60.00253 * 1 2 3 27 27 H 1.08999 * 109.46599 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46860 * 239.99985 * 2 1 3 29 29 H 1.09005 * 109.46977 * 120.00076 * 2 1 3 30 30 H 0.97003 * 119.99725 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.46774 * 176.46797 * 16 14 12 32 32 H 1.08997 * 109.47345 * 296.46957 * 16 14 12 33 33 H 1.08997 * 109.47043 * 56.47116 * 16 14 12 34 34 H 1.07994 * 120.02001 * 0.02562 * 19 18 17 35 35 H 1.07999 * 119.98959 * 179.97438 * 20 19 18 36 36 H 1.08008 * 119.98130 * 179.72137 * 23 21 20 37 37 H 1.08001 * 120.02103 * 180.22754 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3820 1.9797 -1.1786 5 1 2.9258 2.9127 -1.1652 6 6 2.0509 1.3859 -2.3905 7 7 1.1238 0.4556 -2.4347 8 14 2.9237 1.9098 -3.9567 9 1 3.9176 2.9668 -3.6396 10 1 3.6178 0.7398 -4.5518 11 1 1.9294 2.4402 -4.9237 12 6 2.1101 2.0635 1.1586 13 8 2.4319 3.2330 1.1499 14 6 1.8128 1.3736 2.4650 15 1 0.9461 0.7237 2.3437 16 6 3.0225 0.5370 2.8867 17 8 1.5373 2.3526 3.4689 18 6 0.7965 1.9510 4.5357 19 6 0.3713 0.6341 4.6293 20 6 -0.3810 0.2273 5.7142 21 6 -0.7110 1.1337 6.7075 22 9 -1.4472 0.7346 7.7678 23 6 -0.2921 2.4498 6.6124 24 6 0.4648 2.8581 5.5313 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.8930 0.0408 -3.2806 31 1 2.8317 0.0883 3.8616 32 1 3.1943 -0.2495 2.1520 33 1 3.9031 1.1764 2.9472 34 1 0.6290 -0.0732 3.8549 35 1 -0.7125 -0.7980 5.7872 36 1 -0.5541 3.1568 7.3858 37 1 0.7946 3.8840 5.4592 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231546.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:04 Heat of formation + Delta-G solvation = -73.853383 kcal Electronic energy + Delta-G solvation = -22203.027008 eV Core-core repulsion = 18668.289787 eV Total energy + Delta-G solvation = -3534.737221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.82033 -40.30223 -38.64913 -36.93053 -35.10219 -32.42424 -31.42805 -30.71934 -29.54029 -29.11709 -25.44046 -24.05243 -23.09842 -22.34050 -21.73398 -19.27053 -18.31819 -17.25766 -16.94776 -16.55343 -15.89393 -15.63229 -15.21047 -14.87588 -14.66896 -14.19535 -13.93573 -13.73873 -13.46773 -13.07093 -12.98270 -12.68886 -12.50019 -12.27525 -11.99975 -11.79373 -11.48525 -11.37672 -11.14345 -10.86317 -10.78824 -10.51484 -10.37518 -10.20178 -9.96052 -9.22467 -9.02404 -8.46245 -7.98668 -7.83433 -6.38999 -3.91506 1.12517 1.23267 3.05863 3.15763 3.22873 3.30802 3.57011 3.74115 4.08939 4.29448 4.63857 4.72241 4.78649 4.98545 5.02154 5.19272 5.31763 5.36349 5.40918 5.57139 5.77507 5.82817 5.91777 6.03530 6.09198 6.12167 6.27680 6.35331 6.44208 6.51757 6.64025 6.71380 7.19898 7.40098 7.50761 7.65731 7.99404 8.41853 9.07996 9.30556 9.84358 10.58822 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035144 B = 0.004065 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.523387 B = 6886.201804 C = 7263.399200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.113 3.887 3 N -0.435 5.435 4 C -0.299 4.299 5 H 0.104 0.896 6 C 0.027 3.973 7 N -0.874 5.874 8 Si 0.927 3.073 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.448 3.552 13 O -0.571 6.571 14 C 0.071 3.929 15 H 0.088 0.912 16 C -0.173 4.173 17 O -0.279 6.279 18 C 0.135 3.865 19 C -0.188 4.188 20 C -0.109 4.109 21 C 0.045 3.955 22 F -0.146 7.146 23 C -0.112 4.112 24 C -0.128 4.128 25 H 0.019 0.981 26 H 0.094 0.906 27 H 0.040 0.960 28 H 0.112 0.888 29 H 0.031 0.969 30 H 0.267 0.733 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 -4.549 12.036 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 N -0.154 5.154 4 C -0.427 4.427 5 H 0.122 0.878 6 C -0.175 4.175 7 N -0.514 5.514 8 Si 0.754 3.246 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.234 3.766 13 O -0.454 6.454 14 C 0.011 3.989 15 H 0.105 0.895 16 C -0.231 4.231 17 O -0.190 6.190 18 C 0.088 3.912 19 C -0.207 4.207 20 C -0.128 4.128 21 C 0.025 3.975 22 F -0.125 7.125 23 C -0.131 4.131 24 C -0.147 4.147 25 H 0.038 0.962 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.130 0.870 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.042 -3.910 11.837 12.632 hybrid contribution -0.003 -0.329 -0.637 0.717 sum -2.045 -4.239 11.200 12.149 Atomic orbital electron populations 1.22167 0.96602 0.99991 1.01959 1.21649 0.94597 0.83657 1.01158 1.43690 1.55417 1.11335 1.04985 1.19823 1.32841 1.08269 0.81735 0.87785 1.25254 0.95913 0.97030 0.99287 1.70055 1.27439 1.27294 1.26646 0.85839 0.79367 0.78575 0.80819 1.19240 1.20595 1.20771 1.19324 0.86098 0.87177 0.84004 1.90552 1.52435 1.15978 1.86444 1.22409 0.98924 0.89772 0.87751 0.89463 1.22324 0.98476 1.00329 1.01948 1.86270 1.65733 1.38413 1.28626 1.19234 0.91122 0.92532 0.88350 1.21251 1.03148 0.95944 1.00322 1.20905 0.98858 0.99817 0.93246 1.17534 0.99074 0.93790 0.87054 1.91465 1.75122 1.91319 1.54612 1.20900 0.98751 0.94457 0.98966 1.20310 1.01257 1.00234 0.92905 0.96165 0.88711 0.94081 0.87048 0.95067 0.92245 0.91771 0.90105 0.90931 0.84149 0.84652 0.84312 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.47 37.16 0.35 -2.63 16 2 C 0.11 2.36 4.93 -4.04 -0.02 2.34 16 3 N -0.43 -10.65 2.64 -114.81 -0.30 -10.96 16 4 C -0.30 -8.01 9.43 -14.93 -0.14 -8.15 16 5 H 0.10 2.96 7.32 -52.49 -0.38 2.58 16 6 C 0.03 0.68 5.06 -17.47 -0.09 0.59 16 7 N -0.87 -21.37 8.28 55.50 0.46 -20.91 16 8 Si 0.93 19.84 29.59 -169.99 -5.03 14.82 16 9 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 12 C 0.45 10.88 6.83 -10.99 -0.08 10.81 16 13 O -0.57 -16.22 16.25 -13.59 -0.22 -16.44 16 14 C 0.07 1.34 1.81 -27.89 -0.05 1.29 16 15 H 0.09 1.51 3.76 -51.93 -0.20 1.31 16 16 C -0.17 -2.68 8.94 37.16 0.33 -2.35 16 17 O -0.28 -5.34 9.41 -38.70 -0.36 -5.71 16 18 C 0.13 2.10 6.55 -39.24 -0.26 1.84 16 19 C -0.19 -2.53 8.21 -39.44 -0.32 -2.86 16 20 C -0.11 -1.32 10.02 -39.53 -0.40 -1.72 16 21 C 0.04 0.56 7.30 -39.42 -0.29 0.27 16 22 F -0.15 -1.85 17.27 2.25 0.04 -1.81 16 23 C -0.11 -1.33 10.02 -39.54 -0.40 -1.72 16 24 C -0.13 -1.74 9.98 -39.44 -0.39 -2.13 16 25 H 0.02 0.38 6.79 -51.93 -0.35 0.02 16 26 H 0.09 2.20 6.33 -51.93 -0.33 1.87 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.11 2.53 5.81 -51.93 -0.30 2.22 16 29 H 0.03 0.55 5.09 -51.93 -0.26 0.29 16 30 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 31 H 0.06 0.83 7.03 -51.93 -0.37 0.46 16 32 H 0.08 1.18 6.41 -51.93 -0.33 0.84 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.14 1.75 5.55 -52.49 -0.29 1.46 16 35 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 306.16 15.07 4.61 4.61 Total: -1.00 -29.67 306.16 -6.61 -36.28 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.06 Total: 4.53 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -1.75 Total: -4.42 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.16 Total: -31.87 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.59 Total: -22.14 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.67 -6.61 -36.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231546.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.570 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds